Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RELT Sequence: fasta or formatted (430aa) NCBI GI: 23238200
Description:

RELT tumor necrosis factor receptor precursor

Referenced in:

TNF and Related Signals

Other entries for this name:
alt mRNA [430aa] RELT tumor necrosis factor receptor precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         35           3
 C cysteine            4.4         19           2
 D aspartate           2.1          9           1
 E glutamate           6.3         27           2
 F phenylalanine       1.2          5           1
 G glycine            10.2         44           4
 H histidine           2.6         11           2
 I isoleucine          2.8         12           1
 K lysine              4.0         17           2
 L leucine            10.0         43           2
 M methionine          1.2          5           1
 N asparagine          2.3         10           1
 P proline            11.4         49           2
 Q glutamine           3.7         16           2
 R arginine            6.5         28           2
 S serine              7.0         30           2
 T threonine           6.0         26           2
 V valine              6.3         27           2
 W tryptophan          2.8         12           1
 Y tyrosine            1.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RELT tumor necrosis factor receptor precursor 
RELT                  1.000   RELT tumor necrosis factor receptor precursor 
RELL1                 0.093   receptor expressed in lymphoid tissues like 1 [Homo...
RELL1                 0.093   receptor expressed in lymphoid tissues like 1 [Homo...
RELL2                 0.066   RELT-like 2 
RELL2                 0.066   RELT-like 2 
TNFRSF6B              0.037   tumor necrosis factor receptor superfamily, member 6...
TNFRSF6B              0.037   tumor necrosis factor receptor superfamily, member 6b...
TNFRSF4               0.036   tumor necrosis factor receptor superfamily, member 4 ...
EDAR                  0.035   ectodysplasin A receptor precursor 
EDA2R                 0.035   X-linked ectodysplasin receptor 
TNFRSF19              0.030   tumor necrosis factor receptor superfamily, member 1...
TNFRSF19              0.030   tumor necrosis factor receptor superfamily, member 1...
LTBR                  0.027   lymphotoxin beta receptor 
TNFRSF11B             0.025   osteoprotegerin precursor 
LAMA5                 0.018   laminin alpha 5 
TNFRSF14              0.018   tumor necrosis factor receptor superfamily, member 1...
EPHB3                 0.017   ephrin receptor EphB3 precursor 
FOXL2                 0.015   forkhead box L2 
TNFRSF9               0.015   tumor necrosis factor receptor superfamily, member 9 ...
LAMB4                 0.014   laminin, beta 4 
CSTF2T                0.014   cleavage stimulation factor, 3' pre-RNA, subunit 2, ...
TNFRSF11A             0.014   tumor necrosis factor receptor superfamily, member 11...
FUSSEL18              0.014   PREDICTED: functional smad suppressing element 18 [...
SCUBE3                0.014   signal peptide, CUB domain, EGF-like 3 
TNFRSF1B              0.014   tumor necrosis factor receptor 2 precursor 
SCARF1                0.012   scavenger receptor class F, member 1 isoform 3 precu...
SCARF1                0.012   scavenger receptor class F, member 1 isoform 1 precu...
ADCY5                 0.012   adenylate cyclase 5 
TNFRSF1A              0.011   tumor necrosis factor receptor 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press