Guide to the Human Genome
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Name: IGLON5 Sequence: fasta or formatted (336aa) NCBI GI: 157819143
Description:

IgLON family member 5

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         33           4
 C cysteine            2.1          7           1
 D aspartate           3.9         13           2
 E glutamate           5.4         18           2
 F phenylalanine       2.1          7           1
 G glycine             7.1         24           2
 H histidine           1.5          5           1
 I isoleucine          3.9         13           1
 K lysine              0.6          2           1
 L leucine            12.2         41           2
 M methionine          1.5          5           1
 N asparagine          5.4         18           1
 P proline             6.2         21           3
 Q glutamine           2.7          9           1
 R arginine            8.6         29           2
 S serine              7.7         26           2
 T threonine           7.1         24           2
 V valine              7.1         24           1
 W tryptophan          2.1          7           2
 Y tyrosine            3.0         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   IgLON family member 5 
OPCML                 0.440   opioid binding protein/cell adhesion molecule-like is...
OPCML                 0.439   opioid binding protein/cell adhesion molecule-like i...
LSAMP                 0.417   limbic system-associated membrane protein 
NTM                   0.413   neurotrimin isoform 1 
NTM                   0.411   neurotrimin isoform 2 
NTM                   0.404   neurotrimin isoform 3 
NTM                   0.401   neurotrimin isoform 4 
NEGR1                 0.358   neuronal growth regulator 1 
NCAM1                 0.110   neural cell adhesion molecule 1 isoform 1 
NCAM1                 0.110   neural cell adhesion molecule 1 isoform 3 
LOC100292387          0.102   PREDICTED: similar to hemicentin 2 
HMCN2                 0.102   PREDICTED: hemicentin 2 
LOC100289200          0.102   PREDICTED: hypothetical protein XP_002342997 
NCAM1                 0.102   neural cell adhesion molecule 1 isoform 2 
TTN                   0.101   titin isoform N2-A 
HMCN2                 0.101   PREDICTED: hemicentin 2 
HMCN2                 0.101   PREDICTED: hemicentin 2 
CNTN2                 0.093   contactin 2 precursor 
NCAM2                 0.093   neural cell adhesion molecule 2 precursor 
HSPG2                 0.092   heparan sulfate proteoglycan 2 
LRIG1                 0.090   leucine-rich repeats and immunoglobulin-like domains...
CADM2                 0.089   immunoglobulin superfamily, member 4D 
HMCN1                 0.087   hemicentin 1 
NPHS1                 0.086   nephrin precursor 
CADM3                 0.086   cell adhesion molecule 3 isoform 2 
CADM3                 0.086   cell adhesion molecule 3 isoform 1 
LRIG3                 0.080   leucine-rich repeats and immunoglobulin-like domains...
LRIG3                 0.080   leucine-rich repeats and immunoglobulin-like domain...
MDGA2                 0.080   MAM domain containing 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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