Guide to the Human Genome
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Name: TNFRSF10B Sequence: fasta or formatted (440aa) NCBI GI: 224494019
Description:

tumor necrosis factor receptor superfamily, member 10b isoform 1 precursor

Referenced in:

TNF and Related Signals

Other entries for this name:
alt prot [411aa] tumor necrosis factor receptor superfamily, member 10b isoform 2 ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         33           2
 C cysteine            4.1         18           1
 D aspartate           5.2         23           2
 E glutamate           8.9         39           2
 F phenylalanine       1.6          7           1
 G glycine             8.0         35           4
 H histidine           2.3         10           2
 I isoleucine          3.2         14           3
 K lysine              4.5         20           2
 L leucine             9.1         40           3
 M methionine          2.3         10           1
 N asparagine          2.3         10           1
 P proline             7.3         32           2
 Q glutamine           4.1         18           2
 R arginine            6.6         29           3
 S serine              7.7         34           2
 T threonine           5.7         25           3
 V valine              7.5         33           2
 W tryptophan          1.1          5           1
 Y tyrosine            1.1          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor receptor superfamily, member ... 
TNFRSF10B             0.917   tumor necrosis factor receptor superfamily, member ...
TNFRSF10A             0.426   tumor necrosis factor receptor superfamily, member 1...
TNFRSF10D             0.329   tumor necrosis factor receptor superfamily, member 1...
TNFRSF10C             0.168   tumor necrosis factor receptor superfamily, member 1...
FAS                   0.051   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.050   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.050   tumor necrosis factor receptor superfamily, member 6 ...
TNFRSF25              0.045   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.045   tumor necrosis factor receptor superfamily, member 25...
LTBR                  0.042   lymphotoxin beta receptor 
TNFRSF1A              0.039   tumor necrosis factor receptor 1 precursor 
TNFRSF25              0.034   tumor necrosis factor receptor superfamily, member 2...
TNFRSF1B              0.033   tumor necrosis factor receptor 2 precursor 
TNFRSF14              0.029   tumor necrosis factor receptor superfamily, member 1...
NGFR                  0.029   nerve growth factor receptor precursor 
TNFRSF11B             0.025   osteoprotegerin precursor 
TNFRSF21              0.024   tumor necrosis factor receptor superfamily, member 21...
TNFRSF8               0.022   tumor necrosis factor receptor superfamily, member 8...
PEAR1                 0.019   platelet endothelial aggregation receptor 1 
TNFRSF4               0.019   tumor necrosis factor receptor superfamily, member 4 ...
TNFRSF25              0.019   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.019   tumor necrosis factor receptor superfamily, member 2...
CD40                  0.018   CD40 antigen isoform 1 precursor 
TNFRSF6B              0.015   tumor necrosis factor receptor superfamily, member 6...
TNFRSF11A             0.015   tumor necrosis factor receptor superfamily, member 11...
TNFRSF6B              0.015   tumor necrosis factor receptor superfamily, member 6b...
EPHA1                 0.015   ephrin receptor EphA1 
CD40                  0.011   CD40 antigen isoform 2 precursor 
EPHA6                 0.011   EPH receptor A6 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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