Guide to the Human Genome
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Name: NTM Sequence: fasta or formatted (355aa) NCBI GI: 221316757
Description:

neurotrimin isoform 3

Referenced in:

Neurons
Additional Genes in Development

Other entries for this name:
alt prot [344aa] neurotrimin isoform 2
alt prot [316aa] neurotrimin isoform 4
alt prot [344aa] neurotrimin isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         19           2
 C cysteine            2.8         10           1
 D aspartate           4.2         15           2
 E glutamate           5.4         19           1
 F phenylalanine       2.8         10           2
 G glycine             6.8         24           1
 H histidine           1.7          6           1
 I isoleucine          5.1         18           1
 K lysine              5.4         19           2
 L leucine             8.7         31           3
 M methionine          0.8          3           1
 N asparagine          5.1         18           2
 P proline             5.6         20           2
 Q glutamine           3.1         11           1
 R arginine            5.1         18           2
 S serine              7.9         28           2
 T threonine           7.3         26           2
 V valine             11.5         41           3
 W tryptophan          2.0          7           1
 Y tyrosine            3.4         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neurotrimin isoform 3 
NTM                   0.954   neurotrimin isoform 1 
NTM                   0.874   neurotrimin isoform 2 
NTM                   0.873   neurotrimin isoform 4 
OPCML                 0.735   opioid binding protein/cell adhesion molecule-like is...
OPCML                 0.658   opioid binding protein/cell adhesion molecule-like i...
LSAMP                 0.488   limbic system-associated membrane protein 
NEGR1                 0.419   neuronal growth regulator 1 
IGLON5                0.378   IgLON family member 5 
LOC100292387          0.114   PREDICTED: similar to hemicentin 2 
HMCN2                 0.114   PREDICTED: hemicentin 2 
LOC100289200          0.114   PREDICTED: hypothetical protein XP_002342997 
NCAM1                 0.113   neural cell adhesion molecule 1 isoform 1 
NCAM1                 0.113   neural cell adhesion molecule 1 isoform 3 
IGSF9B                0.113   immunoglobulin superfamily, member 9B 
HMCN1                 0.112   hemicentin 1 
NCAM1                 0.107   neural cell adhesion molecule 1 isoform 2 
TTN                   0.103   titin isoform N2-A 
PXDN                  0.103   peroxidasin 
CNTN2                 0.094   contactin 2 precursor 
MDGA1                 0.094   MAM domain containing glycosylphosphatidylinositol a...
CADM2                 0.092   immunoglobulin superfamily, member 4D 
CNTN1                 0.092   contactin 1 isoform 1 precursor 
CNTN1                 0.092   contactin 1 isoform 2 precursor 
LRIG2                 0.089   leucine-rich repeats and immunoglobulin-like domains ...
HMCN2                 0.087   PREDICTED: hemicentin 2 
HMCN2                 0.087   PREDICTED: hemicentin 2 
MDGA2                 0.086   MAM domain containing 1 isoform 1 
DSCAM                 0.084   Down syndrome cell adhesion molecule isoform CHD2-42...
CNTN6                 0.084   contactin 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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