LSAMP 30045

Name: LSAMP	Sequence: fasta or formatted (338aa)		NCBI GI: 45594240
Description: limbic system-associated membrane protein		Referenced in: Neurons
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.6 19 2 C cysteine 2.7 9 1 D aspartate 4.1 14 2 E glutamate 7.4 25 3 F phenylalanine 1.5 5 1 G glycine 5.9 20 1 H histidine 1.5 5 1 I isoleucine 4.7 16 2 K lysine 5.0 17 1 L leucine 10.1 34 2 M methionine 0.6 2 1 N asparagine 5.3 18 1 P proline 5.0 17 2 Q glutamine 3.6 12 1 R arginine 6.2 21 2 S serine 8.9 30 2 T threonine 7.4 25 2 V valine 10.1 34 2 W tryptophan 1.5 5 1 Y tyrosine 3.0 10 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 limbic system-associated membrane protein NTM 0.534 neurotrimin isoform 1 OPCML 0.525 opioid binding protein/cell adhesion molecule-like is... NTM 0.522 neurotrimin isoform 3 NEGR1 0.519 neuronal growth regulator 1 NTM 0.515 neurotrimin isoform 2 NTM 0.510 neurotrimin isoform 4 OPCML 0.502 opioid binding protein/cell adhesion molecule-like i... IGLON5 0.418 IgLON family member 5 HMCN1 0.129 hemicentin 1 LOC100292387 0.127 PREDICTED: similar to hemicentin 2 HMCN2 0.127 PREDICTED: hemicentin 2 LOC100289200 0.127 PREDICTED: hypothetical protein XP_002342997 NCAM1 0.126 neural cell adhesion molecule 1 isoform 1 NCAM1 0.126 neural cell adhesion molecule 1 isoform 3 NCAM1 0.118 neural cell adhesion molecule 1 isoform 2 HMCN2 0.115 PREDICTED: hemicentin 2 HMCN2 0.115 PREDICTED: hemicentin 2 NCAM2 0.115 neural cell adhesion molecule 2 precursor PXDN 0.110 peroxidasin PXDNL 0.106 peroxidasin homolog-like IGSF9B 0.104 immunoglobulin superfamily, member 9B TTN 0.098 titin isoform N2-A CHL1 0.095 cell adhesion molecule with homology to L1CAM precur... CADM2 0.095 immunoglobulin superfamily, member 4D ROBO2 0.093 roundabout, axon guidance receptor, homolog 2 isofo... ROBO2 0.093 roundabout, axon guidance receptor, homolog 2 isofor... ROBO3 0.092 roundabout, axon guidance receptor, homolog 3 CDON 0.090 surface glycoprotein, Ig superfamily member CNTN5 0.090 contactin 5 isoform long Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.