Guide to the Human Genome
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Name: CADM2 Sequence: fasta or formatted (437aa) NCBI GI: 54607031
Description:

immunoglobulin superfamily, member 4D

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         31           3
 C cysteine            1.8          8           1
 D aspartate           6.2         27           2
 E glutamate           5.5         24           2
 F phenylalanine       3.2         14           1
 G glycine             5.7         25           2
 H histidine           1.4          6           1
 I isoleucine          5.5         24           2
 K lysine              5.7         25           2
 L leucine             9.2         40           2
 M methionine          1.4          6           1
 N asparagine          4.6         20           1
 P proline             5.9         26           1
 Q glutamine           3.9         17           2
 R arginine            3.4         15           1
 S serine              8.0         35           2
 T threonine           9.8         43           3
 V valine              8.5         37           3
 W tryptophan          0.9          4           1
 Y tyrosine            2.3         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   immunoglobulin superfamily, member 4D 
CADM3                 0.428   cell adhesion molecule 3 isoform 1 
CADM3                 0.426   cell adhesion molecule 3 isoform 2 
CADM1                 0.375   immunoglobulin superfamily, member 4D isoform 1 [Ho...
CADM1                 0.339   immunoglobulin superfamily, member 4D isoform 2 [Ho...
CADM4                 0.249   cell adhesion molecule 4 
KIRREL                0.084   kin of IRRE like 
NTM                   0.076   neurotrimin isoform 4 
NTM                   0.076   neurotrimin isoform 3 
PVRL2                 0.076   poliovirus receptor related 2 isoform delta precurs...
NTM                   0.076   neurotrimin isoform 1 
CRTAM                 0.074   class-I MHC-restricted T cell associated molecule [H...
NTM                   0.074   neurotrimin isoform 2 
PVRL3                 0.074   poliovirus receptor-related 3 
PXDN                  0.073   peroxidasin 
OPCML                 0.073   opioid binding protein/cell adhesion molecule-like is...
LSAMP                 0.073   limbic system-associated membrane protein 
OPCML                 0.072   opioid binding protein/cell adhesion molecule-like i...
VCAM1                 0.071   vascular cell adhesion molecule 1 isoform a precursor...
VCAM1                 0.069   vascular cell adhesion molecule 1 isoform b precurso...
IGLON5                0.069   IgLON family member 5 
TTN                   0.067   titin isoform N2-A 
NEO1                  0.067   neogenin homolog 1 
PVRL2                 0.067   poliovirus receptor related 2 isoform alpha precursor...
NCAM2                 0.065   neural cell adhesion molecule 2 precursor 
LOC100292387          0.065   PREDICTED: similar to hemicentin 2 
HMCN2                 0.065   PREDICTED: hemicentin 2 
HMCN1                 0.065   hemicentin 1 
PXDNL                 0.063   peroxidasin homolog-like 
KIRREL2               0.063   kin of IRRE-like 2 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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