Guide to the Human Genome
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Name: TNFRSF10D Sequence: fasta or formatted (386aa) NCBI GI: 22547108
Description:

tumor necrosis factor receptor superfamily, member 10d precursor

Referenced in:

TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         29           2
 C cysteine            4.9         19           1
 D aspartate           3.6         14           1
 E glutamate           8.0         31           3
 F phenylalanine       1.8          7           1
 G glycine             7.3         28           5
 H histidine           1.0          4           1
 I isoleucine          4.1         16           3
 K lysine              4.1         16           2
 L leucine             8.3         32           2
 M methionine          1.0          4           1
 N asparagine          2.8         11           2
 P proline             6.0         23           1
 Q glutamine           5.2         20           3
 R arginine            7.0         27           3
 S serine              8.8         34           2
 T threonine           7.8         30           3
 V valine              8.0         31           4
 W tryptophan          0.5          2           1
 Y tyrosine            2.1          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor receptor superfamily, member 1... 
TNFRSF10B             0.382   tumor necrosis factor receptor superfamily, member ...
TNFRSF10B             0.349   tumor necrosis factor receptor superfamily, member ...
TNFRSF10A             0.319   tumor necrosis factor receptor superfamily, member 1...
TNFRSF10C             0.292   tumor necrosis factor receptor superfamily, member 1...
FAS                   0.052   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.052   tumor necrosis factor receptor superfamily, member 6 ...
FAS                   0.049   tumor necrosis factor receptor superfamily, member 6...
TNFRSF11B             0.042   osteoprotegerin precursor 
TNFRSF14              0.041   tumor necrosis factor receptor superfamily, member 1...
TNFRSF1A              0.039   tumor necrosis factor receptor 1 precursor 
NGFR                  0.039   nerve growth factor receptor precursor 
TNFRSF1B              0.032   tumor necrosis factor receptor 2 precursor 
TNFRSF4               0.027   tumor necrosis factor receptor superfamily, member 4 ...
TNFRSF21              0.025   tumor necrosis factor receptor superfamily, member 21...
CD27                  0.019   tumor necrosis factor receptor superfamily, member 7 ...
LTBR                  0.019   lymphotoxin beta receptor 
EPHA6                 0.019   EPH receptor A6 isoform a 
TNFRSF8               0.017   tumor necrosis factor receptor superfamily, member 8...
LOC100292811          0.017   PREDICTED: similar to proprotein convertase subtili...
LOC100290671          0.016   PREDICTED: hypothetical protein XP_002347099 
LOC100289618          0.016   PREDICTED: hypothetical protein XP_002342982 
SCUBE3                0.016   signal peptide, CUB domain, EGF-like 3 
TNFRSF11A             0.016   tumor necrosis factor receptor superfamily, member 11...
BSN                   0.015   bassoon protein 
NFXL1                 0.015   nuclear transcription factor, X-box binding-like 1 [...
TNFRSF9               0.013   tumor necrosis factor receptor superfamily, member 9 ...
LOC729815             0.012   PREDICTED: hypothetical protein 
PCSK5                 0.012   proprotein convertase subtilisin/kexin type 5 prepro...
LOC729815             0.011   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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