Guide to the Human Genome
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Name: NCAM2 Sequence: fasta or formatted (837aa) NCBI GI: 33519481
Description:

neural cell adhesion molecule 2 precursor

Referenced in:

Protein Glycosylation
Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         46           2
 C cysteine            1.7         14           1
 D aspartate           4.8         40           2
 E glutamate           8.7         73           2
 F phenylalanine       2.9         24           2
 G glycine             7.2         60           2
 H histidine           1.8         15           2
 I isoleucine          7.9         66           2
 K lysine              6.9         58           2
 L leucine             7.2         60           3
 M methionine          1.4         12           1
 N asparagine          5.1         43           3
 P proline             5.0         42           2
 Q glutamine           4.2         35           1
 R arginine            4.2         35           2
 S serine              8.1         68           3
 T threonine           6.0         50           2
 V valine              7.0         59           3
 W tryptophan          1.1          9           1
 Y tyrosine            3.3         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neural cell adhesion molecule 2 precursor 
NCAM1                 0.413   neural cell adhesion molecule 1 isoform 1 
NCAM1                 0.411   neural cell adhesion molecule 1 isoform 2 
NCAM1                 0.327   neural cell adhesion molecule 1 isoform 3 
TTN                   0.088   titin isoform N2-A 
HMCN1                 0.083   hemicentin 1 
SDK1                  0.083   sidekick 1 
NRCAM                 0.082   neuronal cell adhesion molecule isoform B precursor ...
DSCAM                 0.082   Down syndrome cell adhesion molecule isoform CHD2-42...
NRCAM                 0.077   neuronal cell adhesion molecule isoform A precursor ...
LOC100292387          0.076   PREDICTED: similar to hemicentin 2 
HMCN2                 0.076   PREDICTED: hemicentin 2 
L1CAM                 0.074   L1 cell adhesion molecule isoform 3 precursor [Homo...
L1CAM                 0.074   L1 cell adhesion molecule isoform 2 precursor 
L1CAM                 0.074   L1 cell adhesion molecule isoform 1 precursor 
ROBO2                 0.074   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.074   roundabout, axon guidance receptor, homolog 2 isofor...
HMCN2                 0.074   PREDICTED: hemicentin 2 
CNTN5                 0.074   contactin 5 isoform long 
CNTN5                 0.074   contactin 5 isoform short 
ROBO1                 0.074   roundabout 1 isoform b 
HMCN2                 0.074   PREDICTED: hemicentin 2 
PXDN                  0.073   peroxidasin 
ROBO1                 0.072   roundabout 1 isoform d 
ROBO1                 0.072   roundabout 1 isoform c 
LOC642132             0.072   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.072   PREDICTED: similar to roundabout 1 isoform 2 
DSCAML1               0.071   Down syndrome cell adhesion molecule like 1 
ROBO1                 0.071   roundabout 1 isoform a 
PXDNL                 0.071   peroxidasin homolog-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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