Guide to the Human Genome
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Name: NEO1 Sequence: fasta or formatted (1461aa) NCBI GI: 157311649
Description:

neogenin homolog 1

Referenced in:

Fibronectin Family
Netrins and Laminins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         93           4
 C cysteine            0.9         13           2
 D aspartate           5.1         75           2
 E glutamate           5.5         80           2
 F phenylalanine       2.1         30           1
 G glycine             6.0         87           2
 H histidine           2.9         42           3
 I isoleucine          5.3         78           2
 K lysine              4.7         68           3
 L leucine             7.3        107           4
 M methionine          2.2         32           3
 N asparagine          4.4         64           2
 P proline             8.9        130           3
 Q glutamine           3.6         52           2
 R arginine            4.5         66           2
 S serine             10.1        148           3
 T threonine           7.7        113           2
 V valine              7.9        115           4
 W tryptophan          1.2         17           1
 Y tyrosine            3.5         51           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neogenin homolog 1 
DCC                   0.477   deleted in colorectal carcinoma 
PRTG                  0.089   protogenin 
PTPRD                 0.084   protein tyrosine phosphatase, receptor type, D isofo...
IGDCC4                0.084   immunoglobulin superfamily, DCC subclass, member 4 [...
PTPRS                 0.083   protein tyrosine phosphatase, receptor type, sigma ...
PTPRD                 0.082   protein tyrosine phosphatase, receptor type, D isofor...
PTPRS                 0.080   protein tyrosine phosphatase, receptor type, sigma ...
PTPRD                 0.078   protein tyrosine phosphatase, receptor type, D isofo...
PTPRF                 0.076   protein tyrosine phosphatase, receptor type, F isof...
DSCAM                 0.076   Down syndrome cell adhesion molecule isoform CHD2-42...
PTPRF                 0.075   protein tyrosine phosphatase, receptor type, F isof...
DSCAML1               0.075   Down syndrome cell adhesion molecule like 1 
SDK2                  0.074   sidekick 2 
IGDCC3                0.074   putative neuronal cell adhesion molecule 
ROBO2                 0.072   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.072   roundabout, axon guidance receptor, homolog 2 isofor...
SDK1                  0.070   sidekick 1 
L1CAM                 0.070   L1 cell adhesion molecule isoform 3 precursor [Homo...
L1CAM                 0.070   L1 cell adhesion molecule isoform 2 precursor 
L1CAM                 0.070   L1 cell adhesion molecule isoform 1 precursor 
NRCAM                 0.070   neuronal cell adhesion molecule isoform A precursor ...
CNTN4                 0.069   contactin 4 isoform a precursor 
NRCAM                 0.069   neuronal cell adhesion molecule isoform B precursor ...
ROBO1                 0.068   roundabout 1 isoform b 
ROBO1                 0.068   roundabout 1 isoform a 
CNTN3                 0.067   contactin 3 
ROBO1                 0.066   roundabout 1 isoform d 
ROBO1                 0.066   roundabout 1 isoform c 
LOC642132             0.066   PREDICTED: similar to roundabout 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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