Guide to the Human Genome
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Name: TNFRSF10B Sequence: fasta or formatted (411aa) NCBI GI: 224494026
Description:

tumor necrosis factor receptor superfamily, member 10b isoform 2 precursor

Referenced in:

TNF and Related Signals

Other entries for this name:
alt prot [440aa] tumor necrosis factor receptor superfamily, member 10b isoform 1 ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         31           2
 C cysteine            4.1         17           1
 D aspartate           5.6         23           2
 E glutamate           8.8         36           2
 F phenylalanine       1.7          7           1
 G glycine             7.8         32           4
 H histidine           2.2          9           2
 I isoleucine          3.4         14           3
 K lysine              4.6         19           2
 L leucine             9.5         39           3
 M methionine          2.4         10           1
 N asparagine          2.4         10           1
 P proline             6.8         28           2
 Q glutamine           4.4         18           2
 R arginine            7.1         29           3
 S serine              6.8         28           2
 T threonine           5.1         21           3
 V valine              7.3         30           2
 W tryptophan          1.2          5           1
 Y tyrosine            1.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor receptor superfamily, member ... 
TNFRSF10B             0.982   tumor necrosis factor receptor superfamily, member ...
TNFRSF10A             0.463   tumor necrosis factor receptor superfamily, member 1...
TNFRSF10D             0.322   tumor necrosis factor receptor superfamily, member 1...
TNFRSF10C             0.152   tumor necrosis factor receptor superfamily, member 1...
FAS                   0.051   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.051   tumor necrosis factor receptor superfamily, member 6 ...
FAS                   0.050   tumor necrosis factor receptor superfamily, member 6...
TNFRSF25              0.043   tumor necrosis factor receptor superfamily, member 2...
LTBR                  0.039   lymphotoxin beta receptor 
TNFRSF25              0.039   tumor necrosis factor receptor superfamily, member 25...
TNFRSF1A              0.037   tumor necrosis factor receptor 1 precursor 
TNFRSF1B              0.034   tumor necrosis factor receptor 2 precursor 
TNFRSF25              0.034   tumor necrosis factor receptor superfamily, member 2...
TNFRSF14              0.029   tumor necrosis factor receptor superfamily, member 1...
TNFRSF25              0.027   tumor necrosis factor receptor superfamily, member 2...
TNFRSF21              0.026   tumor necrosis factor receptor superfamily, member 21...
NGFR                  0.026   nerve growth factor receptor precursor 
TNFRSF11B             0.023   osteoprotegerin precursor 
TNFRSF4               0.021   tumor necrosis factor receptor superfamily, member 4 ...
TNFRSF25              0.021   tumor necrosis factor receptor superfamily, member 2...
TNFRSF8               0.020   tumor necrosis factor receptor superfamily, member 8...
EPHA1                 0.016   ephrin receptor EphA1 
TNFRSF6B              0.015   tumor necrosis factor receptor superfamily, member 6...
TNFRSF6B              0.015   tumor necrosis factor receptor superfamily, member 6b...
TNFRSF11A             0.013   tumor necrosis factor receptor superfamily, member 11...
CD40                  0.012   CD40 antigen isoform 1 precursor 
CD40                  0.012   CD40 antigen isoform 2 precursor 
EPHA6                 0.012   EPH receptor A6 isoform a 
CD27                  0.012   tumor necrosis factor receptor superfamily, member 7 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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