Guide to the Human Genome
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Name: TNFRSF25 Sequence: fasta or formatted (234aa) NCBI GI: 23200031
Description:

tumor necrosis factor receptor superfamily, member 25 isoform 7 precursor

Referenced in:

TNF and Related Signals

Other entries for this name:
alt prot [426aa] tumor necrosis factor receptor superfamily, member 25 isoform 1 p...
alt prot [380aa] tumor necrosis factor receptor superfamily, member 25 isoform 3 p...
alt prot [372aa] tumor necrosis factor receptor superfamily, member 25 isoform 4 p...
alt prot [417aa] tumor necrosis factor receptor superfamily, member 25 isoform 2 p...
alt prot [181aa] tumor necrosis factor receptor superfamily, member 25 isoform 12 ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         29           3
 C cysteine            3.8          9           2
 D aspartate           4.7         11           1
 E glutamate           6.8         16           1
 F phenylalanine       1.7          4           1
 G glycine             8.5         20           2
 H histidine           1.3          3           1
 I isoleucine          1.7          4           1
 K lysine              2.1          5           2
 L leucine            11.1         26           3
 M methionine          3.0          7           2
 N asparagine          0.4          1           1
 P proline             9.8         23           3
 Q glutamine           6.0         14           3
 R arginine            8.1         19           2
 S serine              5.1         12           2
 T threonine           4.3         10           1
 V valine              5.1         12           1
 W tryptophan          2.1          5           1
 Y tyrosine            1.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor receptor superfamily, member 2... 
TNFRSF25              0.761   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.761   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.761   tumor necrosis factor receptor superfamily, member 25...
TNFRSF25              0.755   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.197   tumor necrosis factor receptor superfamily, member 2...
TNFRSF1A              0.100   tumor necrosis factor receptor 1 precursor 
TNFRSF10B             0.037   tumor necrosis factor receptor superfamily, member ...
TNFRSF10B             0.037   tumor necrosis factor receptor superfamily, member ...
ANKRD11               0.033   ankyrin repeat domain 11 
ATG9B                 0.022   ATG9 autophagy related 9 homolog B 
CEL                   0.020   carboxyl ester lipase precursor 
APBA3                 0.017   amyloid beta (A4) precursor protein-binding, family ...
SF3B1                 0.017   splicing factor 3b, subunit 1 isoform 1 
MIIP                  0.017   invasion inhibitory protein 45 
IER5L                 0.017   immediate early response 5-like 
EPSTI1                0.017   epithelial stromal interaction 1 isoform 1 
EPSTI1                0.017   epithelial stromal interaction 1 isoform 2 
TUT1                  0.015   terminal uridylyl transferase 1, U6 snRNA-specific ...
TNFRSF10A             0.015   tumor necrosis factor receptor superfamily, member 1...
PODXL                 0.015   podocalyxin-like isoform 2 precursor 
IRX2                  0.015   iroquois homeobox 2 
IRX2                  0.015   iroquois homeobox 2 
MYO15A                0.015   myosin XV 
FLJ22184              0.015   PREDICTED: hypothetical protein FLJ22184 
CHST2                 0.015   carbohydrate (N-acetylglucosamine-6-O) sulfotransfer...
NUMBL                 0.013   numb homolog (Drosophila)-like 
NACA                  0.013   nascent polypeptide-associated complex alpha subuni...
PLEKHA2               0.013   pleckstrin homology domain containing, family A (ph...
LOC389813             0.013   similar to CG15216-PA 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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