Guide to the Human Genome
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Name: PXDN Sequence: fasta or formatted (1479aa) NCBI GI: 109150416
Description:

peroxidasin

Referenced in:

Leucine-rich Repeat Family
Superoxide Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         97           3
 C cysteine            3.1         46           2
 D aspartate           5.1         75           2
 E glutamate           5.5         82           2
 F phenylalanine       4.0         59           2
 G glycine             6.4         95           2
 H histidine           3.1         46           1
 I isoleucine          5.1         75           2
 K lysine              3.0         45           2
 L leucine             9.6        142           3
 M methionine          1.6         24           1
 N asparagine          5.4         80           3
 P proline             6.2         92           3
 Q glutamine           4.8         71           1
 R arginine            7.2        106           2
 S serine              6.5         96           2
 T threonine           6.9        102           2
 V valine              6.4         94           2
 W tryptophan          0.9         14           1
 Y tyrosine            2.6         38           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peroxidasin 
PXDNL                 0.596   peroxidasin homolog-like 
TPO                   0.171   thyroid peroxidase isoform a 
TPO                   0.171   thyroid peroxidase isoform d 
EPX                   0.164   eosinophil peroxidase 
MPO                   0.161   myeloperoxidase 
LPO                   0.142   lactoperoxidase isoform 1 preproprotein 
LPO                   0.141   lactoperoxidase isoform 3 preproprotein 
TPO                   0.139   thyroid peroxidase isoform b 
TPO                   0.077   thyroid peroxidase isoform e 
LRIG1                 0.067   leucine-rich repeats and immunoglobulin-like domains...
LRIG3                 0.065   leucine-rich repeats and immunoglobulin-like domains...
LRIG3                 0.065   leucine-rich repeats and immunoglobulin-like domain...
ROBO1                 0.060   roundabout 1 isoform b 
ROBO2                 0.060   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.060   roundabout, axon guidance receptor, homolog 2 isofor...
ROBO1                 0.060   roundabout 1 isoform a 
LRIG2                 0.059   leucine-rich repeats and immunoglobulin-like domains ...
ROBO1                 0.058   roundabout 1 isoform d 
ROBO1                 0.058   roundabout 1 isoform c 
LOC642132             0.058   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.058   PREDICTED: similar to roundabout 1 isoform 2 
HMCN1                 0.058   hemicentin 1 
ROBO3                 0.058   roundabout, axon guidance receptor, homolog 3 
LOC100292387          0.056   PREDICTED: similar to hemicentin 2 
HMCN2                 0.054   PREDICTED: hemicentin 2 
HMCN2                 0.054   PREDICTED: hemicentin 2 
HMCN2                 0.054   PREDICTED: hemicentin 2 
DCC                   0.050   deleted in colorectal carcinoma 
MXRA5                 0.049   adlican 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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