Guide to the Human Genome
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Name: CADM3 Sequence: fasta or formatted (432aa) NCBI GI: 11056046
Description:

cell adhesion molecule 3 isoform 1

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [398aa] cell adhesion molecule 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         31           2
 C cysteine            1.9          8           2
 D aspartate           5.8         25           2
 E glutamate           5.6         24           1
 F phenylalanine       2.5         11           1
 G glycine             7.6         33           2
 H histidine           2.3         10           1
 I isoleucine          5.3         23           2
 K lysine              4.6         20           2
 L leucine            10.0         43           7
 M methionine          1.6          7           1
 N asparagine          3.0         13           1
 P proline             6.2         27           2
 Q glutamine           4.9         21           2
 R arginine            3.5         15           1
 S serine             10.2         44           4
 T threonine           7.6         33           1
 V valine              5.3         23           2
 W tryptophan          1.6          7           1
 Y tyrosine            3.2         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cell adhesion molecule 3 isoform 1 
CADM3                 0.899   cell adhesion molecule 3 isoform 2 
CADM2                 0.425   immunoglobulin superfamily, member 4D 
CADM1                 0.293   immunoglobulin superfamily, member 4D isoform 2 [Ho...
CADM1                 0.289   immunoglobulin superfamily, member 4D isoform 1 [Ho...
CADM4                 0.237   cell adhesion molecule 4 
CRTAM                 0.082   class-I MHC-restricted T cell associated molecule [H...
PVR                   0.081   poliovirus receptor isoform delta 
PVR                   0.081   poliovirus receptor isoform alpha 
KIRREL3               0.081   kin of IRRE like 3 isoform 2 
KIRREL3               0.081   kin of IRRE like 3 isoform 1 
PVR                   0.071   poliovirus receptor isoform beta 
KIRREL                0.069   kin of IRRE like 
PVRL2                 0.068   poliovirus receptor related 2 isoform delta precurs...
PVRL1                 0.067   poliovirus receptor-related 1 isoform 2 
IGLON5                0.066   IgLON family member 5 
PVR                   0.066   poliovirus receptor isoform gamma 
PVRL4                 0.065   poliovirus receptor-related 4 
PVRL3                 0.065   poliovirus receptor-related 3 
PVRL1                 0.065   poliovirus receptor-related 1 isoform 1 
NEGR1                 0.062   neuronal growth regulator 1 
PVRL2                 0.061   poliovirus receptor related 2 isoform alpha precursor...
ALCAM                 0.059   activated leukocyte cell adhesion molecule 
CEACAM5               0.058   carcinoembryonic antigen-related cell adhesion molec...
LSAMP                 0.056   limbic system-associated membrane protein 
TTN                   0.056   titin isoform N2-A 
OPCML                 0.055   opioid binding protein/cell adhesion molecule-like i...
OPCML                 0.055   opioid binding protein/cell adhesion molecule-like is...
KIRREL2               0.055   kin of IRRE-like 2 isoform c 
KIRREL2               0.055   kin of IRRE-like 2 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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