Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: NTM Sequence: fasta or formatted (344aa) NCBI GI: 115298665
Description:

neurotrimin isoform 2

Referenced in:

Gene Structure
Neurons
Additional Genes in Development

Other entries for this name:
alt prot [355aa] neurotrimin isoform 3
alt prot [316aa] neurotrimin isoform 4
alt prot [344aa] neurotrimin isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         21           2
 C cysteine            2.6          9           1
 D aspartate           4.4         15           2
 E glutamate           5.2         18           1
 F phenylalanine       2.9         10           2
 G glycine             6.7         23           1
 H histidine           2.0          7           1
 I isoleucine          6.1         21           1
 K lysine              5.2         18           2
 L leucine             7.6         26           3
 M methionine          1.2          4           1
 N asparagine          5.5         19           2
 P proline             5.2         18           2
 Q glutamine           3.8         13           1
 R arginine            4.9         17           2
 S serine              8.4         29           2
 T threonine           7.0         24           1
 V valine             10.2         35           2
 W tryptophan          1.7          6           1
 Y tyrosine            3.2         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neurotrimin isoform 2 
NTM                   0.919   neurotrimin isoform 1 
NTM                   0.905   neurotrimin isoform 3 
NTM                   0.824   neurotrimin isoform 4 
OPCML                 0.708   opioid binding protein/cell adhesion molecule-like i...
OPCML                 0.690   opioid binding protein/cell adhesion molecule-like is...
LSAMP                 0.498   limbic system-associated membrane protein 
NEGR1                 0.437   neuronal growth regulator 1 
IGLON5                0.399   IgLON family member 5 
LOC100292387          0.119   PREDICTED: similar to hemicentin 2 
HMCN2                 0.119   PREDICTED: hemicentin 2 
LOC100289200          0.119   PREDICTED: hypothetical protein XP_002342997 
IGSF9B                0.119   immunoglobulin superfamily, member 9B 
HMCN1                 0.116   hemicentin 1 
NCAM1                 0.114   neural cell adhesion molecule 1 isoform 1 
NCAM1                 0.114   neural cell adhesion molecule 1 isoform 3 
NCAM1                 0.110   neural cell adhesion molecule 1 isoform 2 
TTN                   0.107   titin isoform N2-A 
PXDN                  0.107   peroxidasin 
MDGA1                 0.098   MAM domain containing glycosylphosphatidylinositol a...
CNTN2                 0.096   contactin 2 precursor 
CNTN1                 0.095   contactin 1 isoform 1 precursor 
CNTN1                 0.095   contactin 1 isoform 2 precursor 
CADM2                 0.093   immunoglobulin superfamily, member 4D 
LRIG2                 0.092   leucine-rich repeats and immunoglobulin-like domains ...
HMCN2                 0.090   PREDICTED: hemicentin 2 
HMCN2                 0.090   PREDICTED: hemicentin 2 
MDGA2                 0.089   MAM domain containing 1 isoform 1 
DSCAM                 0.087   Down syndrome cell adhesion molecule isoform CHD2-42...
CNTN6                 0.087   contactin 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press