Guide to the Human Genome
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Name: EPHA6 Sequence: fasta or formatted (1130aa) NCBI GI: 145312251
Description:

EPH receptor A6 isoform a

Referenced in:

Ephrins and Ephrin Receptors

Other entries for this name:
alt prot [334aa] EPH receptor A6 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         72           3
 C cysteine            2.7         31           1
 D aspartate           5.0         56           2
 E glutamate           6.8         77           9
 F phenylalanine       4.6         52           2
 G glycine             7.3         83           3
 H histidine           2.6         29           1
 I isoleucine          6.5         73           2
 K lysine              4.7         53           2
 L leucine             7.3         82           2
 M methionine          2.7         30           2
 N asparagine          3.4         38           2
 P proline             6.6         75           2
 Q glutamine           3.0         34           1
 R arginine            6.5         73           2
 S serine              7.3         82           3
 T threonine           5.9         67           3
 V valine              6.3         71           2
 W tryptophan          1.5         17           1
 Y tyrosine            3.1         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   EPH receptor A6 isoform a 
EPHA3                 0.549   ephrin receptor EphA3 isoform a precursor 
EPHA5                 0.533   ephrin receptor EphA5 isoform b precursor 
EPHA5                 0.529   ephrin receptor EphA5 isoform a precursor 
EPHA7                 0.518   ephrin receptor EphA7 
EPHA4                 0.518   ephrin receptor EphA4 
EPHA8                 0.487   ephrin receptor EphA8 isoform 1 precursor 
EPHB2                 0.459   ephrin receptor EphB2 isoform 2 precursor 
EPHB2                 0.457   ephrin receptor EphB2 isoform 1 precursor 
EPHB1                 0.454   ephrin receptor EphB1 precursor 
EPHB3                 0.439   ephrin receptor EphB3 precursor 
EPHA2                 0.397   ephrin receptor EphA2 
EPHB4                 0.378   EPH receptor B4 precursor 
EPHA10                0.367   EPH receptor A10 isofom 3 
EPHA1                 0.312   ephrin receptor EphA1 
EPHB6                 0.306   ephrin receptor EphB6 precursor 
EPHA3                 0.305   ephrin receptor EphA3 isoform b precursor 
EPHA6                 0.248   EPH receptor A6 isoform b 
EPHA8                 0.227   ephrin receptor EphA8 isoform 2 precursor 
EPHA10                0.123   EPH receptor A10 isoform 2 
PTK2                  0.083   PTK2 protein tyrosine kinase 2 isoform b 
PTK2                  0.083   PTK2 protein tyrosine kinase 2 isoform a 
YES1                  0.080   viral oncogene yes-1 homolog 1 
FYN                   0.079   protein-tyrosine kinase fyn isoform a 
SRC                   0.079   proto-oncogene tyrosine-protein kinase SRC 
SRC                   0.079   proto-oncogene tyrosine-protein kinase SRC 
FYN                   0.078   protein-tyrosine kinase fyn isoform b 
HCK                   0.077   hemopoietic cell kinase isoform p61HCK 
FRK                   0.076   fyn-related kinase 
FYN                   0.075   protein-tyrosine kinase fyn isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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