COL10A1 9749

Name: COL10A1	Sequence: fasta or formatted (680aa)		NCBI GI: 18105032
Description: type X collagen alpha 1 precursor		Referenced in: Collagen
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.3 36 2 C cysteine 0.1 1 1 D aspartate 1.8 12 1 E glutamate 3.2 22 1 F phenylalanine 2.2 15 2 G glycine 25.7 175 2 H histidine 1.5 10 1 I isoleucine 4.0 27 2 K lysine 5.1 35 1 L leucine 5.1 35 3 M methionine 1.6 11 1 N asparagine 2.1 14 1 P proline 21.3 145 2 Q glutamine 3.4 23 2 R arginine 2.8 19 1 S serine 4.0 27 2 T threonine 3.5 24 1 V valine 3.8 26 1 W tryptophan 0.3 2 1 Y tyrosine 3.1 21 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 type X collagen alpha 1 precursor COL8A2 0.470 collagen, type VIII, alpha 2 COL8A1 0.465 alpha 1 type VIII collagen precursor COL8A1 0.465 alpha 1 type VIII collagen precursor COL5A1 0.300 alpha 1 type V collagen preproprotein COL4A5 0.299 type IV collagen alpha 5 isoform 3 precursor COL4A5 0.299 type IV collagen alpha 5 isoform 1 precursor COL3A1 0.298 collagen type III alpha 1 preproprotein COL4A5 0.297 type IV collagen alpha 5 isoform 2 precursor COL1A1 0.293 alpha 1 type I collagen preproprotein COL2A1 0.289 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.289 collagen, type II, alpha 1 isoform 2 precursor [Hom... LOC100293055 0.289 PREDICTED: similar to COL22A1 protein COL4A4 0.286 alpha 4 type IV collagen precursor COL4A1 0.283 alpha 1 type IV collagen preproprotein COL1A2 0.282 alpha 2 type I collagen COL11A1 0.282 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.282 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.282 alpha 1 type XI collagen isoform A preproprotein [Ho... COL5A2 0.280 alpha 2 type V collagen preproprotein COL27A1 0.278 collagen, type XXVII, alpha 1 COL11A2 0.277 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.277 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.277 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL22A1 0.276 collagen, type XXII, alpha 1 COL7A1 0.275 alpha 1 type VII collagen precursor COL9A2 0.275 alpha 2 type IX collagen COL5A3 0.273 collagen, type V, alpha 3 preproprotein COL9A1 0.272 alpha 1 type IX collagen isoform 1 precursor COL4A3 0.272 alpha 3 type IV collagen isoform 5 precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.