Guide to the Human Genome
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Name: PVRL2 Sequence: fasta or formatted (479aa) NCBI GI: 5360210
Description:

poliovirus receptor related 2 isoform alpha precursor

Referenced in:

Additional Immunoglobulin-related Receptors

Other entries for this name:
alt prot [538aa] poliovirus receptor related 2 isoform delta precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         39           3
 C cysteine            1.3          6           1
 D aspartate           4.8         23           2
 E glutamate           6.9         33           8
 F phenylalanine       3.1         15           1
 G glycine             9.2         44           3
 H histidine           1.3          6           1
 I isoleucine          2.1         10           1
 K lysine              3.1         15           1
 L leucine            10.6         51           7
 M methionine          1.5          7           1
 N asparagine          1.9          9           1
 P proline             9.2         44           4
 Q glutamine           3.5         17           1
 R arginine            5.4         26           4
 S serine              7.5         36           2
 T threonine           7.7         37           2
 V valine              9.2         44           2
 W tryptophan          1.9          9           1
 Y tyrosine            1.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   poliovirus receptor related 2 isoform alpha precursor... 
PVRL2                 0.735   poliovirus receptor related 2 isoform delta precurs...
PVR                   0.329   poliovirus receptor isoform delta 
PVR                   0.329   poliovirus receptor isoform alpha 
PVR                   0.328   poliovirus receptor isoform gamma 
PVR                   0.326   poliovirus receptor isoform beta 
PVRL1                 0.199   poliovirus receptor-related 1 isoform 1 
PVRL1                 0.185   poliovirus receptor-related 1 isoform 2 
PVRL1                 0.166   poliovirus receptor-related 1 isoform 3 
PVRL3                 0.140   poliovirus receptor-related 3 
PVRL4                 0.096   poliovirus receptor-related 4 
CADM1                 0.066   immunoglobulin superfamily, member 4D isoform 2 [Ho...
CADM1                 0.065   immunoglobulin superfamily, member 4D isoform 1 [Ho...
CADM2                 0.060   immunoglobulin superfamily, member 4D 
CADM3                 0.055   cell adhesion molecule 3 isoform 2 
CADM3                 0.055   cell adhesion molecule 3 isoform 1 
CADM4                 0.047   cell adhesion molecule 4 
KIRREL2               0.043   kin of IRRE-like 2 isoform c 
KIRREL2               0.043   kin of IRRE-like 2 isoform a 
KIRREL2               0.038   kin of IRRE-like 2 isoform b 
SIGLEC8               0.033   sialic acid binding Ig-like lectin 8 
CD200                 0.032   CD200 antigen isoform b 
CD200                 0.032   CD200 antigen isoform a precursor 
HMCN1                 0.031   hemicentin 1 
TAPBPL                0.030   TAP binding protein-like 
CEACAM5               0.030   carcinoembryonic antigen-related cell adhesion molec...
SIGLEC7               0.028   sialic acid binding Ig-like lectin 7 isoform 1 
HMCN2                 0.028   PREDICTED: hemicentin 2 
HMCN2                 0.028   PREDICTED: hemicentin 2 
HMCN2                 0.028   PREDICTED: hemicentin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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