Guide to the Human Genome
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Name: LOC100292387 Sequence: fasta or formatted (1215aa) NCBI GI: 239755187
Description:

PREDICTED: similar to hemicentin 2

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4        102           2
 C cysteine            1.9         23           1
 D aspartate           3.2         39           1
 E glutamate           5.5         67           3
 F phenylalanine       1.6         20           2
 G glycine             9.0        109           2
 H histidine           3.5         42           2
 I isoleucine          3.2         39           2
 K lysine              2.7         33           2
 L leucine            10.0        121           2
 M methionine          0.6          7           1
 N asparagine          2.4         29           1
 P proline             9.5        116           3
 Q glutamine           4.5         55           2
 R arginine            6.5         79           2
 S serine              9.2        112           3
 T threonine           6.0         73           2
 V valine              8.8        107           2
 W tryptophan          1.4         17           1
 Y tyrosine            2.1         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hemicentin 2 
HMCN2                 0.794   PREDICTED: hemicentin 2 
LOC100289200          0.535   PREDICTED: hypothetical protein XP_002342997 
HMCN1                 0.377   hemicentin 1 
HMCN2                 0.122   PREDICTED: hemicentin 2 
HMCN2                 0.122   PREDICTED: hemicentin 2 
HSPG2                 0.099   heparan sulfate proteoglycan 2 
IGSF10                0.090   immunoglobulin superfamily, member 10 
MXRA5                 0.090   adlican 
TTN                   0.083   titin isoform N2-A 
DSCAML1               0.078   Down syndrome cell adhesion molecule like 1 
DSCAM                 0.076   Down syndrome cell adhesion molecule isoform CHD2-42...
PXDN                  0.070   peroxidasin 
ROBO1                 0.067   roundabout 1 isoform a 
ROBO1                 0.066   roundabout 1 isoform b 
ROBO3                 0.066   roundabout, axon guidance receptor, homolog 3 
ROBO1                 0.064   roundabout 1 isoform d 
ROBO1                 0.064   roundabout 1 isoform c 
LOC642132             0.064   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.064   PREDICTED: similar to roundabout 1 isoform 2 
ROBO2                 0.064   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.064   roundabout, axon guidance receptor, homolog 2 isofor...
SDK2                  0.063   sidekick 2 
PTK7                  0.061   PTK7 protein tyrosine kinase 7 isoform a precursor [...
PXDNL                 0.061   peroxidasin homolog-like 
SDK1                  0.058   sidekick 1 
CNTN4                 0.057   contactin 4 isoform a precursor 
NFASC                 0.055   neurofascin isoform 3 precursor 
NFASC                 0.055   neurofascin isoform 4 precursor 
OBSCN                 0.053   obscurin, cytoskeletal calmodulin and titin-interact...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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