SHROOM3 11982

Name: SHROOM3	Sequence: fasta or formatted (1996aa)		NCBI GI: 203098098
Description: shroom family member 3 protein		Referenced in: PDZ Domain
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.5 149 2 C cysteine 1.4 28 1 D aspartate 4.4 88 2 E glutamate 7.7 154 4 F phenylalanine 2.2 44 1 G glycine 8.1 162 2 H histidine 3.0 60 2 I isoleucine 2.2 44 2 K lysine 5.0 99 2 L leucine 8.9 178 3 M methionine 1.3 25 2 N asparagine 2.8 56 2 P proline 9.8 196 8 Q glutamine 4.8 95 2 R arginine 7.3 146 3 S serine 12.3 245 4 T threonine 4.7 93 2 V valine 4.0 79 2 W tryptophan 0.8 16 1 Y tyrosine 2.0 39 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 shroom family member 3 protein SHROOM2 0.097 apical protein of Xenopus-like SHROOM4 0.055 shroom family member 4 SHROOM1 0.021 shroom family member 1 PRR12 0.011 proline rich 12 SRRM2 0.010 splicing coactivator subunit SRm300 KIAA1522 0.009 hypothetical protein LOC57648 ABI1 0.008 abl-interactor 1 isoform d ABI1 0.008 abl-interactor 1 isoform b BRD4 0.008 bromodomain-containing protein 4 isoform long GLTSCR1 0.008 glioma tumor suppressor candidate region gene 1 [Ho... FLJ22184 0.007 PREDICTED: hypothetical protein LOC80164 ABI1 0.007 abl-interactor 1 isoform a PDLIM2 0.007 PDZ and LIM domain 2 isoform 3 PDLIM2 0.007 PDZ and LIM domain 2 isoform 1 PDLIM2 0.007 PDZ and LIM domain 2 isoform 2 ATN1 0.007 atrophin-1 ATN1 0.007 atrophin-1 SYNPO2 0.007 synaptopodin 2 isoform c SYNPO2 0.007 synaptopodin 2 isoform b SYNPO2 0.007 synaptopodin 2 isoform a MAGI1 0.007 membrane associated guanylate kinase, WW and PDZ dom... WIPF1 0.007 WAS/WASL interacting protein family, member 1 [Homo... WIPF1 0.007 WAS/WASL interacting protein family, member 1 RAPH1 0.007 Ras association and pleckstrin homology domains 1 is... SYNPO2L 0.007 synaptopodin 2-like isoform a MAGI1 0.007 membrane associated guanylate kinase, WW and PDZ dom... WIPF2 0.007 WIRE protein MAGI1 0.007 membrane associated guanylate kinase, WW and PDZ dom... ABI1 0.006 abl-interactor 1 isoform c Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.