Guide to the Human Genome
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Name: CADM3 Sequence: fasta or formatted (398aa) NCBI GI: 187608363
Description:

cell adhesion molecule 3 isoform 2

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [432aa] cell adhesion molecule 3 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         28           2
 C cysteine            2.0          8           2
 D aspartate           5.5         22           2
 E glutamate           5.3         21           1
 F phenylalanine       2.8         11           1
 G glycine             7.8         31           2
 H histidine           2.5         10           1
 I isoleucine          5.5         22           2
 K lysine              5.0         20           2
 L leucine             9.5         38           7
 M methionine          1.5          6           1
 N asparagine          3.3         13           1
 P proline             6.3         25           2
 Q glutamine           4.5         18           2
 R arginine            3.8         15           1
 S serine              9.8         39           4
 T threonine           7.8         31           1
 V valine              5.5         22           2
 W tryptophan          1.3          5           1
 Y tyrosine            3.3         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cell adhesion molecule 3 isoform 2 
CADM3                 0.977   cell adhesion molecule 3 isoform 1 
CADM2                 0.460   immunoglobulin superfamily, member 4D 
CADM1                 0.326   immunoglobulin superfamily, member 4D isoform 2 [Ho...
CADM1                 0.322   immunoglobulin superfamily, member 4D isoform 1 [Ho...
CADM4                 0.264   cell adhesion molecule 4 
PVR                   0.091   poliovirus receptor isoform delta 
PVR                   0.091   poliovirus receptor isoform alpha 
CRTAM                 0.089   class-I MHC-restricted T cell associated molecule [H...
KIRREL3               0.088   kin of IRRE like 3 isoform 2 
KIRREL3               0.088   kin of IRRE like 3 isoform 1 
PVR                   0.079   poliovirus receptor isoform beta 
NEGR1                 0.079   neuronal growth regulator 1 
KIRREL                0.075   kin of IRRE like 
PVRL2                 0.074   poliovirus receptor related 2 isoform delta precurs...
PVR                   0.074   poliovirus receptor isoform gamma 
PVRL4                 0.074   poliovirus receptor-related 4 
PVRL1                 0.073   poliovirus receptor-related 1 isoform 2 
PVRL3                 0.073   poliovirus receptor-related 3 
IGLON5                0.072   IgLON family member 5 
LSAMP                 0.072   limbic system-associated membrane protein 
PVRL1                 0.070   poliovirus receptor-related 1 isoform 1 
PVRL2                 0.066   poliovirus receptor related 2 isoform alpha precursor...
ALCAM                 0.065   activated leukocyte cell adhesion molecule 
OPCML                 0.064   opioid binding protein/cell adhesion molecule-like i...
CEACAM5               0.063   carcinoembryonic antigen-related cell adhesion molec...
NTM                   0.063   neurotrimin isoform 2 
OPCML                 0.061   opioid binding protein/cell adhesion molecule-like is...
TTN                   0.060   titin isoform N2-A 
SIRPA                 0.060   signal-regulatory protein alpha precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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