Guide to the Human Genome
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Name: NTM Sequence: fasta or formatted (316aa) NCBI GI: 221316762
Description:

neurotrimin isoform 4

Referenced in:

Neurons
Additional Genes in Development

Other entries for this name:
alt prot [344aa] neurotrimin isoform 2
alt prot [355aa] neurotrimin isoform 3
alt prot [344aa] neurotrimin isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         16           2
 C cysteine            2.8          9           1
 D aspartate           4.7         15           2
 E glutamate           5.7         18           1
 F phenylalanine       2.8          9           2
 G glycine             6.6         21           1
 H histidine           1.6          5           1
 I isoleucine          5.7         18           1
 K lysine              5.1         16           2
 L leucine             7.3         23           2
 M methionine          0.9          3           1
 N asparagine          5.4         17           2
 P proline             5.4         17           2
 Q glutamine           3.5         11           1
 R arginine            5.1         16           2
 S serine              7.9         25           2
 T threonine           7.3         23           1
 V valine             11.7         37           3
 W tryptophan          1.6          5           1
 Y tyrosine            3.8         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neurotrimin isoform 4 
NTM                   0.989   neurotrimin isoform 1 
NTM                   0.985   neurotrimin isoform 3 
NTM                   0.898   neurotrimin isoform 2 
OPCML                 0.798   opioid binding protein/cell adhesion molecule-like is...
OPCML                 0.711   opioid binding protein/cell adhesion molecule-like i...
LSAMP                 0.538   limbic system-associated membrane protein 
NEGR1                 0.473   neuronal growth regulator 1 
IGLON5                0.423   IgLON family member 5 
LOC100292387          0.129   PREDICTED: similar to hemicentin 2 
HMCN2                 0.129   PREDICTED: hemicentin 2 
LOC100289200          0.129   PREDICTED: hypothetical protein XP_002342997 
IGSF9B                0.126   immunoglobulin superfamily, member 9B 
HMCN1                 0.126   hemicentin 1 
NCAM1                 0.124   neural cell adhesion molecule 1 isoform 1 
NCAM1                 0.124   neural cell adhesion molecule 1 isoform 3 
NCAM1                 0.120   neural cell adhesion molecule 1 isoform 2 
TTN                   0.116   titin isoform N2-A 
PXDN                  0.116   peroxidasin 
MDGA1                 0.107   MAM domain containing glycosylphosphatidylinositol a...
CNTN2                 0.105   contactin 2 precursor 
CADM2                 0.103   immunoglobulin superfamily, member 4D 
CNTN1                 0.103   contactin 1 isoform 1 precursor 
CNTN1                 0.103   contactin 1 isoform 2 precursor 
LRIG2                 0.100   leucine-rich repeats and immunoglobulin-like domains ...
HMCN2                 0.099   PREDICTED: hemicentin 2 
HMCN2                 0.099   PREDICTED: hemicentin 2 
MDGA2                 0.097   MAM domain containing 1 isoform 1 
CNTN5                 0.095   contactin 5 isoform long 
CNTN5                 0.095   contactin 5 isoform short 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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