Guide to the Human Genome
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Name: CADM4 Sequence: fasta or formatted (388aa) NCBI GI: 21686977
Description:

cell adhesion molecule 4

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         36           4
 C cysteine            2.1          8           1
 D aspartate           3.9         15           2
 E glutamate           8.2         32           2
 F phenylalanine       2.8         11           2
 G glycine             8.5         33           2
 H histidine           2.3          9           2
 I isoleucine          3.9         15           3
 K lysine              2.6         10           1
 L leucine             9.0         35           4
 M methionine          0.5          2           1
 N asparagine          3.4         13           1
 P proline             4.1         16           1
 Q glutamine           5.4         21           1
 R arginine            8.0         31           2
 S serine              5.7         22           3
 T threonine           5.7         22           1
 V valine             10.3         40           2
 W tryptophan          1.5          6           1
 Y tyrosine            2.8         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cell adhesion molecule 4 
CADM1                 0.359   immunoglobulin superfamily, member 4D isoform 2 [Ho...
CADM1                 0.351   immunoglobulin superfamily, member 4D isoform 1 [Ho...
CADM2                 0.279   immunoglobulin superfamily, member 4D 
CADM3                 0.274   cell adhesion molecule 3 isoform 2 
CADM3                 0.268   cell adhesion molecule 3 isoform 1 
KIRREL                0.105   kin of IRRE like 
KIRREL2               0.099   kin of IRRE-like 2 isoform c 
KIRREL2               0.099   kin of IRRE-like 2 isoform a 
KIRREL3               0.091   kin of IRRE like 3 isoform 2 
KIRREL3               0.091   kin of IRRE like 3 isoform 1 
KIRREL2               0.091   kin of IRRE-like 2 isoform b 
HSPG2                 0.078   heparan sulfate proteoglycan 2 
HMCN2                 0.073   PREDICTED: hemicentin 2 
HMCN2                 0.073   PREDICTED: hemicentin 2 
PVRL1                 0.069   poliovirus receptor-related 1 isoform 1 
HMCN2                 0.069   PREDICTED: hemicentin 2 
ROBO3                 0.066   roundabout, axon guidance receptor, homolog 3 
SIGLEC8               0.065   sialic acid binding Ig-like lectin 8 
PVRL3                 0.064   poliovirus receptor-related 3 
OPCML                 0.062   opioid binding protein/cell adhesion molecule-like i...
OPCML                 0.062   opioid binding protein/cell adhesion molecule-like is...
ROBO2                 0.062   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.062   roundabout, axon guidance receptor, homolog 2 isofor...
PVRL2                 0.061   poliovirus receptor related 2 isoform delta precurs...
NCAM2                 0.061   neural cell adhesion molecule 2 precursor 
PVRL4                 0.061   poliovirus receptor-related 4 
SDK1                  0.060   sidekick 1 
BCAM                  0.060   basal cell adhesion molecule isoform 1 precursor [Ho...
MCAM                  0.060   melanoma cell adhesion molecule 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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