Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CADM1 Sequence: fasta or formatted (414aa) NCBI GI: 148664211
Description:

immunoglobulin superfamily, member 4D isoform 2

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [442aa] immunoglobulin superfamily, member 4D isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         36           8
 C cysteine            1.9          8           1
 D aspartate           5.8         24           2
 E glutamate           6.8         28           2
 F phenylalanine       3.1         13           1
 G glycine             6.3         26           2
 H histidine           1.9          8           1
 I isoleucine          5.6         23           2
 K lysine              4.6         19           2
 L leucine             8.9         37           5
 M methionine          2.4         10           1
 N asparagine          4.6         19           2
 P proline             4.6         19           2
 Q glutamine           4.8         20           1
 R arginine            4.1         17           1
 S serine              6.0         25           3
 T threonine           6.8         28           2
 V valine              8.7         36           3
 W tryptophan          0.7          3           1
 Y tyrosine            3.6         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   immunoglobulin superfamily, member 4D isoform 2 [Ho... 
CADM1                 0.981   immunoglobulin superfamily, member 4D isoform 1 [Ho...
CADM2                 0.358   immunoglobulin superfamily, member 4D 
CADM4                 0.338   cell adhesion molecule 4 
CADM3                 0.318   cell adhesion molecule 3 isoform 2 
CADM3                 0.310   cell adhesion molecule 3 isoform 1 
PVRL3                 0.097   poliovirus receptor-related 3 
CRTAM                 0.086   class-I MHC-restricted T cell associated molecule [H...
PVRL4                 0.082   poliovirus receptor-related 4 
PVR                   0.082   poliovirus receptor isoform delta 
PVR                   0.082   poliovirus receptor isoform alpha 
PVRL2                 0.080   poliovirus receptor related 2 isoform delta precurs...
PVRL2                 0.077   poliovirus receptor related 2 isoform alpha precursor...
PVRL1                 0.074   poliovirus receptor-related 1 isoform 1 
PVR                   0.074   poliovirus receptor isoform beta 
PVR                   0.072   poliovirus receptor isoform gamma 
PVRL1                 0.070   poliovirus receptor-related 1 isoform 2 
TTN                   0.069   titin isoform N2-A 
NTM                   0.067   neurotrimin isoform 4 
NTM                   0.067   neurotrimin isoform 3 
NTM                   0.067   neurotrimin isoform 1 
PVRL1                 0.065   poliovirus receptor-related 1 isoform 3 
CNTNAP2               0.064   cell recognition molecule Caspr2 precursor 
NTM                   0.062   neurotrimin isoform 2 
OPCML                 0.061   opioid binding protein/cell adhesion molecule-like is...
LSAMP                 0.061   limbic system-associated membrane protein 
HSPG2                 0.061   heparan sulfate proteoglycan 2 
LOC100292387          0.060   PREDICTED: similar to hemicentin 2 
IGLON5                0.060   IgLON family member 5 
KIRREL                0.059   kin of IRRE like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press