Guide to the Human Genome
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Name: TNFRSF10A Sequence: fasta or formatted (468aa) NCBI GI: 21361086
Description:

tumor necrosis factor receptor superfamily, member 10a

Referenced in:

TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         45           4
 C cysteine            4.5         21           3
 D aspartate           4.5         21           1
 E glutamate           6.2         29           3
 F phenylalanine       2.6         12           2
 G glycine             9.4         44           3
 H histidine           2.6         12           1
 I isoleucine          3.0         14           1
 K lysine              3.8         18           1
 L leucine             8.8         41           3
 M methionine          2.4         11           1
 N asparagine          3.8         18           2
 P proline             7.1         33           3
 Q glutamine           3.2         15           2
 R arginine            6.4         30           3
 S serine              7.3         34           2
 T threonine           5.8         27           3
 V valine              7.1         33           3
 W tryptophan          1.5          7           1
 Y tyrosine            0.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor receptor superfamily, member 1... 
TNFRSF10B             0.401   tumor necrosis factor receptor superfamily, member ...
TNFRSF10B             0.396   tumor necrosis factor receptor superfamily, member ...
TNFRSF10D             0.255   tumor necrosis factor receptor superfamily, member 1...
TNFRSF10C             0.174   tumor necrosis factor receptor superfamily, member 1...
FAS                   0.050   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.050   tumor necrosis factor receptor superfamily, member 6 ...
FAS                   0.040   tumor necrosis factor receptor superfamily, member 6...
TNFRSF1B              0.032   tumor necrosis factor receptor 2 precursor 
TNFRSF11B             0.030   osteoprotegerin precursor 
LTBR                  0.029   lymphotoxin beta receptor 
TNFRSF6B              0.028   tumor necrosis factor receptor superfamily, member 6...
TNFRSF6B              0.028   tumor necrosis factor receptor superfamily, member 6b...
TNFRSF8               0.027   tumor necrosis factor receptor superfamily, member 8...
TNFRSF1A              0.024   tumor necrosis factor receptor 1 precursor 
NGFR                  0.023   nerve growth factor receptor precursor 
TNFRSF21              0.022   tumor necrosis factor receptor superfamily, member 21...
TNFRSF4               0.022   tumor necrosis factor receptor superfamily, member 4 ...
SCUBE3                0.021   signal peptide, CUB domain, EGF-like 3 
TNFRSF25              0.020   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.020   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.020   tumor necrosis factor receptor superfamily, member 25...
SCUBE2                0.019   CEGP1 protein 
ANK3                  0.018   ankyrin 3 isoform 1 
TNFRSF14              0.017   tumor necrosis factor receptor superfamily, member 1...
TNFRSF25              0.017   tumor necrosis factor receptor superfamily, member 2...
EPHB4                 0.014   EPH receptor B4 precursor 
COMP                  0.014   cartilage oligomeric matrix protein precursor 
HEG1                  0.014   HEG homolog 1 
SCARF1                0.013   scavenger receptor class F, member 1 isoform 5 prec...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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