Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PXDNL Sequence: fasta or formatted (1463aa) NCBI GI: 126517478
Description:

peroxidasin homolog-like

Referenced in:

Superoxide Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6        111           3
 C cysteine            3.1         46           2
 D aspartate           5.2         76           2
 E glutamate           5.5         80           2
 F phenylalanine       4.0         58           1
 G glycine             6.2         91           2
 H histidine           3.3         48           1
 I isoleucine          4.3         63           2
 K lysine              3.6         52           2
 L leucine             9.9        145           3
 M methionine          1.5         22           1
 N asparagine          4.2         62           3
 P proline             6.6         96           3
 Q glutamine           5.4         79           2
 R arginine            7.0        103           2
 S serine              6.5         95           2
 T threonine           6.3         92           2
 V valine              6.0         88           2
 W tryptophan          1.4         21           1
 Y tyrosine            2.4         35           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peroxidasin homolog-like 
PXDN                  0.600   peroxidasin 
TPO                   0.150   thyroid peroxidase isoform a 
TPO                   0.150   thyroid peroxidase isoform d 
EPX                   0.142   eosinophil peroxidase 
MPO                   0.138   myeloperoxidase 
LPO                   0.125   lactoperoxidase isoform 1 preproprotein 
LPO                   0.124   lactoperoxidase isoform 3 preproprotein 
TPO                   0.123   thyroid peroxidase isoform b 
TPO                   0.067   thyroid peroxidase isoform e 
LRIG1                 0.065   leucine-rich repeats and immunoglobulin-like domains...
LRIG3                 0.063   leucine-rich repeats and immunoglobulin-like domains...
LRIG3                 0.063   leucine-rich repeats and immunoglobulin-like domain...
LRIG2                 0.058   leucine-rich repeats and immunoglobulin-like domains ...
ROBO1                 0.056   roundabout 1 isoform b 
ROBO1                 0.056   roundabout 1 isoform a 
ROBO1                 0.055   roundabout 1 isoform d 
ROBO1                 0.055   roundabout 1 isoform c 
LOC642132             0.055   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.055   PREDICTED: similar to roundabout 1 isoform 2 
ROBO3                 0.054   roundabout, axon guidance receptor, homolog 3 
ROBO2                 0.053   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.053   roundabout, axon guidance receptor, homolog 2 isofor...
HMCN2                 0.050   PREDICTED: hemicentin 2 
LOC100292387          0.050   PREDICTED: similar to hemicentin 2 
HMCN2                 0.050   PREDICTED: hemicentin 2 
HMCN2                 0.050   PREDICTED: hemicentin 2 
HMCN1                 0.050   hemicentin 1 
IGDCC3                0.044   putative neuronal cell adhesion molecule 
IGSF10                0.043   immunoglobulin superfamily, member 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press