Guide to the Human Genome
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Name: TNFRSF25 Sequence: fasta or formatted (372aa) NCBI GI: 23200025
Description:

tumor necrosis factor receptor superfamily, member 25 isoform 4 precursor

Referenced in:

TNF and Related Signals

Other entries for this name:
alt prot [426aa] tumor necrosis factor receptor superfamily, member 25 isoform 1 p...
alt prot [380aa] tumor necrosis factor receptor superfamily, member 25 isoform 3 p...
alt prot [234aa] tumor necrosis factor receptor superfamily, member 25 isoform 7 p...
alt prot [417aa] tumor necrosis factor receptor superfamily, member 25 isoform 2 p...
alt prot [181aa] tumor necrosis factor receptor superfamily, member 25 isoform 12 ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         39           3
 C cysteine            7.0         26           2
 D aspartate           4.3         16           1
 E glutamate           5.4         20           1
 F phenylalanine       2.2          8           1
 G glycine             8.3         31           2
 H histidine           2.2          8           1
 I isoleucine          1.1          4           1
 K lysine              1.9          7           2
 L leucine            11.0         41           3
 M methionine          2.2          8           2
 N asparagine          0.5          2           1
 P proline             8.6         32           3
 Q glutamine           5.4         20           3
 R arginine            7.3         27           2
 S serine              5.9         22           3
 T threonine           5.4         20           1
 V valine              6.5         24           2
 W tryptophan          2.4          9           1
 Y tyrosine            2.2          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor receptor superfamily, member 2... 
TNFRSF25              0.973   tumor necrosis factor receptor superfamily, member 25...
TNFRSF25              0.905   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.844   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.457   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.335   tumor necrosis factor receptor superfamily, member 2...
TNFRSF1A              0.092   tumor necrosis factor receptor 1 precursor 
TNFRSF10B             0.039   tumor necrosis factor receptor superfamily, member ...
TNFRSF10B             0.029   tumor necrosis factor receptor superfamily, member ...
TNFRSF19              0.025   tumor necrosis factor receptor superfamily, member 1...
TNFRSF19              0.025   tumor necrosis factor receptor superfamily, member 1...
TNFRSF10A             0.025   tumor necrosis factor receptor superfamily, member 1...
TNFRSF14              0.022   tumor necrosis factor receptor superfamily, member 1...
MEGF10                0.022   multiple EGF-like-domains 10 
ANKRD11               0.021   ankyrin repeat domain 11 
CELSR3                0.020   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
ITGB4                 0.018   integrin beta 4 isoform 2 precursor 
ITGB4                 0.018   integrin beta 4 isoform 1 precursor 
ITGB4                 0.018   integrin beta 4 isoform 3 precursor 
LAMC3                 0.018   laminin, gamma 3 precursor 
LAMB2                 0.018   laminin, beta 2 precursor 
TNFRSF4               0.018   tumor necrosis factor receptor superfamily, member 4 ...
LAMC1                 0.018   laminin, gamma 1 precursor 
MEGF11                0.018   multiple EGF-like-domains 11 
USH2A                 0.017   usherin isoform B 
USH2A                 0.017   usherin isoform A 
CELSR1                0.017   cadherin EGF LAG seven-pass G-type receptor 1 
SCARF1                0.017   scavenger receptor class F, member 1 isoform 3 precu...
SCARF1                0.017   scavenger receptor class F, member 1 isoform 1 precu...
SCARF1                0.017   scavenger receptor class F, member 1 isoform 5 prec...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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