Guide to the Human Genome
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Name: OPCML Sequence: fasta or formatted (345aa) NCBI GI: 4505505
Description:

opioid binding protein/cell adhesion molecule-like isoform a preproprotein

Referenced in:

Neurons

Other entries for this name:
alt prot [338aa] opioid binding protein/cell adhesion molecule-like isoform b prep...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         21           2
 C cysteine            2.6          9           1
 D aspartate           5.2         18           2
 E glutamate           4.6         16           2
 F phenylalanine       3.2         11           2
 G glycine             7.0         24           1
 H histidine           1.2          4           1
 I isoleucine          6.1         21           2
 K lysine              4.6         16           1
 L leucine             8.4         29           2
 M methionine          2.0          7           1
 N asparagine          5.2         18           1
 P proline             4.9         17           2
 Q glutamine           2.9         10           1
 R arginine            4.9         17           1
 S serine              7.8         27           2
 T threonine           7.8         27           1
 V valine             10.1         35           3
 W tryptophan          1.7          6           1
 Y tyrosine            3.5         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   opioid binding protein/cell adhesion molecule-like is... 
OPCML                 0.920   opioid binding protein/cell adhesion molecule-like i...
NTM                   0.774   neurotrimin isoform 1 
NTM                   0.763   neurotrimin isoform 3 
NTM                   0.733   neurotrimin isoform 4 
NTM                   0.691   neurotrimin isoform 2 
LSAMP                 0.509   limbic system-associated membrane protein 
NEGR1                 0.438   neuronal growth regulator 1 
IGLON5                0.427   IgLON family member 5 
IGSF9B                0.123   immunoglobulin superfamily, member 9B 
PXDN                  0.111   peroxidasin 
HMCN1                 0.111   hemicentin 1 
LOC100292387          0.108   PREDICTED: similar to hemicentin 2 
HMCN2                 0.108   PREDICTED: hemicentin 2 
LOC100289200          0.108   PREDICTED: hypothetical protein XP_002342997 
TTN                   0.107   titin isoform N2-A 
PXDNL                 0.105   peroxidasin homolog-like 
HSPG2                 0.105   heparan sulfate proteoglycan 2 
NCAM1                 0.101   neural cell adhesion molecule 1 isoform 1 
NCAM1                 0.101   neural cell adhesion molecule 1 isoform 3 
HMCN2                 0.099   PREDICTED: hemicentin 2 
HMCN2                 0.099   PREDICTED: hemicentin 2 
NCAM2                 0.099   neural cell adhesion molecule 2 precursor 
NCAM1                 0.099   neural cell adhesion molecule 1 isoform 2 
IGSF9                 0.092   immunoglobulin superfamily, member 9 isoform a [Hom...
CADM2                 0.092   immunoglobulin superfamily, member 4D 
IGSF9                 0.092   immunoglobulin superfamily, member 9 isoform b [Hom...
CNTN5                 0.091   contactin 5 isoform long 
CNTN5                 0.091   contactin 5 isoform short 
ROBO2                 0.089   roundabout, axon guidance receptor, homolog 2 isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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