VCAM1 9786

Name: VCAM1	Sequence: fasta or formatted (647aa)		NCBI GI: 18201909
Description: vascular cell adhesion molecule 1 isoform b precursor		Referenced in: Cardiovascular System Additional Immunoglobulin-related Receptors
Other entries for this name: alt prot [739aa] vascular cell adhesion molecule 1 isoform a precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.8 31 2 C cysteine 2.3 15 1 D aspartate 4.6 30 2 E glutamate 8.5 55 2 F phenylalanine 2.9 19 2 G glycine 6.2 40 2 H histidine 0.9 6 1 I isoleucine 7.1 46 2 K lysine 7.3 47 3 L leucine 9.9 64 2 M methionine 2.6 17 1 N asparagine 3.9 25 2 P proline 5.1 33 1 Q glutamine 3.6 23 1 R arginine 3.1 20 1 S serine 9.4 61 2 T threonine 7.3 47 2 V valine 7.4 48 2 W tryptophan 0.8 5 1 Y tyrosine 2.3 15 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 vascular cell adhesion molecule 1 isoform b precurso... VCAM1 0.543 vascular cell adhesion molecule 1 isoform a precursor... HMCN1 0.072 hemicentin 1 HMCN2 0.065 PREDICTED: hemicentin 2 LOC100292387 0.065 PREDICTED: similar to hemicentin 2 HMCN2 0.065 PREDICTED: hemicentin 2 HMCN2 0.065 PREDICTED: hemicentin 2 MDGA2 0.057 MAM domain containing 1 isoform 1 MXRA5 0.056 adlican TTN 0.054 titin isoform N2-A PXDN 0.054 peroxidasin PXDNL 0.052 peroxidasin homolog-like CNTN1 0.050 contactin 1 isoform 1 precursor CNTN1 0.050 contactin 1 isoform 2 precursor MDGA2 0.050 MAM domain containing 1 isoform 2 ROBO1 0.050 roundabout 1 isoform d ROBO1 0.050 roundabout 1 isoform c LOC642132 0.050 PREDICTED: similar to roundabout 1 isoform 1 LOC642132 0.050 PREDICTED: similar to roundabout 1 isoform 2 IGSF10 0.050 immunoglobulin superfamily, member 10 MAG 0.049 myelin associated glycoprotein isoform a precursor [... MAG 0.049 myelin associated glycoprotein isoform b precursor [... ROBO1 0.047 roundabout 1 isoform b HSPG2 0.047 heparan sulfate proteoglycan 2 ROBO1 0.047 roundabout 1 isoform a NCAM1 0.047 neural cell adhesion molecule 1 isoform 1 NCAM1 0.047 neural cell adhesion molecule 1 isoform 3 ICAM5 0.047 intercellular adhesion molecule 5 precursor CNTN2 0.046 contactin 2 precursor NCAM2 0.046 neural cell adhesion molecule 2 precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.