Guide to the Human Genome
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Name: PEAR1 Sequence: fasta or formatted (1037aa) NCBI GI: 122937343
Description:

platelet endothelial aggregation receptor 1

Referenced in:

Epidermal Growth Factor

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         51           1
 C cysteine           12.0        124           2
 D aspartate           3.9         40           2
 E glutamate           4.1         42           3
 F phenylalanine       2.5         26           2
 G glycine            11.5        119           2
 H histidine           4.5         47           3
 I isoleucine          1.3         13           1
 K lysine              1.6         17           1
 L leucine             5.5         57           4
 M methionine          0.9          9           1
 N asparagine          3.4         35           2
 P proline            12.5        130           4
 Q glutamine           5.2         54           1
 R arginine            5.0         52           3
 S serine              8.6         89           2
 T threonine           4.7         49           4
 V valine              3.7         38           2
 W tryptophan          1.6         17           1
 Y tyrosine            2.7         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   platelet endothelial aggregation receptor 1 
MEGF10                0.409   multiple EGF-like-domains 10 
MEGF11                0.368   multiple EGF-like-domains 11 
MEGF6                 0.249   EGF-like-domain, multiple 3 
SCARF1                0.107   scavenger receptor class F, member 1 isoform 3 precu...
SCARF1                0.107   scavenger receptor class F, member 1 isoform 1 precu...
SCARF2                0.099   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.099   scavenger receptor class F, member 2 isoform 2 [Homo...
TNXB                  0.097   tenascin XB isoform 1 precursor 
NOTCH3                0.095   Notch homolog 3 
NOTCH4                0.093   notch4 preproprotein 
NOTCH1                0.089   notch1 preproprotein 
NOTCH2                0.080   notch 2 preproprotein 
TNC                   0.080   tenascin C precursor 
JAG1                  0.079   jagged 1 precursor 
JAG2                  0.078   jagged 2 isoform a precursor 
JAG2                  0.078   jagged 2 isoform b precursor 
LAMA5                 0.075   laminin alpha 5 
SCARF1                0.070   scavenger receptor class F, member 1 isoform 5 prec...
SNED1                 0.069   6720455I24Rik homolog 
LAMB4                 0.059   laminin, beta 4 
LAMA2                 0.058   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.058   laminin alpha 2 subunit isoform a precursor 
LAMB2                 0.058   laminin, beta 2 precursor 
LAMA1                 0.055   laminin, alpha 1 precursor 
DLL4                  0.052   delta-like 4 protein precursor 
LAMC3                 0.051   laminin, gamma 3 precursor 
LAMB1                 0.050   laminin, beta 1 precursor 
EYS                   0.050   eyes shut homolog isoform 1 
USH2A                 0.049   usherin isoform B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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