Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: COL4A6 Sequence: fasta or formatted (1690aa) NCBI GI: 16357503
Description:

type IV alpha 6 collagen isoform B precursor

Referenced in:

Collagen

Other entries for this name:
alt prot [1691aa] type IV alpha 6 collagen isoform A precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6         60           3
 C cysteine            1.2         21           1
 D aspartate           3.1         52           1
 E glutamate           3.4         57           2
 F phenylalanine       3.3         55           1
 G glycine            27.5        464           3
 H histidine           1.1         18           1
 I isoleucine          3.7         62           2
 K lysine              5.6         95           2
 L leucine             8.2        139           3
 M methionine          1.5         25           2
 N asparagine          1.5         25           1
 P proline            16.6        280           3
 Q glutamine           3.8         65           2
 R arginine            2.8         47           2
 S serine              5.8         98           2
 T threonine           3.1         53           2
 V valine              3.0         51           1
 W tryptophan          0.5          8           1
 Y tyrosine            0.9         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   type IV alpha 6 collagen isoform B precursor 
COL4A6                0.997   type IV alpha 6 collagen isoform A precursor 
COL4A2                0.446   alpha 2 type IV collagen preproprotein 
COL4A4                0.426   alpha 4 type IV collagen precursor 
COL4A5                0.424   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.423   type IV collagen alpha 5 isoform 3 precursor 
COL4A5                0.422   type IV collagen alpha 5 isoform 1 precursor 
COL4A1                0.401   alpha 1 type IV collagen preproprotein 
COL4A3                0.377   alpha 3 type IV collagen isoform 1 precursor 
COL4A3                0.348   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.313   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.281   alpha 3 type IV collagen isoform 5 precursor 
COL7A1                0.264   alpha 1 type VII collagen precursor 
COL1A1                0.214   alpha 1 type I collagen preproprotein 
COL3A1                0.212   collagen type III alpha 1 preproprotein 
COL11A1               0.212   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.212   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.212   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL5A2                0.210   alpha 2 type V collagen preproprotein 
COL2A1                0.210   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.209   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL5A3                0.208   collagen, type V, alpha 3 preproprotein 
COL22A1               0.207   collagen, type XXII, alpha 1 
COL16A1               0.207   alpha 1 type XVI collagen precursor 
COL5A1                0.206   alpha 1 type V collagen preproprotein 
COL11A2               0.205   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL11A2               0.205   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.205   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL1A2                0.196   alpha 2 type I collagen 
COL27A1               0.193   collagen, type XXVII, alpha 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press