COL4A6 4477

Name: COL4A6	Sequence: fasta or formatted (1691aa)		NCBI GI: 148536823
Description: type IV alpha 6 collagen isoform A precursor		Referenced in: Collagen
Other entries for this name: alt prot [1690aa] type IV alpha 6 collagen isoform B precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.5 60 3 C cysteine 1.2 21 1 D aspartate 3.1 52 1 E glutamate 3.4 57 2 F phenylalanine 3.3 55 1 G glycine 27.4 463 3 H histidine 1.0 17 1 I isoleucine 3.7 63 2 K lysine 5.7 96 2 L leucine 8.3 140 3 M methionine 1.5 25 2 N asparagine 1.5 26 1 P proline 16.5 279 3 Q glutamine 3.8 65 2 R arginine 2.8 47 2 S serine 5.8 98 2 T threonine 3.1 53 2 V valine 3.0 51 1 W tryptophan 0.5 8 1 Y tyrosine 0.9 15 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 type IV alpha 6 collagen isoform A precursor COL4A6 0.998 type IV alpha 6 collagen isoform B precursor COL4A2 0.446 alpha 2 type IV collagen preproprotein COL4A4 0.426 alpha 4 type IV collagen precursor COL4A5 0.424 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.423 type IV collagen alpha 5 isoform 3 precursor COL4A5 0.422 type IV collagen alpha 5 isoform 1 precursor COL4A1 0.401 alpha 1 type IV collagen preproprotein COL4A3 0.377 alpha 3 type IV collagen isoform 1 precursor COL4A3 0.348 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.313 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.281 alpha 3 type IV collagen isoform 5 precursor COL7A1 0.264 alpha 1 type VII collagen precursor COL1A1 0.214 alpha 1 type I collagen preproprotein COL3A1 0.212 collagen type III alpha 1 preproprotein COL11A1 0.212 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.212 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.212 alpha 1 type XI collagen isoform A preproprotein [Ho... COL5A2 0.210 alpha 2 type V collagen preproprotein COL2A1 0.210 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.209 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL5A3 0.208 collagen, type V, alpha 3 preproprotein COL22A1 0.208 collagen, type XXII, alpha 1 COL16A1 0.207 alpha 1 type XVI collagen precursor COL5A1 0.206 alpha 1 type V collagen preproprotein COL11A2 0.205 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL11A2 0.205 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.205 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL1A2 0.196 alpha 2 type I collagen COL27A1 0.193 collagen, type XXVII, alpha 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.