Guide to the Human Genome
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Name: KIRREL Sequence: fasta or formatted (757aa) NCBI GI: 166295173
Description:

kin of IRRE like

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         60           2
 C cysteine            1.5         11           1
 D aspartate           5.7         43           2
 E glutamate           5.9         45           2
 F phenylalanine       3.3         25           3
 G glycine             7.1         54           2
 H histidine           1.7         13           2
 I isoleucine          4.8         36           2
 K lysine              3.3         25           2
 L leucine             7.7         58           3
 M methionine          1.2          9           1
 N asparagine          3.7         28           2
 P proline             6.6         50           3
 Q glutamine           4.0         30           2
 R arginine            6.3         48           3
 S serine              7.3         55           2
 T threonine           9.2         70           3
 V valine              7.3         55           2
 W tryptophan          1.3         10           1
 Y tyrosine            4.2         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   kin of IRRE like 
KIRREL3               0.391   kin of IRRE like 3 isoform 1 
KIRREL3               0.361   kin of IRRE like 3 isoform 2 
KIRREL2               0.273   kin of IRRE-like 2 isoform a 
KIRREL2               0.271   kin of IRRE-like 2 isoform c 
KIRREL2               0.243   kin of IRRE-like 2 isoform b 
NPHS1                 0.059   nephrin precursor 
ROBO3                 0.054   roundabout, axon guidance receptor, homolog 3 
ROBO2                 0.054   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.054   roundabout, axon guidance receptor, homolog 2 isofor...
CADM4                 0.052   cell adhesion molecule 4 
TTN                   0.051   titin isoform N2-A 
NCAM2                 0.050   neural cell adhesion molecule 2 precursor 
HMCN1                 0.049   hemicentin 1 
CADM2                 0.047   immunoglobulin superfamily, member 4D 
HMCN2                 0.046   PREDICTED: hemicentin 2 
HMCN2                 0.046   PREDICTED: hemicentin 2 
HMCN2                 0.046   PREDICTED: hemicentin 2 
LOC100292387          0.044   PREDICTED: similar to hemicentin 2 
MCAM                  0.041   melanoma cell adhesion molecule 
ROBO1                 0.040   roundabout 1 isoform b 
ROBO1                 0.040   roundabout 1 isoform a 
CADM3                 0.039   cell adhesion molecule 3 isoform 2 
CADM3                 0.039   cell adhesion molecule 3 isoform 1 
LOC100289200          0.039   PREDICTED: hypothetical protein XP_002342997 
SDK2                  0.038   sidekick 2 
ROBO1                 0.038   roundabout 1 isoform d 
ROBO1                 0.038   roundabout 1 isoform c 
LOC642132             0.038   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.038   PREDICTED: similar to roundabout 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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