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Search of human proteins with 50233789
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50233789 cancer/testis antigen 2 isoform LAGE-1a [Homo
sapiens]
(180 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50233789 cancer/testis antigen 2 isoform LAGE-1a [Homo sapiens] 370 e-103
gi|4503119 cancer/testis antigen 1B [Homo sapiens] 318 2e-87
gi|21281685 cancer/testis antigen 1A [Homo sapiens] 318 2e-87
gi|10337609 cancer/testis antigen 2 isoform LAGE-1b [Homo sapiens] 282 1e-76
gi|239757949 PREDICTED: similar to CTL-recognized antigen on mel... 94 6e-20
gi|24430137 L antigen family, member 3 [Homo sapiens] 73 1e-13
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 60 8e-10
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 57 9e-09
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 55 4e-08
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 55 4e-08
gi|48762934 alpha 2 type I collagen [Homo sapiens] 54 6e-08
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 52 2e-07
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 52 3e-07
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 52 3e-07
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 52 3e-07
gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens] 51 5e-07
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 50 8e-07
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 50 8e-07
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 50 1e-06
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 50 1e-06
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 49 2e-06
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 49 2e-06
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s... 48 4e-06
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s... 48 4e-06
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ... 48 4e-06
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 48 5e-06
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 48 5e-06
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 47 7e-06
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 47 7e-06
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 47 9e-06
>gi|50233789 cancer/testis antigen 2 isoform LAGE-1a [Homo sapiens]
Length = 180
Score = 370 bits (951), Expect = e-103
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MQAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 60
MQAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA
Sbjct: 1 MQAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 60
Query: 61 PRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG 120
PRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG
Sbjct: 61 PRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG 120
Query: 121 AVLKDFTVSGNLLFIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR 180
AVLKDFTVSGNLLFIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR
Sbjct: 121 AVLKDFTVSGNLLFIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR 180
>gi|4503119 cancer/testis antigen 1B [Homo sapiens]
Length = 180
Score = 318 bits (814), Expect = 2e-87
Identities = 152/180 (84%), Positives = 165/180 (91%)
Query: 1 MQAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 60
MQAEG+GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGP GGA
Sbjct: 1 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
Query: 61 PRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG 120
PRGPHGGAAS +G C CGAR P+SRLL+ ++ MPF++PMEAEL RR L++DA PLP PG
Sbjct: 61 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG 120
Query: 121 AVLKDFTVSGNLLFIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR 180
+LK+FTVSGN+L IRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQ PSGQRR
Sbjct: 121 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR 180
>gi|21281685 cancer/testis antigen 1A [Homo sapiens]
Length = 180
Score = 318 bits (814), Expect = 2e-87
Identities = 152/180 (84%), Positives = 165/180 (91%)
Query: 1 MQAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 60
MQAEG+GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGP GGA
Sbjct: 1 MQAEGRGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGA 60
Query: 61 PRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG 120
PRGPHGGAAS +G C CGAR P+SRLL+ ++ MPF++PMEAEL RR L++DA PLP PG
Sbjct: 61 PRGPHGGAASGLNGCCRCGARGPESRLLEFYLAMPFATPMEAELARRSLAQDAPPLPVPG 120
Query: 121 AVLKDFTVSGNLLFIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR 180
+LK+FTVSGN+L IRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQ PSGQRR
Sbjct: 121 VLLKEFTVSGNILTIRLTAADHRQLQLSISSCLQQLSLLMWITQCFLPVFLAQPPSGQRR 180
>gi|10337609 cancer/testis antigen 2 isoform LAGE-1b [Homo sapiens]
Length = 210
Score = 282 bits (721), Expect = 1e-76
Identities = 135/141 (95%), Positives = 137/141 (97%)
Query: 1 MQAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 60
MQAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA
Sbjct: 1 MQAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 60
Query: 61 PRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG 120
PRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG
Sbjct: 61 PRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPG 120
Query: 121 AVLKDFTVSGNLLFIRLTAAD 141
AVLKDFTVSGNLLF+ + D
Sbjct: 121 AVLKDFTVSGNLLFMSVRDQD 141
>gi|239757949 PREDICTED: similar to CTL-recognized antigen on
melanoma (CAMEL) [Homo sapiens]
Length = 154
Score = 94.0 bits (232), Expect = 6e-20
Identities = 70/155 (45%), Positives = 72/155 (46%), Gaps = 45/155 (29%)
Query: 38 GATGGRGPRGAGAARASGPRG------------GAPRGPHGGAASAQDGRCPCGARRPDS 85
GA G +GPRG R PRG GAP GP G A+ C
Sbjct: 33 GAQGQQGPRG----REEAPRGVRMAVPLLRRMEGAPAGPGGRTAACFSCILFCSVLG--- 85
Query: 86 RLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPGAVLKDFTVSGNLLFIRLTAADHRQL 145
S E VRR G RLTAADHRQL
Sbjct: 86 -----------GSGGEVGAVRRRQQGQEV---------------GGRARSRLTAADHRQL 119
Query: 146 QLSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR 180
QLSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR
Sbjct: 120 QLSISSCLQQLSLLMWITQCFLPVFLAQAPSGQRR 154
>gi|24430137 L antigen family, member 3 [Homo sapiens]
Length = 143
Score = 73.2 bits (178), Expect = 1e-13
Identities = 60/148 (40%), Positives = 75/148 (50%), Gaps = 19/148 (12%)
Query: 25 DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPR----GPHGGAASAQDGRCPCGA 80
D GG GG G GG RG G A+ P GGAP GP AASA G
Sbjct: 7 DAGGGADGGDGR----GGHSCRG-GVDTAAAPAGGAPPAHAPGPGRDAASAARG----SR 57
Query: 81 RRPDSRLLQLHITMPFSSPMEAELVRRILSRDAAPLPRPGAVLKDFTVSGNLLFIRLTAA 140
RP L ++PF +P+EAE+ L+ DA P R V KD TVSG +L +R A
Sbjct: 58 MRPHIFTL----SVPFPTPLEAEIAHGSLAPDAEPHQR--VVGKDLTVSGRILVVRWKAE 111
Query: 141 DHRQLQLSISSCLQQLSLLMWITQCFLP 168
D R L++S+ + L QLSL++ Q F P
Sbjct: 112 DCRLLRISVINFLDQLSLVVRTMQRFGP 139
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 60.5 bits (145), Expect = 8e-10
Identities = 42/95 (44%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 3 AEGQ-GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASG 55
A+G+ G G+ GDA GP GP P GP GN G PG GA G GP GA GAA G
Sbjct: 825 AKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVG 884
Query: 56 PRG----GAPRGPHGGAASAQDGRCPCGARRPDSR 86
P G P GP G A + G+ P G P R
Sbjct: 885 PPGPSGNAGPPGP-PGPAGKEGGKGPRGETGPAGR 918
Score = 50.4 bits (119), Expect = 8e-07
Identities = 31/74 (41%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRG-AGAARASGPRGG 59
+G G TG A PG PG P PG G +G GE G G GP G GA +GP+G
Sbjct: 1033 KGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQG- 1091
Query: 60 APRGPHGGAASAQD 73
PRG G D
Sbjct: 1092 -PRGDKGETGEQGD 1104
Score = 49.7 bits (117), Expect = 1e-06
Identities = 40/91 (43%), Positives = 43/91 (47%), Gaps = 17/91 (18%)
Query: 7 GTGGSTGDADGPGGP-GIPDGPGGNA--------GGPGEAGATGGRGPRGA----GAARA 53
G G+ GDA GP GP G P PG N G PGE G G GP GA GA A
Sbjct: 272 GLDGAKGDA-GPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGA 330
Query: 54 SGPRG-GAPRGPHG--GAASAQDGRCPCGAR 81
+GP G P GP G GA A+ P G R
Sbjct: 331 AGPPGPTGPAGPPGFPGAVGAKGEAGPQGPR 361
Score = 49.7 bits (117), Expect = 1e-06
Identities = 39/90 (43%), Positives = 41/90 (45%), Gaps = 20/90 (22%)
Query: 7 GTGGSTGDADGPGGPGIPD--------GPGGNAGGPGE---AGATGGRGPRG----AGAA 51
G G+ G A PG G P GP GNAG PG AG GG+GPRG AG
Sbjct: 860 GAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRP 919
Query: 52 RASGPRGGAPRGPHGGAAS-AQDGRCPCGA 80
GP G P GP G S DG P GA
Sbjct: 920 GEVGPPG--PPGPAGEKGSPGADG--PAGA 945
Score = 48.5 bits (114), Expect = 3e-06
Identities = 32/77 (41%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------GNAGGPGEAGATGGRGPRGA-GAARASGPR 57
G G+ GDA PG PG PG G AG PG G G GP+GA G+ G R
Sbjct: 704 GNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVR 763
Query: 58 G-GAPRGPHGGAASAQD 73
G P GP G A + D
Sbjct: 764 GLTGPIGPPGPAGAPGD 780
Score = 47.8 bits (112), Expect = 5e-06
Identities = 31/71 (43%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GA 60
A +G G+TG A PG P GP G G PG GA G GP+G G+ G RG
Sbjct: 319 AGARGNDGATGAAGPPG----PTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPG 374
Query: 61 PRGPHGGAASA 71
P GP G A A
Sbjct: 375 PPGPAGAAGPA 385
Score = 46.2 bits (108), Expect = 2e-05
Identities = 28/65 (43%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAP 61
A G G+ G + GP GPG P GP GN+G PG G+ G G +G G GP G P
Sbjct: 406 AGAPGFPGARGPS-GPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPG--P 462
Query: 62 RGPHG 66
G G
Sbjct: 463 AGEEG 467
Score = 46.2 bits (108), Expect = 2e-05
Identities = 36/85 (42%), Positives = 39/85 (45%), Gaps = 16/85 (18%)
Query: 7 GTGGSTGDADGPGGPGIP--------DGPGGNAGGPGEAGATGGRGPRG-AGAARASGPR 57
G G+ GD PG PG DG G G PG+AGA G GP G AG A GP
Sbjct: 794 GARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPI 853
Query: 58 G--GAPRGPHGGAASAQDGRCPCGA 80
G GAP GA A+ P GA
Sbjct: 854 GNVGAP-----GAKGARGSAGPPGA 873
Score = 46.2 bits (108), Expect = 2e-05
Identities = 39/98 (39%), Positives = 42/98 (42%), Gaps = 20/98 (20%)
Query: 5 GQGTGGSTGDADGPG--GPGIPDGPGGNAGGPGE---AGATGGRGPRGAGAARA----SG 55
G+G G TG A PG GP P GP G G PG AGA G GP+G R G
Sbjct: 906 GKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPG 965
Query: 56 PRG-----GAPRGPHG-----GAASAQDGRCPCGARRP 83
RG G P GP G G + A R P G P
Sbjct: 966 QRGERGFPGLP-GPSGEPGKQGPSGASGERGPPGPMGP 1002
Score = 45.8 bits (107), Expect = 2e-05
Identities = 30/70 (42%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 6 QGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG- 58
+G G G PG G+ P GP G AG PG+ G +G GP G GA A G RG
Sbjct: 745 RGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGE 804
Query: 59 GAPRGPHGGA 68
P GP G A
Sbjct: 805 PGPPGPAGFA 814
Score = 45.1 bits (105), Expect = 3e-05
Identities = 32/79 (40%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 7 GTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRGAGAARAS----GPRG-- 58
G G G A PG G+P GP G AG PGE G G G G AR G RG
Sbjct: 629 GERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQ 688
Query: 59 --GAPRGPHG-GAASAQDG 74
P GP G A DG
Sbjct: 689 GPPGPAGPRGANGAPGNDG 707
Score = 44.3 bits (103), Expect = 6e-05
Identities = 29/73 (39%), Positives = 31/73 (42%), Gaps = 12/73 (16%)
Query: 7 GTGGSTGDADGPGGPGIPD-----------GPGGNAGGPGEAGATGGRGPRGAGAARASG 55
G GS G+A PG G+P GP G G PG AG G GP G AR
Sbjct: 518 GPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQA 577
Query: 56 PRGGAPRGPHGGA 68
G P GP G A
Sbjct: 578 GVMGFP-GPKGAA 589
Score = 43.9 bits (102), Expect = 7e-05
Identities = 31/81 (38%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG-AGAARASGPRGG---- 59
G G+ G+ G G+P PG G AG GEAGA G GP G AG GP G
Sbjct: 584 GPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQ 643
Query: 60 ---APRGPHGGAASAQDGRCP 77
P GP G A + P
Sbjct: 644 GLPGPAGPPGEAGKPGEQGVP 664
Score = 43.5 bits (101), Expect = 1e-04
Identities = 30/75 (40%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAG---ATGGRGPRGAGAARAS-GPRGGAPR 62
G G G PG G+P GP G GGPG G A G GP+G R S GP G P+
Sbjct: 464 GEEGKRGARGEPGPTGLP-GPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAG--PK 520
Query: 63 GPHGGAASAQDGRCP 77
G G A + P
Sbjct: 521 GSPGEAGRPGEAGLP 535
Score = 43.5 bits (101), Expect = 1e-04
Identities = 34/80 (42%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-GAPRGPH 65
G G G+ PG G P G G AG PGEAG G +G G+ + GP G P GP
Sbjct: 503 GPKGPAGERGSPGPAG-PKGSPGEAGRPGEAGLPGAKGL--TGSPGSPGPDGKTGPPGPA 559
Query: 66 GGAASAQDGR----CPCGAR 81
G QDGR P GAR
Sbjct: 560 G-----QDGRPGPPGPPGAR 574
Score = 43.5 bits (101), Expect = 1e-04
Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGPH 65
G G+ GD G GP P GP G G PG+ G G GP G AG A G G +G
Sbjct: 773 GPAGAPGDK-GESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGA--KGEP 829
Query: 66 GGAASAQDGRCP 77
G A + D P
Sbjct: 830 GDAGAKGDAGPP 841
Score = 43.5 bits (101), Expect = 1e-04
Identities = 31/71 (43%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 7 GTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPR 57
G G +G+A PG PG P G G AG PGE G G GP G G+ A GP
Sbjct: 884 GPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPA 943
Query: 58 G--GAPRGPHG 66
G G P GP G
Sbjct: 944 GAPGTP-GPQG 953
Score = 42.7 bits (99), Expect = 2e-04
Identities = 29/73 (39%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRG 58
QG GG G G PG P G G+ G GE G G +GP G GA GP G
Sbjct: 421 QGPGGPPGPKGNSGEPGAP-GSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTG 479
Query: 59 -GAPRGPHGGAAS 70
P G GG S
Sbjct: 480 LPGPPGERGGPGS 492
Score = 42.4 bits (98), Expect = 2e-04
Identities = 33/85 (38%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 6 QGTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEAGAT---GGRGPRGAGAARASGPRGGA 60
QG G G+ A GP GP P GP G G GEAG G RGP G AR G
Sbjct: 202 QGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGL 261
Query: 61 P--RGPHG--GAASAQDGRCPCGAR 81
P +G G G A+ P G +
Sbjct: 262 PGMKGHRGFSGLDGAKGDAGPAGPK 286
Score = 42.4 bits (98), Expect = 2e-04
Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G TG GP G GP G G G+AG G GP+GA G P P
Sbjct: 548 GPDGKTGPP-GPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGA 606
Query: 67 GAASAQDGRCPCGARRP 83
+ +DG GA+ P
Sbjct: 607 VGPAGKDGE--AGAQGP 621
Score = 42.4 bits (98), Expect = 2e-04
Identities = 35/93 (37%), Positives = 39/93 (41%), Gaps = 27/93 (29%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----------------- 47
G G TG A GP GP GP G G G+ G TG +G RG
Sbjct: 1064 GDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPP 1123
Query: 48 -----AGAARASGPRGGAPRGPHGGA-ASAQDG 74
G + ASGP G PRGP G A A +DG
Sbjct: 1124 GSPGEQGPSGASGPAG--PRGPPGSAGAPGKDG 1154
Score = 42.4 bits (98), Expect = 2e-04
Identities = 28/66 (42%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 7 GTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG----GA 60
G GS G+ G GP P GP G+AG PG+ G G GP G GPRG
Sbjct: 1121 GPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIG-----PPGPRGRTGDAG 1175
Query: 61 PRGPHG 66
P GP G
Sbjct: 1176 PVGPPG 1181
Score = 42.0 bits (97), Expect = 3e-04
Identities = 30/73 (41%), Positives = 31/73 (42%), Gaps = 16/73 (21%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------------AGAARA 53
G G G PG PG P G G G PGE GA+G GPRG AG
Sbjct: 182 GPSGPRGLPGPPGAPG-PQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGR 240
Query: 54 SGPRGGAPRGPHG 66
G RG P GP G
Sbjct: 241 PGERG--PPGPQG 251
Score = 42.0 bits (97), Expect = 3e-04
Identities = 33/78 (42%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-GAPRGPH 65
G GS G PG G G G AG PG GA G GP G A SG RG P GP
Sbjct: 1019 GAEGSPGRDGSPGAKG-DRGETGPAGPPGAPGAPGAPGP--VGPAGKSGDRGETGPAGPA 1075
Query: 66 GGAASAQDGRCPCGARRP 83
G P GAR P
Sbjct: 1076 GPVG-------PVGARGP 1086
Score = 41.6 bits (96), Expect = 4e-04
Identities = 29/62 (46%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGP 64
+ TGG + GP GP GP G G PG G G +GP G G ASGP G PRGP
Sbjct: 170 KSTGGIS--VPGPMGPS---GPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMG--PRGP 222
Query: 65 HG 66
G
Sbjct: 223 PG 224
Score = 41.2 bits (95), Expect = 5e-04
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 10/85 (11%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNA--------GGPGEAGATGGRGPRGAGAARASGPRG 58
G G+ G A PG G P G N G PG G +G +GP G + +
Sbjct: 377 GPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEP 436
Query: 59 GAPRGPHGGAASAQDGRCPCGARRP 83
GAP A + G P G + P
Sbjct: 437 GAPGSKGDTGAKGEPG--PVGVQGP 459
Score = 41.2 bits (95), Expect = 5e-04
Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRGGA----PRGPHGGA 68
GP GP +G GN G G+AGA G G +GA G G RG A P+G G A
Sbjct: 692 GPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDA 748
Score = 40.8 bits (94), Expect = 6e-04
Identities = 33/91 (36%), Positives = 35/91 (38%), Gaps = 16/91 (17%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRG-------AGAARAS 54
G G G PG G P PG GN G G AG G GP G GA +
Sbjct: 296 GAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEA 355
Query: 55 GPRGGAPRGPHG--GAASAQDGRCPCGARRP 83
GP+G PRG G G P GA P
Sbjct: 356 GPQG--PRGSEGPQGVRGEPGPPGPAGAAGP 384
Score = 40.8 bits (94), Expect = 6e-04
Identities = 31/92 (33%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 7 GTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
G G TG A PG PG P GP G+ G G G G GP GA +
Sbjct: 332 GPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGAD 391
Query: 59 GAP--RGPHG-----GAASAQDGRCPCGARRP 83
G P +G +G GA R P G + P
Sbjct: 392 GQPGAKGANGAPGIAGAPGFPGARGPSGPQGP 423
Score = 40.4 bits (93), Expect = 8e-04
Identities = 31/82 (37%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 7 GTGGSTGDADGPGGPGIP--------DGPGGNAGGPGEAGATGG---RGPRGA-GAARAS 54
G G G+A PG G+P G G G PGE G G GPRGA GA
Sbjct: 647 GPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGND 706
Query: 55 GPRG--GAPRGPHGGAASAQDG 74
G +G GAP P A G
Sbjct: 707 GAKGDAGAPGAPGSQGAPGLQG 728
Score = 40.0 bits (92), Expect = 0.001
Identities = 37/99 (37%), Positives = 40/99 (40%), Gaps = 21/99 (21%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------GNAGGPGEAGATGGRGPRGA-GAARASGPR 57
G G G+A PG PG PG G AG PG G G G GA G A +GP+
Sbjct: 227 GKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPK 286
Query: 58 G--------GAP--RGPHG--GAASAQDGRCPCGARRPD 84
G GAP GP G G P GAR D
Sbjct: 287 GEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGND 325
Score = 40.0 bits (92), Expect = 0.001
Identities = 32/95 (33%), Positives = 35/95 (36%), Gaps = 20/95 (21%)
Query: 7 GTGGSTGDA-----------DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA------- 48
G GS GD GP GP +G G G PG G G G RG
Sbjct: 437 GAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFP 496
Query: 49 GAARASGPRGGAPRGPHGGAASAQDGRCPCGARRP 83
GA +GP+G P G G A P A RP
Sbjct: 497 GADGVAGPKG--PAGERGSPGPAGPKGSPGEAGRP 529
Score = 39.7 bits (91), Expect = 0.001
Identities = 34/84 (40%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAP 61
QG G G A GP G GP G G PG+ G G GP G G A A G +G P
Sbjct: 727 QGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGP 786
Query: 62 RGPHG--GAASAQDGRCPCGARRP 83
GP G GA A R G P
Sbjct: 787 SGPAGPTGARGAPGDRGEPGPPGP 810
Score = 39.3 bits (90), Expect = 0.002
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G G+A G PG P GP G G G AG+ G +G G +GP G A +
Sbjct: 608 GPAGKDGEAGAQGPPG-PAGPAGERGEQGPAGSPGFQGLPG-----PAGPPGEAGKPGEQ 661
Query: 67 GAASAQDGRCPCGAR 81
G P GAR
Sbjct: 662 GVPGDLGAPGPSGAR 676
Score = 39.3 bits (90), Expect = 0.002
Identities = 33/73 (45%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 3 AEGQ-GTGGSTGDADGPGGPGIPDGPGGNAGGP------GEAGATGGRGPRG-AGAARAS 54
AEG G GS G A G G P GP G G P G AG +G RG G AG A
Sbjct: 1020 AEGSPGRDGSPG-AKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPV 1078
Query: 55 GPRGG-APRGPHG 66
GP G P GP G
Sbjct: 1079 GPVGARGPAGPQG 1091
Score = 38.9 bits (89), Expect = 0.002
Identities = 35/99 (35%), Positives = 40/99 (40%), Gaps = 23/99 (23%)
Query: 2 QAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA------------- 48
+A QG GS +GP G GP G AG G AG G G GA
Sbjct: 354 EAGPQGPRGS----EGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAP 409
Query: 49 ---GAARASGPRG-GAPRGPHG--GAASAQDGRCPCGAR 81
GA SGP+G G P GP G G A + GA+
Sbjct: 410 GFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAK 448
Score = 38.9 bits (89), Expect = 0.002
Identities = 31/83 (37%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP----- 61
G G G GP G GP G G PG AG G G GA A S R G+P
Sbjct: 977 GPSGEPGK-QGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGD 1035
Query: 62 ---RGPHG--GAASAQDGRCPCG 79
GP G GA A P G
Sbjct: 1036 RGETGPAGPPGAPGAPGAPGPVG 1058
Score = 38.1 bits (87), Expect = 0.004
Identities = 21/44 (47%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 4 EGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG 47
E G G GD GP GP P GP G G PG+ G G GP G
Sbjct: 106 ETTGVEGPKGDT-GPRGPRGPAGPPGRDGIPGQPGLPGPPGPPG 148
Score = 37.4 bits (85), Expect = 0.007
Identities = 29/84 (34%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G G+ PG PG PG G +G GE G G GP G R GAP G
Sbjct: 962 GLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAP-GA 1020
Query: 65 HG-----GAASAQDGRCPCGARRP 83
G G+ A+ R G P
Sbjct: 1021 EGSPGRDGSPGAKGDRGETGPAGP 1044
Score = 35.4 bits (80), Expect = 0.027
Identities = 37/113 (32%), Positives = 38/113 (33%), Gaps = 36/113 (31%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA---------- 53
+G G TG GP GP DG G G PG G G GP G G A
Sbjct: 111 EGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEK 170
Query: 54 -------------SGPRG-----GAPRGPHG-----GAASAQDGRCPCGARRP 83
SGPRG GAP GP G G P G R P
Sbjct: 171 STGGISVPGPMGPSGPRGLPGPPGAP-GPQGFQGPPGEPGEPGASGPMGPRGP 222
Score = 35.4 bits (80), Expect = 0.027
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
+G G G + G PG P PG G G +G G RGP G+ A G P GP
Sbjct: 1105 RGIKGHRGFSGLQGPPGPPGSPG-EQGPSGASGPAGPRGPPGSAGAPGKDGLNGLP-GPI 1162
Query: 66 G 66
G
Sbjct: 1163 G 1163
Score = 33.9 bits (76), Expect = 0.077
Identities = 24/59 (40%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 8 TGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
T T +GP G P GP G AG PG G G G G GP G P GP G
Sbjct: 103 TDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPG-----PPGPPG--PPGPPG 154
Score = 32.3 bits (72), Expect = 0.23
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 7 GTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARASG 55
G G G A PG G+ P GP G G G G G GP G ++G
Sbjct: 1139 GPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAG 1195
Score = 30.4 bits (67), Expect = 0.86
Identities = 18/51 (35%), Positives = 21/51 (41%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHGG 67
GP GP G G G PG G G GP AG + P+ + GG
Sbjct: 1163 GPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQPPQEKAHDGG 1213
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAA 51
A G G G GP GP P G G+AG G G G GP G +A
Sbjct: 1147 AGAPGKDGLNG-LPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSA 1194
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 57.0 bits (136), Expect = 9e-09
Identities = 39/81 (48%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPG---EAGATGGRGPRGAGAARASGPRGGA-PR 62
GTGG G+ PG PG P G G G PG +AGA G RGP G A A G RGGA P
Sbjct: 645 GTGGPPGENGKPGEPG-PKGDAGAPGAPGGKGDAGAPGERGP--PGLAGAPGLRGGAGPP 701
Query: 63 GPHGGAASAQDGRCPCGARRP 83
GP GG +A P A P
Sbjct: 702 GPEGGKGAAGPPGPPGAAGTP 722
Score = 48.9 bits (115), Expect = 2e-06
Identities = 32/80 (40%), Positives = 36/80 (45%), Gaps = 17/80 (21%)
Query: 7 GTGGSTGDADGPGGPGI--------------PDGPGGNAGGPGEAGATGGRGPRGA-GAA 51
G G G+ PG PGI P GP G G PG+ G GG+G RGA G
Sbjct: 774 GQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEK 833
Query: 52 RASGPRGGAPRGPHGGAASA 71
GP G A GP GG+ A
Sbjct: 834 GEGGPPGVA--GPPGGSGPA 851
Score = 48.9 bits (115), Expect = 2e-06
Identities = 33/86 (38%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 7 GTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GAP 61
G G +GD GP GP GP G+ G PG G G +G G GAA G RG G P
Sbjct: 1056 GPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNP 1115
Query: 62 RGPHGGAASAQDGRC----PCGARRP 83
P + Q G P G R P
Sbjct: 1116 GAPGSPGPAGQQGAIGSPGPAGPRGP 1141
Score = 48.5 bits (114), Expect = 3e-06
Identities = 35/77 (45%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GA- 60
G GG G GP GP P GP G +G PG G+ G +GP G G A SGP G GA
Sbjct: 163 GVAVGGLAG-YPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAI 221
Query: 61 -PRGPHG-GAASAQDGR 75
P GP G S + GR
Sbjct: 222 GPSGPAGKDGESGRPGR 238
Score = 48.5 bits (114), Expect = 3e-06
Identities = 33/87 (37%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG-------AGAARASGP 56
+G+ G G A PG G+P PG GN G PG +G+ G GP G G+ SGP
Sbjct: 863 RGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGP 922
Query: 57 RGGAPRGPHGGAASAQDGRCPCGARRP 83
+G A + G+ AQ P GA P
Sbjct: 923 KGDAGQPGEKGSPGAQG---PPGAPGP 946
Score = 48.1 bits (113), Expect = 4e-06
Identities = 33/87 (37%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG----AGAARASGPRGG 59
+G+ G G+ PG G P PG G GG GE GA G +G G AG SGP G
Sbjct: 794 RGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAG- 852
Query: 60 APRGPHGGAASAQDGRCPCGARRPDSR 86
P GP G P A P +R
Sbjct: 853 -PPGPQGVKGERGSPGGPGAAGFPGAR 878
Score = 48.1 bits (113), Expect = 4e-06
Identities = 29/68 (42%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 5 GQGTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG 58
G+G G G PG PG P GP G +G GE+G G G P AG+ A GP+G
Sbjct: 1030 GKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQG 1089
Query: 59 GAPRGPHG 66
PRG G
Sbjct: 1090 --PRGDKG 1095
Score = 47.8 bits (112), Expect = 5e-06
Identities = 40/99 (40%), Positives = 45/99 (45%), Gaps = 26/99 (26%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGN------------------AGGPGEAGATGGRGPRG 47
QG G G+ GP GP P GPGG+ G PGE G G GP+G
Sbjct: 605 QGPPGKNGET-GPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKG 663
Query: 48 -AGAARASGPRG--GAP--RGPHG--GAASAQDGRCPCG 79
AGA A G +G GAP RGP G GA + G P G
Sbjct: 664 DAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPG 702
Score = 46.2 bits (108), Expect = 2e-05
Identities = 31/72 (43%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GAPR 62
+G GG G A PGG G P GP G G GE G+ GG G G GA GP G G P
Sbjct: 833 KGEGGPPGVAGPPGGSG-PAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPG 891
Query: 63 GPHGGAASAQDG 74
P + +DG
Sbjct: 892 PPGPSGSPGKDG 903
Score = 45.8 bits (107), Expect = 2e-05
Identities = 34/81 (41%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAPR 62
G G+ G PG G P G G G G PG GA G GP G G A SG RG P
Sbjct: 1011 GRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPA 1070
Query: 63 GPHG--GAASAQDGRCPCGAR 81
GP G G A ++ P G R
Sbjct: 1071 GPAGAPGPAGSRGAPGPQGPR 1091
Score = 45.8 bits (107), Expect = 2e-05
Identities = 31/74 (41%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
QG GS G A GP GP P GP G G G G G GPRG R S G P P
Sbjct: 1127 QGAIGSPGPA-GPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPG 1185
Query: 66 GGAASAQDGRCPCG 79
G C CG
Sbjct: 1186 PPGPPGAPGPC-CG 1198
Score = 45.4 bits (106), Expect = 3e-05
Identities = 29/71 (40%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G G+ G G PG P G G GGPG G G GPRG +GP G P GP G
Sbjct: 723 GLQGMPGERGGLGSPG-PKGDKGEPGGPGADGVPGKDGPRG-----PTGPIG--PPGPAG 774
Query: 67 GAASAQDGRCP 77
+G P
Sbjct: 775 QPGDKGEGGAP 785
Score = 45.1 bits (105), Expect = 3e-05
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPR 62
GQG G GD PG PGIP G G+ G PG+ G+ G GP G + +GP+ +P+
Sbjct: 101 GQGPQGPKGD---PGPPGIP-GRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQ 154
Score = 45.1 bits (105), Expect = 3e-05
Identities = 34/69 (49%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 7 GTGGSTGDADGPGGP-GIPDGPGGN-----AGGPGEAGATGGRGPRG-AGAARASGPRGG 59
G G G A GP GP GI PGG AG PG G G RGP G AGA A G RGG
Sbjct: 372 GPQGHAG-AQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGG 430
Query: 60 APRGPHGGA 68
A GA
Sbjct: 431 AGEPGKNGA 439
Score = 45.1 bits (105), Expect = 3e-05
Identities = 36/105 (34%), Positives = 40/105 (38%), Gaps = 24/105 (22%)
Query: 3 AEGQGTGGSTGDADGPGG---PGIPDGPG--GNAGGPGEAGATGGRGPRG---------- 47
A G G GDA PG PG+ PG G AG PG G G GP G
Sbjct: 665 AGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGL 724
Query: 48 ------AGAARASGPRG--GAPRGPHGGAASAQDG-RCPCGARRP 83
G + GP+G G P GP +DG R P G P
Sbjct: 725 QGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGP 769
Score = 45.1 bits (105), Expect = 3e-05
Identities = 33/73 (45%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARAS-GPRG-GAPR 62
G G G G DGP GP P GP G AG PG+ G G G G R S G RG P
Sbjct: 748 GPGADGVPGK-DGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPP 806
Query: 63 GPHG-GAASAQDG 74
GP G A Q+G
Sbjct: 807 GPAGFPGAPGQNG 819
Score = 44.7 bits (104), Expect = 4e-05
Identities = 28/63 (44%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRGGAPRGPH 65
G G+ G G PG P GP G AG PG GA G GP G+ G+ A G RG H
Sbjct: 318 GARGNDGARGSDGQPG-PPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGH 376
Query: 66 GGA 68
GA
Sbjct: 377 AGA 379
Score = 43.1 bits (100), Expect = 1e-04
Identities = 32/82 (39%), Positives = 33/82 (40%), Gaps = 14/82 (17%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGA-------GAARASGPR 57
G GS G G GIP PG G G PG AGA G G RG GA GPR
Sbjct: 387 GINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPR 446
Query: 58 G-----GAPRGPHGGAASAQDG 74
G G P P +DG
Sbjct: 447 GERGEAGIPGVPGAKGEDGKDG 468
Score = 43.1 bits (100), Expect = 1e-04
Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G+ G+ PG G P GP G G G AG G GP G A R G P GP
Sbjct: 477 GLPGAAGERGAPGFRG-PAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGP 533
Score = 42.4 bits (98), Expect = 2e-04
Identities = 26/68 (38%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G G A G PG P GP G AG PG G GG G RG + G P P
Sbjct: 498 GIPGEKGPAGERGAPG-PAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGS 556
Query: 67 GAASAQDG 74
S + G
Sbjct: 557 QGESGRPG 564
Score = 42.4 bits (98), Expect = 2e-04
Identities = 31/81 (38%), Positives = 35/81 (43%), Gaps = 19/81 (23%)
Query: 6 QGTGGSTGDADGPGGPGI------PDGPG--GNAGGPGEAGATGGRGPRGAGAARAS--- 54
+G G G PGGPG+ P GPG G G PG G +G GP G R
Sbjct: 518 RGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGV 577
Query: 55 ----GPRG--GAP--RGPHGG 67
GP+G GAP G GG
Sbjct: 578 MGFPGPKGNDGAPGKNGERGG 598
Score = 42.4 bits (98), Expect = 2e-04
Identities = 29/78 (37%), Positives = 34/78 (43%), Gaps = 16/78 (20%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPG-----------GNAGGPGEAGATGGRGPRG-AGAAR 52
G G G G GPG G P PG G +G G+ G G GP+G GA
Sbjct: 532 GPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPG 591
Query: 53 ASGPRGG----APRGPHG 66
+G RGG P+GP G
Sbjct: 592 KNGERGGPGGPGPQGPPG 609
Score = 42.4 bits (98), Expect = 2e-04
Identities = 34/93 (36%), Positives = 37/93 (39%), Gaps = 20/93 (21%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAG--------GP-GEAGATGGRGPRGAGAARASGPR 57
G G G+ GPGGPG P GP G G GP G G G GP G +
Sbjct: 588 GAPGKNGERGGPGGPG-PQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGT 646
Query: 58 GGAP--------RGPHG--GAASAQDGRCPCGA 80
GG P GP G GA A G+ GA
Sbjct: 647 GGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGA 679
Score = 42.0 bits (97), Expect = 3e-04
Identities = 28/71 (39%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARAS-GPRGG 59
A +G G+ G PG PG P G G+ G GE G G G GA R GP+G
Sbjct: 317 AGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGH 376
Query: 60 A----PRGPHG 66
A P GP G
Sbjct: 377 AGAQGPPGPPG 387
Score = 42.0 bits (97), Expect = 3e-04
Identities = 28/69 (40%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 3 AEGQ-GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG 59
A+G+ G G G+A PG PG DG G+ G PG G G G RGA R G
Sbjct: 439 AKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNG 498
Query: 60 AP--RGPHG 66
P +GP G
Sbjct: 499 IPGEKGPAG 507
Score = 42.0 bits (97), Expect = 3e-04
Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 7 GTGGSTGDADGPGGPGIP-----------DGPGGNAGGPGEAGATGGRGPRGA-GAARAS 54
G G +G+ PG G+P DG G+ G PG G+ GG+G RG G+ A
Sbjct: 984 GANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAP 1043
Query: 55 G-PRGGAPRGPHGGAASAQD 73
G P P GP G A + D
Sbjct: 1044 GAPGHPGPPGPVGPAGKSGD 1063
Score = 40.8 bits (94), Expect = 6e-04
Identities = 28/71 (39%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAG------GPGEAGATGGRGPRG----AGAARASGP 56
G G G+ PG PG+ GP G+AG PG G G GP G GA +GP
Sbjct: 903 GPPGPAGNTGAPGSPGV-SGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGP 961
Query: 57 RG-GAPRGPHG 66
G PRG G
Sbjct: 962 PGMPGPRGSPG 972
Score = 40.8 bits (94), Expect = 6e-04
Identities = 27/70 (38%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGA-------GAARASGP 56
+G G G PG PG P PG G G G G G RGP G G + GP
Sbjct: 1100 RGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGP 1159
Query: 57 RGGAPRGPHG 66
G P GP G
Sbjct: 1160 IG--PPGPRG 1167
Score = 39.7 bits (91), Expect = 0.001
Identities = 30/73 (41%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 6 QGTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
QG G G A G PG P GP G AG GE+G G G RG G GP G P
Sbjct: 200 QGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGP-AGIPG 258
Query: 63 GPHGGAASAQDGR 75
P DGR
Sbjct: 259 FPGMKGHRGFDGR 271
Score = 39.7 bits (91), Expect = 0.001
Identities = 32/76 (42%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 3 AEGQ-GTGGSTGDADGPGGPGIPDGPGGNAGG------PGEAGATGGRGPRG-AGAARAS 54
A+G+ G GS G PG G P GP G+AG PG G+ GG+G G AG A
Sbjct: 349 AKGEVGPAGSPGSNGAPGQRGEP-GPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAP 407
Query: 55 GPRGGAPRGPHGGAAS 70
G G RGP G A +
Sbjct: 408 GLMGA--RGPPGPAGA 421
Score = 39.7 bits (91), Expect = 0.001
Identities = 26/54 (48%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 17 GPGGP-GIPD--GPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG--GAPRGP 64
GP GP GIP GP G G PG AG G G G G G RG G+P GP
Sbjct: 492 GPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGP 545
Score = 39.7 bits (91), Expect = 0.001
Identities = 29/79 (36%), Positives = 32/79 (40%), Gaps = 20/79 (25%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGA------------ 48
+G G G+ PG G P PG G G G AG G GPRG+
Sbjct: 923 KGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGK 982
Query: 49 -GAARASGPRGGAPRGPHG 66
GA SG RG P GP G
Sbjct: 983 PGANGLSGERG--PPGPQG 999
Score = 39.3 bits (90), Expect = 0.002
Identities = 26/69 (37%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
+G G G+ G PG+ G G PGE GA G GPRGA R G P P
Sbjct: 266 RGFDGRNGEKGETGAPGLK----GENGLPGENGAPGPMGPRGAPGER------GRPGLPG 315
Query: 66 GGAASAQDG 74
A DG
Sbjct: 316 AAGARGNDG 324
Score = 38.9 bits (89), Expect = 0.002
Identities = 28/65 (43%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATG---GRGPRGAGAARASGPRGGAPRG 63
G G G+ PG G P GP G G PGE G G G RG AR S + G P G
Sbjct: 279 GAPGLKGENGLPGENGAP-GPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPP-G 336
Query: 64 PHGGA 68
P G A
Sbjct: 337 PPGTA 341
Score = 38.9 bits (89), Expect = 0.002
Identities = 33/90 (36%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 3 AEGQ-GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGA----GAAR 52
++GQ G G G A PG PG P G G+ G PG+ G G +G GA G
Sbjct: 328 SDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPG 387
Query: 53 ASG-PRGGAPRGPHG--GAASAQDGRCPCG 79
+G P G GP G GA R P G
Sbjct: 388 INGSPGGKGEMGPAGIPGAPGLMGARGPPG 417
Score = 38.1 bits (87), Expect = 0.004
Identities = 32/92 (34%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-------GAARASGPRG 58
+G G G G PG P G G AG PG GA G G G+ G A+G RG
Sbjct: 428 RGGAGEPGKNGAKGEPG-PRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERG 486
Query: 59 G----APRGPHG-----GAASAQDGRCPCGAR 81
P GP+G G A + P G R
Sbjct: 487 APGFRGPAGPNGIPGEKGPAGERGAPGPAGPR 518
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG-AGAARASGPRGG-APR 62
G G+ G+ G PG P G G AG G G G GP G G +G RG P
Sbjct: 456 GVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPA 515
Query: 63 GPHGGAAS-AQDG 74
GP G A +DG
Sbjct: 516 GPRGAAGEPGRDG 528
Score = 37.0 bits (84), Expect = 0.009
Identities = 19/46 (41%), Positives = 22/46 (47%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAA 51
+G+ GS G PG PG P PG GG G A G G + G A
Sbjct: 1172 RGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAGGFA 1217
Score = 36.2 bits (82), Expect = 0.016
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 13/67 (19%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-------PRGAGAARASGPRGG 59
G G G A PG G+P GPG G G+ GG G P G + GP G
Sbjct: 513 GPAGPRGAAGEPGRDGVPGGPGMR----GMPGSPGGPGSDGKPGPPGSQGESGRPGPPG- 567
Query: 60 APRGPHG 66
P GP G
Sbjct: 568 -PSGPRG 573
Score = 36.2 bits (82), Expect = 0.016
Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRG-AGAARASGPRG-- 58
G G+ G A PG PG PG G +G PG G +G RGP G G +G G
Sbjct: 951 GITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEP 1010
Query: 59 GAPRGPHGGAASAQDG 74
G P +DG
Sbjct: 1011 GRDGNPGSDGLPGRDG 1026
Score = 35.8 bits (81), Expect = 0.020
Identities = 34/88 (38%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 7 GTGGSTGDADGPGGPGIP-----DGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG-- 58
G G+ G+ PG PG DG G+ G PG G G G P GA GP G
Sbjct: 300 GPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSP 359
Query: 59 ---GAP--RGPHG--GAASAQDGRCPCG 79
GAP RG G G A AQ P G
Sbjct: 360 GSNGAPGQRGEPGPQGHAGAQGPPGPPG 387
Score = 35.8 bits (81), Expect = 0.020
Identities = 27/80 (33%), Positives = 29/80 (36%), Gaps = 19/80 (23%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRG-------PRGAGAARASGP 56
+G G G A PG G PG G G GE G G G P GA + GP
Sbjct: 1064 RGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGP 1123
Query: 57 RG----------GAPRGPHG 66
G PRGP G
Sbjct: 1124 AGQQGAIGSPGPAGPRGPVG 1143
Score = 35.4 bits (80), Expect = 0.027
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G G A G PG+ G G G G PG G G G G A+ + G+P
Sbjct: 411 GARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSP 470
Query: 62 RGP-HGGAASAQDGRCPCGARRP 83
P G A R G R P
Sbjct: 471 GEPGANGLPGAAGERGAPGFRGP 493
Score = 35.0 bits (79), Expect = 0.035
Identities = 24/63 (38%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
GT G G GP GP G G+ G PG G G GP GA G A G G
Sbjct: 1152 GTSGHPGPI-GPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGG 1210
Query: 67 GAA 69
A
Sbjct: 1211 EKA 1213
Score = 35.0 bits (79), Expect = 0.035
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGE-AGATGGRGPRGAGAARASG 55
+G G G PG PG P GP G G PG G G G G +A G
Sbjct: 1166 RGNRGERGSEGSPGHPGQP-GPPGPPGAPGPCCGGVGAAAIAGIGGEKAGG 1215
Score = 33.9 bits (76), Expect = 0.077
Identities = 28/88 (31%), Positives = 32/88 (36%), Gaps = 29/88 (32%)
Query: 7 GTGGSTGDADGPGGPGIPDGP---------------------GGNAGGPGEAGATGGRGP 45
G GS G++ PG PG P GP G GGPG G G G
Sbjct: 552 GPPGSQGESGRPGPPG-PSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGK 610
Query: 46 RGAGAARASGPRGGAPRGPHGGAASAQD 73
G +GP+G P GP G D
Sbjct: 611 NG-----ETGPQG--PPGPTGPGGDKGD 631
Score = 33.1 bits (74), Expect = 0.13
Identities = 31/99 (31%), Positives = 34/99 (34%), Gaps = 20/99 (20%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPG---EAGATGGRGPRGA--------------- 48
G G G+ PG PGI GP G G PG G G G +G
Sbjct: 234 GRPGRPGERGLPGPPGIK-GPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGE 292
Query: 49 -GAARASGPRGGAPRGPHGGAASAQDGRCPCGARRPDSR 86
GA GPRG G A R GAR D +
Sbjct: 293 NGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQ 331
Score = 32.7 bits (73), Expect = 0.17
Identities = 26/67 (38%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG--GAPRGP 64
G G G G PG P GP G G GE G+ G G G GP G GAP
Sbjct: 1143 GPSGPPGKDGTSGHPG-PIGPPGPRGNRGERGSEGSPGHPG-----QPGPPGPPGAPGPC 1196
Query: 65 HGGAASA 71
GG +A
Sbjct: 1197 CGGVGAA 1203
Score = 28.5 bits (62), Expect = 3.3
Identities = 24/67 (35%), Positives = 24/67 (35%), Gaps = 10/67 (14%)
Query: 2 QAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGE---------AGATGGRGPRGAGAAR 52
QA G G G A GP GP DG G G PGE G G G G R
Sbjct: 208 QAGPSGPPGPPG-AIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHR 266
Query: 53 ASGPRGG 59
R G
Sbjct: 267 GFDGRNG 273
Score = 27.7 bits (60), Expect = 5.6
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 18 PGGPGIPDGPGGNAGGPGEAGATGGRG----PRGAGAARASGPRG---GAPRGP 64
P P GP G G PG G G G P G+ + GP G P GP
Sbjct: 95 PTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGP 148
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 54.7 bits (130), Expect = 4e-08
Identities = 34/74 (45%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAAR----ASGPRG--GA 60
G G+ G+ DG GP P GP G AGGPG GA G +G G AR A GPRG G
Sbjct: 339 GAAGARGN-DGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGT 397
Query: 61 PRGPHGGAASAQDG 74
P P AS G
Sbjct: 398 PGSPGPAGASGNPG 411
Score = 53.1 bits (126), Expect = 1e-07
Identities = 33/69 (47%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRG-AGAARASGPRGG 59
+G G TG PG PG P PG G G GEAGA G GP G AGA GP+G
Sbjct: 1055 KGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQG- 1113
Query: 60 APRGPHGGA 68
PRG G A
Sbjct: 1114 -PRGDKGEA 1121
Score = 52.0 bits (123), Expect = 3e-07
Identities = 38/84 (45%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPRG- 58
QG G GDA PG GP GP G G G GA G +GP GA GAA GP G
Sbjct: 851 QGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGS 910
Query: 59 -GAPRGPHGGAASAQDGRCPCGAR 81
G P P S +DG P GAR
Sbjct: 911 NGNPGPPGPPGPSGKDG--PKGAR 932
Score = 49.7 bits (117), Expect = 1e-06
Identities = 39/91 (42%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG-----G 59
QG G++GD GP GP P G G AG PG G+ G GP G GAA G RG G
Sbjct: 1007 QGAPGASGDR-GPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVG 1065
Query: 60 AP--RGPHG-----GAASAQDGRCPCGARRP 83
AP GP G G Q R GA+ P
Sbjct: 1066 APGAPGPPGSPGPAGPTGKQGDRGEAGAQGP 1096
Score = 48.5 bits (114), Expect = 3e-06
Identities = 38/92 (41%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 3 AEGQ-GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPR 57
A+G+ G G G++ PG G P GP G G PGE G TG G GA G +GP
Sbjct: 298 AKGEAGAPGVKGESGSPGENGSP-GPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPP 356
Query: 58 GGAPRGPHG-----GAASAQDGRCPCGARRPD 84
G P GP G GA A+ P GAR P+
Sbjct: 357 G--PVGPAGGPGFPGAPGAKGEAGPTGARGPE 386
Score = 48.1 bits (113), Expect = 4e-06
Identities = 30/67 (44%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 7 GTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGG---RGPRG-AGAARASGPRGGA 60
G GG GD PG G P GP G G PGE G+ G +GPRG G GP+G +
Sbjct: 675 GEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGAS 734
Query: 61 -PRGPHG 66
P GP G
Sbjct: 735 GPAGPPG 741
Score = 47.4 bits (111), Expect = 7e-06
Identities = 36/87 (41%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 2 QAEGQGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRG----------PRGAG 49
+A QG G +G A G GP P G G AG PGE G G RG P +G
Sbjct: 1090 EAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSG 1149
Query: 50 AARASGPRG-GAPRGPHGGAA-SAQDG 74
ASGP G PRGP G S +DG
Sbjct: 1150 DQGASGPAGPSGPRGPPGPVGPSGKDG 1176
Score = 47.0 bits (110), Expect = 9e-06
Identities = 39/94 (41%), Positives = 43/94 (45%), Gaps = 20/94 (21%)
Query: 6 QGTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRG----------AGAARA 53
QG G +G PG PG P G G+ G PGEAGA G GPRG GA
Sbjct: 656 QGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGL 715
Query: 54 SGPRG--GAP--RGPHGGAASAQDGRCPCGARRP 83
GPRG G P GP G + A P GA+ P
Sbjct: 716 QGPRGLPGTPGTDGPKGASGPAG----PPGAQGP 745
Score = 45.4 bits (106), Expect = 3e-05
Identities = 31/62 (50%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGPH 65
GT G G A GP GP GP G G PGE GA G GP+G G GP GAP G
Sbjct: 726 GTDGPKG-ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPE-GAP-GKD 782
Query: 66 GG 67
GG
Sbjct: 783 GG 784
Score = 45.4 bits (106), Expect = 3e-05
Identities = 33/82 (40%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-A 60
A +G G G+ GP GP GP G G PG G G G +G AGA GP G
Sbjct: 815 AGARGAPGERGET-GPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 873
Query: 61 PRGPHG--GAASAQDGRCPCGA 80
P+GP G G A+ + P GA
Sbjct: 874 PQGPTGVTGPKGARGAQGPPGA 895
Score = 45.1 bits (105), Expect = 3e-05
Identities = 34/88 (38%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 5 GQGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP- 61
G G G G+ PG G P DG G G PGE G +G GP+GA G P
Sbjct: 499 GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPG 558
Query: 62 -RGPHG--GAASAQDGRCPCGARRPDSR 86
RG G G A Q P GA D R
Sbjct: 559 ARGLTGRPGDAGPQGKVGPSGAPGEDGR 586
Score = 44.7 bits (104), Expect = 4e-05
Identities = 28/63 (44%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-APRG 63
QG G G + GP GP P GP G G G G G GPRG +G +GP G P G
Sbjct: 1151 QGASGPAGPS-GPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPG 1209
Query: 64 PHG 66
P G
Sbjct: 1210 PPG 1212
Score = 44.3 bits (103), Expect = 6e-05
Identities = 27/59 (45%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 9 GGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRGGAPRGPHG 66
G G GP GP P GP G AG PG G G G P G + GPRG P GP G
Sbjct: 193 GAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRG--PPGPPG 249
Score = 44.3 bits (103), Expect = 6e-05
Identities = 32/73 (43%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 6 QGTGGSTG-----DADGPGG-PGIP--DGPGGNAGGPGEAGATGGRGPRG----AGAARA 53
+G G TG A GP G PG P GP G +G PG G G +G G AGA
Sbjct: 374 KGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGF 433
Query: 54 SGPRGGAPRGPHG 66
GPRG P GP G
Sbjct: 434 PGPRG--PPGPQG 444
Score = 44.3 bits (103), Expect = 6e-05
Identities = 32/83 (38%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGA-----ARASGPRGGA 60
QG G+TG G G P G GN G PG G +G GP+GA RA P
Sbjct: 890 QGPPGATGFPGAAGRVG-PPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQG 948
Query: 61 PRGPHGGAASAQDGRCPCGARRP 83
P GP G D P GA P
Sbjct: 949 PAGPPGEKGEPGDDG-PSGAEGP 970
Score = 43.5 bits (101), Expect = 1e-04
Identities = 29/63 (46%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 7 GTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA-SGPRGGAPRG 63
G G +GD A GP GP P GP G G G+ GA G GP G R SG G P G
Sbjct: 1143 GPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETG--PAG 1200
Query: 64 PHG 66
P G
Sbjct: 1201 PPG 1203
Score = 43.1 bits (100), Expect = 1e-04
Identities = 31/66 (46%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAPR 62
G G G GG G+ P GP G AG GE G G GP G AGA A G RG P
Sbjct: 771 GEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPP 830
Query: 63 GPHGGA 68
GP G A
Sbjct: 831 GPAGFA 836
Score = 43.1 bits (100), Expect = 1e-04
Identities = 34/85 (40%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-----G 59
+G G G G PG+P GP G G G GA+G RGP G G +GP G G
Sbjct: 980 RGIVGLPGQRGERGFPGLP-GPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREG 1038
Query: 60 AP--RGPHG--GAASAQDGRCPCGA 80
+P GP G GAA + R GA
Sbjct: 1039 SPGADGPPGRDGAAGVKGDRGETGA 1063
Score = 42.7 bits (99), Expect = 2e-04
Identities = 31/81 (38%), Positives = 36/81 (44%), Gaps = 19/81 (23%)
Query: 6 QGTGGSTGDADGPGGPGI-----------PDGPGGNAGGPGEAGATGGRGPRG----AGA 50
+G+ G+ G A PG PG P GP G G PG AG G +GP+G AG
Sbjct: 419 KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 478
Query: 51 ARASGPRG----GAPRGPHGG 67
A GP G RG GG
Sbjct: 479 QGAPGPAGEEGKRGARGEPGG 499
Score = 42.4 bits (98), Expect = 2e-04
Identities = 30/76 (39%), Positives = 32/76 (42%), Gaps = 17/76 (22%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG-------------AGA 50
QG G G PG G P G GN G PGE G +G GPRG AG
Sbjct: 200 QGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGK 259
Query: 51 ARASGPRGGAPRGPHG 66
+G RG P GP G
Sbjct: 260 PGKAGERG--PPGPQG 273
Score = 42.4 bits (98), Expect = 2e-04
Identities = 32/73 (43%), Positives = 32/73 (43%), Gaps = 16/73 (21%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------------AGAARA 53
G G GD DGP G P GP G AG G G G RG RG GA A
Sbjct: 954 GEKGEPGD-DGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGA 1012
Query: 54 SGPRGGAPRGPHG 66
SG RG P GP G
Sbjct: 1013 SGDRG--PPGPVG 1023
Score = 41.6 bits (96), Expect = 4e-04
Identities = 30/70 (42%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG-APRGP 64
+G G+ G DGP G P GP G G PG G G RG AG A G RG +GP
Sbjct: 719 RGLPGTPG-TDGPKGASGPAGPPGAQGPPGLQGMPGERG--AAGIAGPKGDRGDVGEKGP 775
Query: 65 HGGAASAQDG 74
G A +DG
Sbjct: 776 EG--APGKDG 783
Score = 41.2 bits (95), Expect = 5e-04
Identities = 29/81 (35%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 6 QGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
QG G GD G PG DG G G PG G G GP G G A+ GG
Sbjct: 131 QGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEK 190
Query: 64 PHGGAASAQDGRC-PCGARRP 83
G G P G R P
Sbjct: 191 AGGAQLGVMQGPMGPMGPRGP 211
Score = 41.2 bits (95), Expect = 5e-04
Identities = 37/93 (39%), Positives = 41/93 (44%), Gaps = 22/93 (23%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATG------GRGPRGAGAARASGPRG 58
GT GS G A G PG PG G+AG PG AGA G GP+ GA GP+G
Sbjct: 396 GTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQ--GATGPLGPKG 453
Query: 59 --GAP--------RGPHG--GAASAQDGRCPCG 79
G P +GP G G A Q P G
Sbjct: 454 QTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAG 486
Score = 40.4 bits (93), Expect = 8e-04
Identities = 26/61 (42%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 6 QGTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEA---GATGGRGPRGAGAARASGPRGGA 60
QG G G+ GP GP P GP G G GEA G G RGP G AR G
Sbjct: 224 QGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGL 283
Query: 61 P 61
P
Sbjct: 284 P 284
Score = 40.4 bits (93), Expect = 8e-04
Identities = 32/79 (40%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G+ G+ GP G P G G+ G PGE G G RG G +GP+G GP G
Sbjct: 525 GPKGAPGER-GPSGLAGPKGANGDPGRPGEPGLPGARGL--TGRPGDAGPQGKV--GPSG 579
Query: 67 GAASAQDGR----CPCGAR 81
A +DGR P GAR
Sbjct: 580 --APGEDGRPGPPGPQGAR 596
Score = 40.0 bits (92), Expect = 0.001
Identities = 22/59 (37%), Positives = 25/59 (42%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
+G G GD GP P GP G AG G G G +G +GA R G P P
Sbjct: 103 KGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNP 161
Score = 40.0 bits (92), Expect = 0.001
Identities = 31/82 (37%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRG- 58
G G TG GP GP +G G G PG AG+ G RG G G A +GP G
Sbjct: 783 GGRGLTGPI-GPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGA 841
Query: 59 -GAP--RGPHGGAASAQDGRCP 77
G P +G G A D P
Sbjct: 842 DGQPGAKGEQGEAGQKGDAGAP 863
Score = 40.0 bits (92), Expect = 0.001
Identities = 35/94 (37%), Positives = 38/94 (40%), Gaps = 17/94 (18%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA----SGPRG- 58
+G G G A PG GP P G G G G +GA G GP+G R G RG
Sbjct: 932 RGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE 991
Query: 59 ----GAPRGPHG-----GAASAQDGRCPCGARRP 83
G P GP G GA A R P G P
Sbjct: 992 RGFPGLP-GPSGEPGKQGAPGASGDRGPPGPVGP 1024
Score = 39.7 bits (91), Expect = 0.001
Identities = 29/79 (36%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGP 64
+G G G+ GP GP GP G G G G GG GP G G A G RG +
Sbjct: 464 KGEQGPKGEP-GPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDG 522
Query: 65 HGGAASAQDGRCPCGARRP 83
G A R P G P
Sbjct: 523 LAGPKGAPGERGPSGLAGP 541
Score = 39.7 bits (91), Expect = 0.001
Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G G + PG G P GP G G G+ G G GP+GA G P P
Sbjct: 570 GPQGKVGPSGAPGEDGRP-GPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGL 628
Query: 67 GAASAQDG 74
+DG
Sbjct: 629 RGLPGKDG 636
Score = 39.7 bits (91), Expect = 0.001
Identities = 40/113 (35%), Positives = 42/113 (37%), Gaps = 31/113 (27%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGN---------------AGGPGEAGATGGRGPRG-- 47
G G TG A PG G P DGP G G PG G G GP G
Sbjct: 1023 GPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPT 1082
Query: 48 -----AGAARASGPRGGAPRGPHGGAASAQDGRCPCG----ARRPDSRLLQLH 91
G A A GP G P GP GA Q + P G A P R L+ H
Sbjct: 1083 GKQGDRGEAGAQGPMG--PSGP-AGARGIQGPQGPRGDKGEAGEPGERGLKGH 1132
Score = 39.3 bits (90), Expect = 0.002
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGN---AGGPGEAGATGGRGPRG----AGAARASGPRG 58
+G G D GP GP P GP G G G+ G G GPRG G GP G
Sbjct: 106 KGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPG 165
Query: 59 GAPRGPHG 66
P GP G
Sbjct: 166 --PPGPPG 171
Score = 39.3 bits (90), Expect = 0.002
Identities = 31/83 (37%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG--GAPRG 63
+G G G+ PG G+ GP G G PG G G GP AG A GP G G P G
Sbjct: 698 RGERGFPGERGSPGAQGL-QGPRGLPGTPGTDGPKGASGP--AGPPGAQGPPGLQGMP-G 753
Query: 64 PHG--GAASAQDGRCPCGARRPD 84
G G A + R G + P+
Sbjct: 754 ERGAAGIAGPKGDRGDVGEKGPE 776
Score = 37.7 bits (86), Expect = 0.005
Identities = 29/68 (42%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAG--GP----GEAGATGGRGPRG-AGAARASGPRGG 59
G+ G+ G GP GP DGP G G GP GE G G GP G G GP G
Sbjct: 909 GSNGNPGPP-GPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGA 967
Query: 60 -APRGPHG 66
P GP G
Sbjct: 968 EGPPGPQG 975
Score = 37.4 bits (85), Expect = 0.007
Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G G+A PG G P GP G G PG G G +G RG + GAP G
Sbjct: 249 GKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAP-GV 307
Query: 65 HGGAASAQDGRCP 77
G + S + P
Sbjct: 308 KGESGSPGENGSP 320
Score = 36.6 bits (83), Expect = 0.012
Identities = 27/65 (41%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--G 59
A G G G PG GP G G G AG G RG RG G A GPRG G
Sbjct: 94 ATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDG 153
Query: 60 APRGP 64
P P
Sbjct: 154 EPGTP 158
Score = 36.2 bits (82), Expect = 0.016
Identities = 26/64 (40%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPRGGAPR 62
G G+ G G PG P G G G GE G G G RG G A+GP G P
Sbjct: 591 GPQGARGQPGVMGFPG-PKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG--PA 647
Query: 63 GPHG 66
GP G
Sbjct: 648 GPAG 651
Score = 36.2 bits (82), Expect = 0.016
Identities = 31/91 (34%), Positives = 34/91 (37%), Gaps = 17/91 (18%)
Query: 7 GTGGSTGDADGPGGPGI--------------PDGPGGNAGGPGEAGATGGRGPRGAGAAR 52
G G G+ PG PG+ P GP G AG GE GA G G +G
Sbjct: 612 GEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPP 671
Query: 53 ASGPRGGAPRGPHG--GAASAQDGRCPCGAR 81
GG P G G G A A P G R
Sbjct: 672 GPPGEGGKP-GDQGVPGEAGAPGLVGPRGER 701
Score = 35.8 bits (81), Expect = 0.020
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG-APRGPH 65
G G GD G G P+G G GG G G G GP G A+G +G P GP
Sbjct: 759 GIAGPKGDRGDVGEKG-PEGAPGKDGGRGLTGPIGPPGPAG-----ANGEKGEVGPPGPA 812
Query: 66 GGAAS 70
G A +
Sbjct: 813 GSAGA 817
Score = 34.3 bits (77), Expect = 0.059
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 10 GSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRGGAPR 62
G + G G+ GP G G G G G GP+G G SGP G PR
Sbjct: 185 GGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG--PR 242
Query: 63 GPHG 66
GP G
Sbjct: 243 GPPG 246
Score = 34.3 bits (77), Expect = 0.059
Identities = 24/59 (40%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAG----AARASGPRGGAP 61
G G G GP GP G G AG PG G G GP G G A GPR P
Sbjct: 1176 GANGIPGPI-GPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGP 1233
Score = 33.5 bits (75), Expect = 0.10
Identities = 30/88 (34%), Positives = 31/88 (35%), Gaps = 28/88 (31%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------GNAGGPGE---AGATGGRGPRGA------- 48
G G G A GPG PG P G G G G G G GP GA
Sbjct: 354 GPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTD 413
Query: 49 ------GAARASGPRGG----APRGPHG 66
G+A A G G PRGP G
Sbjct: 414 GIPGAKGSAGAPGIAGAPGFPGPRGPPG 441
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 54.7 bits (130), Expect = 4e-08
Identities = 34/74 (45%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAAR----ASGPRG--GA 60
G G+ G+ DG GP P GP G AGGPG GA G +G G AR A GPRG G
Sbjct: 270 GAAGARGN-DGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGT 328
Query: 61 PRGPHGGAASAQDG 74
P P AS G
Sbjct: 329 PGSPGPAGASGNPG 342
Score = 53.1 bits (126), Expect = 1e-07
Identities = 33/69 (47%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRG-AGAARASGPRGG 59
+G G TG PG PG P PG G G GEAGA G GP G AGA GP+G
Sbjct: 986 KGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQG- 1044
Query: 60 APRGPHGGA 68
PRG G A
Sbjct: 1045 -PRGDKGEA 1052
Score = 52.0 bits (123), Expect = 3e-07
Identities = 38/84 (45%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPRG- 58
QG G GDA PG GP GP G G G GA G +GP GA GAA GP G
Sbjct: 782 QGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGS 841
Query: 59 -GAPRGPHGGAASAQDGRCPCGAR 81
G P P S +DG P GAR
Sbjct: 842 NGNPGPPGPPGPSGKDG--PKGAR 863
Score = 49.7 bits (117), Expect = 1e-06
Identities = 39/91 (42%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG-----G 59
QG G++GD GP GP P G G AG PG G+ G GP G GAA G RG G
Sbjct: 938 QGAPGASGDR-GPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVG 996
Query: 60 AP--RGPHG-----GAASAQDGRCPCGARRP 83
AP GP G G Q R GA+ P
Sbjct: 997 APGAPGPPGSPGPAGPTGKQGDRGEAGAQGP 1027
Score = 48.5 bits (114), Expect = 3e-06
Identities = 38/92 (41%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 3 AEGQ-GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPR 57
A+G+ G G G++ PG G P GP G G PGE G TG G GA G +GP
Sbjct: 229 AKGEAGAPGVKGESGSPGENGSP-GPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPP 287
Query: 58 GGAPRGPHG-----GAASAQDGRCPCGARRPD 84
G P GP G GA A+ P GAR P+
Sbjct: 288 G--PVGPAGGPGFPGAPGAKGEAGPTGARGPE 317
Score = 48.1 bits (113), Expect = 4e-06
Identities = 30/67 (44%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 7 GTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGG---RGPRG-AGAARASGPRGGA 60
G GG GD PG G P GP G G PGE G+ G +GPRG G GP+G +
Sbjct: 606 GEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGAS 665
Query: 61 -PRGPHG 66
P GP G
Sbjct: 666 GPAGPPG 672
Score = 47.4 bits (111), Expect = 7e-06
Identities = 36/87 (41%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 2 QAEGQGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRG----------PRGAG 49
+A QG G +G A G GP P G G AG PGE G G RG P +G
Sbjct: 1021 EAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSG 1080
Query: 50 AARASGPRG-GAPRGPHGGAA-SAQDG 74
ASGP G PRGP G S +DG
Sbjct: 1081 DQGASGPAGPSGPRGPPGPVGPSGKDG 1107
Score = 47.0 bits (110), Expect = 9e-06
Identities = 39/94 (41%), Positives = 43/94 (45%), Gaps = 20/94 (21%)
Query: 6 QGTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRG----------AGAARA 53
QG G +G PG PG P G G+ G PGEAGA G GPRG GA
Sbjct: 587 QGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGL 646
Query: 54 SGPRG--GAP--RGPHGGAASAQDGRCPCGARRP 83
GPRG G P GP G + A P GA+ P
Sbjct: 647 QGPRGLPGTPGTDGPKGASGPAG----PPGAQGP 676
Score = 45.4 bits (106), Expect = 3e-05
Identities = 31/62 (50%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGPH 65
GT G G A GP GP GP G G PGE GA G GP+G G GP GAP G
Sbjct: 657 GTDGPKG-ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPE-GAP-GKD 713
Query: 66 GG 67
GG
Sbjct: 714 GG 715
Score = 45.4 bits (106), Expect = 3e-05
Identities = 33/82 (40%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-A 60
A +G G G+ GP GP GP G G PG G G G +G AGA GP G
Sbjct: 746 AGARGAPGERGET-GPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 804
Query: 61 PRGPHG--GAASAQDGRCPCGA 80
P+GP G G A+ + P GA
Sbjct: 805 PQGPTGVTGPKGARGAQGPPGA 826
Score = 45.1 bits (105), Expect = 3e-05
Identities = 34/88 (38%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 5 GQGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP- 61
G G G G+ PG G P DG G G PGE G +G GP+GA G P
Sbjct: 430 GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPG 489
Query: 62 -RGPHG--GAASAQDGRCPCGARRPDSR 86
RG G G A Q P GA D R
Sbjct: 490 ARGLTGRPGDAGPQGKVGPSGAPGEDGR 517
Score = 44.7 bits (104), Expect = 4e-05
Identities = 28/63 (44%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-APRG 63
QG G G + GP GP P GP G G G G G GPRG +G +GP G P G
Sbjct: 1082 QGASGPAGPS-GPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPG 1140
Query: 64 PHG 66
P G
Sbjct: 1141 PPG 1143
Score = 44.3 bits (103), Expect = 6e-05
Identities = 27/59 (45%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 9 GGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRGGAPRGPHG 66
G G GP GP P GP G AG PG G G G P G + GPRG P GP G
Sbjct: 124 GAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRG--PPGPPG 180
Score = 44.3 bits (103), Expect = 6e-05
Identities = 32/73 (43%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 6 QGTGGSTG-----DADGPGG-PGIP--DGPGGNAGGPGEAGATGGRGPRG----AGAARA 53
+G G TG A GP G PG P GP G +G PG G G +G G AGA
Sbjct: 305 KGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGF 364
Query: 54 SGPRGGAPRGPHG 66
GPRG P GP G
Sbjct: 365 PGPRG--PPGPQG 375
Score = 44.3 bits (103), Expect = 6e-05
Identities = 32/83 (38%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGA-----ARASGPRGGA 60
QG G+TG G G P G GN G PG G +G GP+GA RA P
Sbjct: 821 QGPPGATGFPGAAGRVG-PPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQG 879
Query: 61 PRGPHGGAASAQDGRCPCGARRP 83
P GP G D P GA P
Sbjct: 880 PAGPPGEKGEPGDDG-PSGAEGP 901
Score = 43.5 bits (101), Expect = 1e-04
Identities = 29/63 (46%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 7 GTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA-SGPRGGAPRG 63
G G +GD A GP GP P GP G G G+ GA G GP G R SG G P G
Sbjct: 1074 GPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETG--PAG 1131
Query: 64 PHG 66
P G
Sbjct: 1132 PPG 1134
Score = 43.1 bits (100), Expect = 1e-04
Identities = 31/66 (46%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAPR 62
G G G GG G+ P GP G AG GE G G GP G AGA A G RG P
Sbjct: 702 GEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPP 761
Query: 63 GPHGGA 68
GP G A
Sbjct: 762 GPAGFA 767
Score = 43.1 bits (100), Expect = 1e-04
Identities = 34/85 (40%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-----G 59
+G G G G PG+P GP G G G GA+G RGP G G +GP G G
Sbjct: 911 RGIVGLPGQRGERGFPGLP-GPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREG 969
Query: 60 AP--RGPHG--GAASAQDGRCPCGA 80
+P GP G GAA + R GA
Sbjct: 970 SPGADGPPGRDGAAGVKGDRGETGA 994
Score = 42.7 bits (99), Expect = 2e-04
Identities = 31/81 (38%), Positives = 36/81 (44%), Gaps = 19/81 (23%)
Query: 6 QGTGGSTGDADGPGGPGI-----------PDGPGGNAGGPGEAGATGGRGPRG----AGA 50
+G+ G+ G A PG PG P GP G G PG AG G +GP+G AG
Sbjct: 350 KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 409
Query: 51 ARASGPRG----GAPRGPHGG 67
A GP G RG GG
Sbjct: 410 QGAPGPAGEEGKRGARGEPGG 430
Score = 42.4 bits (98), Expect = 2e-04
Identities = 30/76 (39%), Positives = 32/76 (42%), Gaps = 17/76 (22%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG-------------AGA 50
QG G G PG G P G GN G PGE G +G GPRG AG
Sbjct: 131 QGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGK 190
Query: 51 ARASGPRGGAPRGPHG 66
+G RG P GP G
Sbjct: 191 PGKAGERG--PPGPQG 204
Score = 42.4 bits (98), Expect = 2e-04
Identities = 32/73 (43%), Positives = 32/73 (43%), Gaps = 16/73 (21%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------------AGAARA 53
G G GD DGP G P GP G AG G G G RG RG GA A
Sbjct: 885 GEKGEPGD-DGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGA 943
Query: 54 SGPRGGAPRGPHG 66
SG RG P GP G
Sbjct: 944 SGDRG--PPGPVG 954
Score = 41.6 bits (96), Expect = 4e-04
Identities = 30/70 (42%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG-APRGP 64
+G G+ G DGP G P GP G G PG G G RG AG A G RG +GP
Sbjct: 650 RGLPGTPG-TDGPKGASGPAGPPGAQGPPGLQGMPGERG--AAGIAGPKGDRGDVGEKGP 706
Query: 65 HGGAASAQDG 74
G A +DG
Sbjct: 707 EG--APGKDG 714
Score = 41.2 bits (95), Expect = 5e-04
Identities = 29/81 (35%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 6 QGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
QG G GD G PG DG G G PG G G GP G G A+ GG
Sbjct: 62 QGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEK 121
Query: 64 PHGGAASAQDGRC-PCGARRP 83
G G P G R P
Sbjct: 122 AGGAQLGVMQGPMGPMGPRGP 142
Score = 41.2 bits (95), Expect = 5e-04
Identities = 37/93 (39%), Positives = 41/93 (44%), Gaps = 22/93 (23%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATG------GRGPRGAGAARASGPRG 58
GT GS G A G PG PG G+AG PG AGA G GP+ GA GP+G
Sbjct: 327 GTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQ--GATGPLGPKG 384
Query: 59 --GAP--------RGPHG--GAASAQDGRCPCG 79
G P +GP G G A Q P G
Sbjct: 385 QTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAG 417
Score = 40.4 bits (93), Expect = 8e-04
Identities = 26/61 (42%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 6 QGTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEA---GATGGRGPRGAGAARASGPRGGA 60
QG G G+ GP GP P GP G G GEA G G RGP G AR G
Sbjct: 155 QGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGL 214
Query: 61 P 61
P
Sbjct: 215 P 215
Score = 40.4 bits (93), Expect = 8e-04
Identities = 32/79 (40%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G+ G+ GP G P G G+ G PGE G G RG G +GP+G GP G
Sbjct: 456 GPKGAPGER-GPSGLAGPKGANGDPGRPGEPGLPGARGL--TGRPGDAGPQGKV--GPSG 510
Query: 67 GAASAQDGR----CPCGAR 81
A +DGR P GAR
Sbjct: 511 --APGEDGRPGPPGPQGAR 527
Score = 40.0 bits (92), Expect = 0.001
Identities = 22/59 (37%), Positives = 25/59 (42%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
+G G GD GP P GP G AG G G G +G +GA R G P P
Sbjct: 34 KGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNP 92
Score = 40.0 bits (92), Expect = 0.001
Identities = 31/82 (37%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRG- 58
G G TG GP GP +G G G PG AG+ G RG G G A +GP G
Sbjct: 714 GGRGLTGPI-GPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGA 772
Query: 59 -GAP--RGPHGGAASAQDGRCP 77
G P +G G A D P
Sbjct: 773 DGQPGAKGEQGEAGQKGDAGAP 794
Score = 40.0 bits (92), Expect = 0.001
Identities = 35/94 (37%), Positives = 38/94 (40%), Gaps = 17/94 (18%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARA----SGPRG- 58
+G G G A PG GP P G G G G +GA G GP+G R G RG
Sbjct: 863 RGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE 922
Query: 59 ----GAPRGPHG-----GAASAQDGRCPCGARRP 83
G P GP G GA A R P G P
Sbjct: 923 RGFPGLP-GPSGEPGKQGAPGASGDRGPPGPVGP 955
Score = 39.7 bits (91), Expect = 0.001
Identities = 29/79 (36%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGP 64
+G G G+ GP GP GP G G G G GG GP G G A G RG +
Sbjct: 395 KGEQGPKGEP-GPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDG 453
Query: 65 HGGAASAQDGRCPCGARRP 83
G A R P G P
Sbjct: 454 LAGPKGAPGERGPSGLAGP 472
Score = 39.7 bits (91), Expect = 0.001
Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G G + PG G P GP G G G+ G G GP+GA G P P
Sbjct: 501 GPQGKVGPSGAPGEDGRP-GPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGL 559
Query: 67 GAASAQDG 74
+DG
Sbjct: 560 RGLPGKDG 567
Score = 39.7 bits (91), Expect = 0.001
Identities = 40/113 (35%), Positives = 42/113 (37%), Gaps = 31/113 (27%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGN---------------AGGPGEAGATGGRGPRG-- 47
G G TG A PG G P DGP G G PG G G GP G
Sbjct: 954 GPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPT 1013
Query: 48 -----AGAARASGPRGGAPRGPHGGAASAQDGRCPCG----ARRPDSRLLQLH 91
G A A GP G P GP GA Q + P G A P R L+ H
Sbjct: 1014 GKQGDRGEAGAQGPMG--PSGP-AGARGIQGPQGPRGDKGEAGEPGERGLKGH 1063
Score = 39.3 bits (90), Expect = 0.002
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGN---AGGPGEAGATGGRGPRG----AGAARASGPRG 58
+G G D GP GP P GP G G G+ G G GPRG G GP G
Sbjct: 37 KGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPG 96
Query: 59 GAPRGPHG 66
P GP G
Sbjct: 97 --PPGPPG 102
Score = 39.3 bits (90), Expect = 0.002
Identities = 31/83 (37%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG--GAPRG 63
+G G G+ PG G+ GP G G PG G G GP AG A GP G G P G
Sbjct: 629 RGERGFPGERGSPGAQGL-QGPRGLPGTPGTDGPKGASGP--AGPPGAQGPPGLQGMP-G 684
Query: 64 PHG--GAASAQDGRCPCGARRPD 84
G G A + R G + P+
Sbjct: 685 ERGAAGIAGPKGDRGDVGEKGPE 707
Score = 37.7 bits (86), Expect = 0.005
Identities = 29/68 (42%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAG--GP----GEAGATGGRGPRG-AGAARASGPRGG 59
G+ G+ G GP GP DGP G G GP GE G G GP G G GP G
Sbjct: 840 GSNGNPGPP-GPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGA 898
Query: 60 -APRGPHG 66
P GP G
Sbjct: 899 EGPPGPQG 906
Score = 37.4 bits (85), Expect = 0.007
Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G G+A PG G P GP G G PG G G +G RG + GAP G
Sbjct: 180 GKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAP-GV 238
Query: 65 HGGAASAQDGRCP 77
G + S + P
Sbjct: 239 KGESGSPGENGSP 251
Score = 36.2 bits (82), Expect = 0.016
Identities = 26/64 (40%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPRGGAPR 62
G G+ G G PG P G G G GE G G G RG G A+GP G P
Sbjct: 522 GPQGARGQPGVMGFPG-PKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG--PA 578
Query: 63 GPHG 66
GP G
Sbjct: 579 GPAG 582
Score = 36.2 bits (82), Expect = 0.016
Identities = 31/91 (34%), Positives = 34/91 (37%), Gaps = 17/91 (18%)
Query: 7 GTGGSTGDADGPGGPGI--------------PDGPGGNAGGPGEAGATGGRGPRGAGAAR 52
G G G+ PG PG+ P GP G AG GE GA G G +G
Sbjct: 543 GEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPP 602
Query: 53 ASGPRGGAPRGPHG--GAASAQDGRCPCGAR 81
GG P G G G A A P G R
Sbjct: 603 GPPGEGGKP-GDQGVPGEAGAPGLVGPRGER 632
Score = 35.8 bits (81), Expect = 0.020
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG-APRGPH 65
G G GD G G P+G G GG G G G GP G A+G +G P GP
Sbjct: 690 GIAGPKGDRGDVGEKG-PEGAPGKDGGRGLTGPIGPPGPAG-----ANGEKGEVGPPGPA 743
Query: 66 GGAAS 70
G A +
Sbjct: 744 GSAGA 748
Score = 34.3 bits (77), Expect = 0.059
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 10 GSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRGGAPR 62
G + G G+ GP G G G G G GP+G G SGP G PR
Sbjct: 116 GGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG--PR 173
Query: 63 GPHG 66
GP G
Sbjct: 174 GPPG 177
Score = 34.3 bits (77), Expect = 0.059
Identities = 24/59 (40%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAG----AARASGPRGGAP 61
G G G GP GP G G AG PG G G GP G G A GPR P
Sbjct: 1107 GANGIPGPI-GPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGP 1164
Score = 33.5 bits (75), Expect = 0.10
Identities = 30/88 (34%), Positives = 31/88 (35%), Gaps = 28/88 (31%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------GNAGGPGE---AGATGGRGPRGA------- 48
G G G A GPG PG P G G G G G G GP GA
Sbjct: 285 GPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTD 344
Query: 49 ------GAARASGPRGG----APRGPHG 66
G+A A G G PRGP G
Sbjct: 345 GIPGAKGSAGAPGIAGAPGFPGPRGPPG 372
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 54.3 bits (129), Expect = 6e-08
Identities = 33/77 (42%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRGGA---- 60
+G+ G G+ GP GP GP G AG PG G G +GP+G G +GP G A
Sbjct: 708 RGSPGERGEV-GPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAG 766
Query: 61 PRGPHGGAASAQDGRCP 77
P GP G A S DG P
Sbjct: 767 PNGPPGPAGSRGDGGPP 783
Score = 51.2 bits (121), Expect = 5e-07
Identities = 36/91 (39%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG----- 59
+G G G+ PG G PG G PG AGATG RG G AG A +GPRG
Sbjct: 657 KGEPGLRGEIGNPGRDGARGAPGA-VGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERG 715
Query: 60 --APRGPHG-----GAASAQDGRCPCGARRP 83
P GP+G GAA + GA+ P
Sbjct: 716 EVGPAGPNGFAGPAGAAGQPGAKGERGAKGP 746
Score = 50.8 bits (120), Expect = 6e-07
Identities = 32/71 (45%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
QG GS G A GP GP P G G G PG G G RGP+G G A GP G P
Sbjct: 1041 QGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPG--PP 1098
Query: 63 GPHGGAASAQD 73
GP G + D
Sbjct: 1099 GPPGVSGGGYD 1109
Score = 48.1 bits (113), Expect = 4e-06
Identities = 33/80 (41%), Positives = 36/80 (45%), Gaps = 19/80 (23%)
Query: 6 QGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGE------------AGATGGRGPRG- 47
QG G G+ PG PG P GP G G PGE AG G RGP G
Sbjct: 537 QGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGE 596
Query: 48 AGAARASGPRGG-APRGPHG 66
+GAA +GP G P GP G
Sbjct: 597 SGAAGPTGPIGSRGPSGPPG 616
Score = 47.8 bits (112), Expect = 5e-06
Identities = 36/84 (42%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG--GA 60
G G +G+A G PG P GP G G PG G G RG RG AGA GP G G
Sbjct: 844 GEKGPSGEAGTAGPPGTP-GPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGP 902
Query: 61 P--RGPHGGAASAQDGRCPCGARR 82
P RGP G S P A R
Sbjct: 903 PGARGPPGAVGSPGVNGAPGEAGR 926
Score = 45.1 bits (105), Expect = 3e-05
Identities = 35/83 (42%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPG---EAGATGGRGPRGAGAARASGPRGG-APR 62
G G+ G+A G PG DGP G G PG E G G GP GAA A GP G P
Sbjct: 916 GVNGAPGEAGRDGNPG-NDGPPGRDGQPGHKGERGYPGNIGP--VGAAGAPGPHGPVGPA 972
Query: 63 GPHG--GAASAQDGRCPCGARRP 83
G HG G P GA P
Sbjct: 973 GKHGNRGETGPSGPVGPAGAVGP 995
Score = 44.7 bits (104), Expect = 4e-05
Identities = 30/61 (49%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRGGAPRGPH 65
G G+ G +DG GP P GP G+AG PG GA G +G GA G A +GP G PRG
Sbjct: 229 GPAGARG-SDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAG--PRGEV 285
Query: 66 G 66
G
Sbjct: 286 G 286
Score = 43.9 bits (102), Expect = 7e-05
Identities = 24/57 (42%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
G G TG G GP P GP GN G PG GA G GP G G P G
Sbjct: 598 GAAGPTGPI-GSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGG 653
Score = 43.5 bits (101), Expect = 1e-04
Identities = 35/89 (39%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG--- 58
+G G G GP GP GP G G PG AG+ G GP G GAA +GP G
Sbjct: 744 KGPKGENGVV-GPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSG 802
Query: 59 -GAPRGPHGGAASAQDGRCPCGARRPDSR 86
P GP G A + R P G + P R
Sbjct: 803 ISGPPGP-PGPAGKEGLRGPRGDQGPVGR 830
Score = 43.1 bits (100), Expect = 1e-04
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 3 AEGQGTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG 59
A +G G+ G+ + GP GP P G G G GEAG+ G GP G G+ + G G
Sbjct: 351 AGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGA 410
Query: 60 APRGPHGGAASAQDGRCPCGARRPD 84
R G ++ P G R P+
Sbjct: 411 DGRAGVMGPPGSRGASGPAGVRGPN 435
Score = 43.1 bits (100), Expect = 1e-04
Identities = 28/60 (46%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G G A PG G P GP G G GE G +G GP G A GPRG P GP G
Sbjct: 952 GNIGPVGAAGAPGPHG-PVGPAGKHGNRGETGPSGPVGPAG-----AVGPRG--PSGPQG 1003
Score = 42.7 bits (99), Expect = 2e-04
Identities = 28/77 (36%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 5 GQGTGGSTGDADGPGGPGIP-----DGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG 58
G G G G PG G P GP G G PG+ G G RGP G G A G G
Sbjct: 89 GPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPG 148
Query: 59 GAPRGPHGGAASAQDGR 75
R G Q R
Sbjct: 149 KPGRPGERGVVGPQGAR 165
Score = 42.7 bits (99), Expect = 2e-04
Identities = 29/66 (43%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGA-GAARASGPRGGAPR 62
+G G+ G PG PG PG G G PGE G G GP GA G+ + GP G P
Sbjct: 189 KGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVG--PA 246
Query: 63 GPHGGA 68
GP G A
Sbjct: 247 GPIGSA 252
Score = 42.7 bits (99), Expect = 2e-04
Identities = 37/98 (37%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 6 QGTGGSTGDADGPGGPG---IPDGPGGNAGGPGEAGATGGRGPRGA----------GAAR 52
+G G G A PG PG IP GP G AG G G G GP G+ G+A
Sbjct: 309 KGAAGLPGVAGAPGLPGPRGIP-GPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAG 367
Query: 53 ASGPRGGA----PRGPHGGAASAQDGRCPCGARRPDSR 86
GP G + RGP+G A SA P P SR
Sbjct: 368 PQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSR 405
Score = 42.4 bits (98), Expect = 2e-04
Identities = 35/89 (39%), Positives = 38/89 (42%), Gaps = 17/89 (19%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRG- 58
G G G A G PG PDG G G PG G GG+G +G G SGP G
Sbjct: 508 GDKGHAGLAGARGAPG-PDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGE 566
Query: 59 -GAP--RGPHG-----GAASAQDGRCPCG 79
G P RG HG G A + R P G
Sbjct: 567 VGKPGERGLHGEFGLPGPAGPRGERGPPG 595
Score = 42.0 bits (97), Expect = 3e-04
Identities = 37/109 (33%), Positives = 43/109 (39%), Gaps = 34/109 (31%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----------------- 47
G G TG + GP G P GP G G G+ G G +GPRG
Sbjct: 976 GNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIA 1035
Query: 48 -----AGAARASGPRGGAPRGPHGGAASA-QDGRC-------PCGARRP 83
GA + GP G PRGP G + A +DGR P G R P
Sbjct: 1036 GHHGDQGAPGSVGPAG--PRGPAGPSGPAGKDGRTGHPGTVGPAGIRGP 1082
Score = 41.2 bits (95), Expect = 5e-04
Identities = 29/71 (40%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG---- 58
A +G+ GS G GP GP GP G G PG G G G AG A +GPRG
Sbjct: 231 AGARGSDGSVGPV-GPAGPIGSAGPPGFPGAPGPKGEIGAVG--NAGPAGPAGPRGEVGL 287
Query: 59 ---GAPRGPHG 66
P GP G
Sbjct: 288 PGLSGPVGPPG 298
Score = 41.2 bits (95), Expect = 5e-04
Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--------GNAGGPGEAGATGGRGPRGAGAARASGPR 57
+G G G A PG PG+ PG G AG G G+ G GP G R
Sbjct: 381 RGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGR 440
Query: 58 GGAP--RGPHG 66
G P GP G
Sbjct: 441 PGEPGLMGPRG 451
Score = 41.2 bits (95), Expect = 5e-04
Identities = 33/84 (39%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGA-GAARASGPRGG 59
QG G G G G G P PG G +G GE G G RG G G +GPRG
Sbjct: 531 QGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRG- 589
Query: 60 APRGPHGGAASAQDGRCPCGARRP 83
RGP G + +A P G+R P
Sbjct: 590 -ERGPPGESGAA-GPTGPIGSRGP 611
Score = 40.0 bits (92), Expect = 0.001
Identities = 31/87 (35%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGN--------AGGPGEAGATGGRGPRGA-GAARASGP 56
QG G G+ G G+P G N AG G+ GA G GP G G A SGP
Sbjct: 1002 QGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGP 1061
Query: 57 RGGAPRGPHGGAASAQDGRCPCGARRP 83
G R H G R P G + P
Sbjct: 1062 AGKDGRTGHPGTVGPAGIRGPQGHQGP 1088
Score = 39.7 bits (91), Expect = 0.001
Identities = 35/88 (39%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 2 QAEGQGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG 58
Q +G+G G GPG G+ P GP G AG PG G G G P G +G RG
Sbjct: 80 QYDGKGVGL------GPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARG 133
Query: 59 GAPRGPHGGAASAQDGRCPCGARRPDSR 86
P GP G A +DG P RP R
Sbjct: 134 --PAGPPGKA--GEDGH-PGKPGRPGER 156
Score = 39.3 bits (90), Expect = 0.002
Identities = 30/96 (31%), Positives = 36/96 (37%), Gaps = 27/96 (28%)
Query: 7 GTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGAT------GGRGPRG----- 47
G G G+ PG G+ P GP G G PGE+GA G RGP G
Sbjct: 559 GPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPD 618
Query: 48 --------AGAARASGPRGGAPRGPHGGAASAQDGR 75
GA +GP G + GAA G+
Sbjct: 619 GNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGK 654
Score = 38.9 bits (89), Expect = 0.002
Identities = 37/92 (40%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 7 GTGGSTGD--ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPRG-- 58
G G G+ A G GP P GP G G PG +G G G GA GA A+G G
Sbjct: 259 GAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVA 318
Query: 59 GAP--RGPHG-----GAASAQDGRCPCGARRP 83
GAP GP G GAA A R G P
Sbjct: 319 GAPGLPGPRGIPGPVGAAGATGARGLVGEPGP 350
Score = 38.9 bits (89), Expect = 0.002
Identities = 32/73 (43%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG----PRGAGAARASGPRG---- 58
G GS G A GP G GP G+AG PGE G G RG P G A GP G
Sbjct: 418 GPPGSRG-ASGPAGVR---GPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGI 473
Query: 59 -GAPRGPHGGAAS 70
G P GP G A +
Sbjct: 474 DGRP-GPIGPAGA 485
Score = 38.9 bits (89), Expect = 0.002
Identities = 26/61 (42%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRGG----APRGPH 65
GP GP G GN G PG G TG G G AGA A GP G P GP
Sbjct: 478 GPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQ 537
Query: 66 G 66
G
Sbjct: 538 G 538
Score = 38.9 bits (89), Expect = 0.002
Identities = 28/83 (33%), Positives = 32/83 (38%), Gaps = 10/83 (12%)
Query: 6 QGTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPR 57
+G G G G PG+ P GP G G G AG GG+G +G R G
Sbjct: 609 RGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLR--GEI 666
Query: 58 GGAPRGPHGGAASAQDGRCPCGA 80
G R GA A P GA
Sbjct: 667 GNPGRDGARGAPGAVGAPGPAGA 689
Score = 38.1 bits (87), Expect = 0.004
Identities = 31/84 (36%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG------- 59
G G G+ PG PG DG G G PG G G G G AA+ G G
Sbjct: 36 GDRGPRGERGPPGPPG-RDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMG 94
Query: 60 --APRGPHG--GAASAQDGRCPCG 79
PRGP G GA Q + P G
Sbjct: 95 LMGPRGPPGAAGAPGPQGFQGPAG 118
Score = 37.7 bits (86), Expect = 0.005
Identities = 28/77 (36%), Positives = 30/77 (38%), Gaps = 15/77 (19%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGG-- 59
+G G G PG PG+ G G PGE G G G RG G A GP G
Sbjct: 180 RGHNGLDGLKGQPGAPGVK----GEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARG 235
Query: 60 -----APRGPHGGAASA 71
P GP G SA
Sbjct: 236 SDGSVGPVGPAGPIGSA 252
Score = 37.4 bits (85), Expect = 0.007
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G G+ PG G PG G+ G G AGA G GP G A+ GP G P+G
Sbjct: 484 GARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQ--GPPG--PQGV 539
Query: 65 HGG 67
GG
Sbjct: 540 QGG 542
Score = 37.0 bits (84), Expect = 0.009
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G TG A G GP P G G G PG+ G G RG G AR G P
Sbjct: 121 GEPGQTGPA-GARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLP 174
Score = 37.0 bits (84), Expect = 0.009
Identities = 31/70 (44%), Positives = 34/70 (48%), Gaps = 16/70 (22%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAG--GP-GEAGATGGRGPRGAGAARASGPRG----- 58
G G+ G A GP GP P G GN G GP G G G GPRG SGP+G
Sbjct: 955 GPVGAAG-APGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRG-----PSGPQGIRGDK 1008
Query: 59 GAP--RGPHG 66
G P +GP G
Sbjct: 1009 GEPGEKGPRG 1018
Score = 35.8 bits (81), Expect = 0.020
Identities = 28/78 (35%), Positives = 30/78 (38%), Gaps = 20/78 (25%)
Query: 7 GTGGSTGDADGPG--------GPGIPDGPGGNAGGPGEAGATGGRGPRG----------A 48
GT G TG PG GP G G+ G G AG G GP G
Sbjct: 208 GTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEI 267
Query: 49 GAARASGPRGGAPRGPHG 66
GA +GP G P GP G
Sbjct: 268 GAVGNAGPAG--PAGPRG 283
Score = 35.8 bits (81), Expect = 0.020
Identities = 31/97 (31%), Positives = 34/97 (35%), Gaps = 24/97 (24%)
Query: 7 GTGGSTGDADGPGGPGI------PDGPG--------------GNAGGPGEAGATGGRG-P 45
G G GDA PG PG+ P PG G G PG G G RG P
Sbjct: 430 GVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEP 489
Query: 46 RGAGAARASGPRGGAPRG---PHGGAASAQDGRCPCG 79
G GP G + H G A A+ P G
Sbjct: 490 GNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDG 526
Score = 35.0 bits (79), Expect = 0.035
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG--GAP 61
QG G G+ GP G P GP G AG G G G G RG GP+G G P
Sbjct: 114 QGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERG-----VVGPQGARGFP 168
Query: 62 RGP 64
P
Sbjct: 169 GTP 171
Score = 35.0 bits (79), Expect = 0.035
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 7 GTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G G+ PG PG P GP G G PG G G +G RG + GAP
Sbjct: 136 GPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAP 195
Score = 34.7 bits (78), Expect = 0.045
Identities = 25/64 (39%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPRGGAP--R 62
G GS G+ PG G PG G AG PG G G G G A R G P
Sbjct: 874 GLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGND 933
Query: 63 GPHG 66
GP G
Sbjct: 934 GPPG 937
Score = 33.9 bits (76), Expect = 0.077
Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 7 GTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGA 60
G G +G + PG PG GP G+ G G G G GP G AG SG G A
Sbjct: 796 GPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTA 855
Query: 61 PRGPHG 66
GP G
Sbjct: 856 --GPPG 859
Score = 33.5 bits (75), Expect = 0.10
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHGGAASAQDGR 75
GP G P G G G PG G G GP G GP G P G G A+ DG+
Sbjct: 33 GPAGDRGPRGERGPPGPPGRDGEDGPTGPPG-----PPGPPG--PPGLGGNFAAQYDGK 84
Score = 32.0 bits (71), Expect = 0.29
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 7 GTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRG 63
G G G A +G GP GP G G G G G G +G +G A +GP G G
Sbjct: 805 GPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPG--TPG 862
Query: 64 PHG 66
P G
Sbjct: 863 PQG 865
Score = 32.0 bits (71), Expect = 0.29
Identities = 36/102 (35%), Positives = 38/102 (37%), Gaps = 26/102 (25%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATG--GR-------GPRGA-GAARAS 54
G G+ G+ G GP GP G G PG GA G GR GP G G
Sbjct: 886 GVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHK 945
Query: 55 GPRG-----------GAPRGPHG--GAASAQDGRCPCGARRP 83
G RG GAP GPHG G A R G P
Sbjct: 946 GERGYPGNIGPVGAAGAP-GPHGPVGPAGKHGNRGETGPSGP 986
Score = 30.0 bits (66), Expect = 1.1
Identities = 25/66 (37%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 7 GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPR 57
G G G PG PG P G G G PG G G RG G G A G +
Sbjct: 139 GKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVK 198
Query: 58 G--GAP 61
G GAP
Sbjct: 199 GEPGAP 204
Score = 27.7 bits (60), Expect = 5.6
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATG 41
+G G G A GP GP P GP G +GG + G G
Sbjct: 1080 RGPQGHQGPA-GPPGPPGPPGPPGVSGGGYDFGYDG 1114
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 52.4 bits (124), Expect = 2e-07
Identities = 38/85 (44%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG----AGAARASGPRG- 58
QG G GD G GIP PG G G PG AG G GP G GA A+GP G
Sbjct: 207 QGKPGPKGDVGASGEQGIPGPPGPQGIRGYPGMAGPKGETGPHGYKGMVGAIGATGPPGE 266
Query: 59 GAPRGPHGGAASAQDGRCPCGARRP 83
PRGP G A D P G R P
Sbjct: 267 EGPRGPPGRAGEKGDEGSP-GIRGP 290
Score = 43.9 bits (102), Expect = 7e-05
Identities = 35/87 (40%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 2 QAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
QA G+ G G A PG PG GP G+ G PG G G GP G GPRG
Sbjct: 323 QAGQPGSPGHQGLAGVPGQPGTKGGP-GDQGEPGPQGLPGFSGP--PGKEGEPGPRGEI- 378
Query: 62 RGPHG--GAASAQDGRCPCGARRPDSR 86
GP G G Q R P G P R
Sbjct: 379 -GPQGIMGQKGDQGERGPVGQPGPQGR 404
Score = 40.0 bits (92), Expect = 0.001
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 3 AEGQGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
A+ +G G G PG PG+P DG G+ G PG+AG G +G G A GP G
Sbjct: 23 AQIRGPPGERGPPGPPGPPGVPGSDGIDGDNGPPGKAGPPGPKGE--PGKAGPDGPDG 78
Score = 38.9 bits (89), Expect = 0.002
Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G G G PG P GP G+AG PG G G GPRG R + G +G G
Sbjct: 460 GEPGPKGQQGVRGEPGYP-GPSGDAGAPGVQGYPGPPGPRGLAGNRGVPGQPGR-QGVEG 517
Query: 67 GAASAQ 72
A+ Q
Sbjct: 518 RDATDQ 523
Score = 38.5 bits (88), Expect = 0.003
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 7 GTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G+TG +GP GP G G+ G PG G G GP+GA + G P P
Sbjct: 256 GAIGATGPPGEEGPRGPPGRAGEKGDEGSPGIRGPQGITGPKGATGPPGINGKDGTPGTP 315
Query: 65 HGGAASAQDGR 75
++ Q G+
Sbjct: 316 GMKGSAGQAGQ 326
Score = 38.1 bits (87), Expect = 0.004
Identities = 26/73 (35%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G G PG G PDGP G G G GA G GP G + G P P
Sbjct: 57 GKAGPPGPKGEPGKAG-PDGPDGKPGIDGLTGAKGEPGPMGIPGVKGQPGLPGPPGLPGP 115
Query: 67 GAASAQDGRCPCG 79
G A P G
Sbjct: 116 GFAGPPGPPGPVG 128
Score = 37.7 bits (86), Expect = 0.005
Identities = 23/54 (42%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG----GAPRGPHG 66
GP G P GP G G PG G G GP G A GP+G P GP G
Sbjct: 27 GPPGERGPPGPPGPPGVPGSDGIDGDNGP--PGKAGPPGPKGEPGKAGPDGPDG 78
Score = 37.4 bits (85), Expect = 0.007
Identities = 26/63 (41%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-APRG 63
+G G G G PG+P PG GPG AG G GP G G GP+G P G
Sbjct: 89 KGEPGPMGIPGVKGQPGLPGPPG--LPGPGFAGPPGPPGPVGLPGEIGIRGPKGDPGPDG 146
Query: 64 PHG 66
P G
Sbjct: 147 PSG 149
Score = 36.6 bits (83), Expect = 0.012
Identities = 28/69 (40%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG---- 58
G G G G PGIP GP G G G+ G+ G GPRG G A G +G
Sbjct: 400 GPQGRQGPKGEQGPPGIP-GPQGLPGVKGDKGSPGKTGPRGKVGDPGVAGLPGEKGEKGE 458
Query: 59 -GAPRGPHG 66
G P GP G
Sbjct: 459 SGEP-GPKG 466
Score = 36.6 bits (83), Expect = 0.012
Identities = 22/50 (44%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 5 GQGTGGSTGDADGPGGPGIP-------DGPGGNAGGPGEAGATGGRGPRG 47
G+G G G PG PG P DG G+ G PGEAG G GP G
Sbjct: 610 GRGHPGMPGPPGIPGLPGRPGQAINGKDGDRGSPGAPGEAGRPGLPGPVG 659
Score = 35.4 bits (80), Expect = 0.027
Identities = 24/56 (42%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG 58
G GS G DG GP GP G G PG+AG G G G GA GP G
Sbjct: 42 GVPGSDG-IDGDNGPPGKAGPPGPKGEPGKAGPDGPDGKPGIDGLTGAKGEPGPMG 96
Score = 35.4 bits (80), Expect = 0.027
Identities = 31/84 (36%), Positives = 34/84 (40%), Gaps = 19/84 (22%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGA---TGGRGPRGAGAARAS----GP 56
QG G GD PG GP G G AG PGE G +G GP+G R GP
Sbjct: 420 QGLPGVKGDKGSPGKTGPRGKVGDPGVAGLPGEKGEKGESGEPGPKGQQGVRGEPGYPGP 479
Query: 57 RGGA----------PRGPHGGAAS 70
G A P GP G A +
Sbjct: 480 SGDAGAPGVQGYPGPPGPRGLAGN 503
Score = 35.0 bits (79), Expect = 0.035
Identities = 23/67 (34%), Positives = 25/67 (37%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHGGAASAQDGRC 76
GP GP P G G G G G G GP G R G +G G A C
Sbjct: 119 GPPGPPGPVGLPGEIGIRGPKGDPGPDGPSGPPGPPGKPGRPGTIQGLEGSADFLCPTNC 178
Query: 77 PCGARRP 83
P G + P
Sbjct: 179 PPGMKGP 185
Score = 34.7 bits (78), Expect = 0.045
Identities = 26/80 (32%), Positives = 29/80 (36%), Gaps = 21/80 (26%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPG------------------EAGATGGRGPR 46
GT G GD PG G+P GP G G PG E G G GP+
Sbjct: 343 GTKGGPGDQGEPGPQGLPGFSGPPGKEGEPGPRGEIGPQGIMGQKGDQGERGPVGQPGPQ 402
Query: 47 GAGAARASGPRGGAPRGPHG 66
G + G P GP G
Sbjct: 403 GRQGPKGEQGPPGIP-GPQG 421
Score = 34.7 bits (78), Expect = 0.045
Identities = 27/75 (36%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 7 GTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRGPRGAGAARASGPRG--G 59
G G G PG G+P G GN G G+ G G G G G GP G G
Sbjct: 565 GYPGKQGPHGHPGPRGVPGIVGAVGQIGNTGPKGKRGEKGDPGEVGRGHPGMPGPPGIPG 624
Query: 60 APRGPHGGAASAQDG 74
P P G A + +DG
Sbjct: 625 LPGRP-GQAINGKDG 638
Score = 33.5 bits (75), Expect = 0.10
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 14 DADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRGG-APRGPHG 66
+A G G P GP G G PG+ G G GPRG G A G G P+G G
Sbjct: 547 EALGAVGMMGPPGPPGPPGYPGKQGPHGHPGPRGVPGIVGAVGQIGNTGPKGKRG 601
Score = 33.1 bits (74), Expect = 0.13
Identities = 26/71 (36%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGG 59
+G G TG G PGI DG G G G AG G G G AG G +GG
Sbjct: 288 RGPQGITGPKGATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGG 347
Query: 60 ----APRGPHG 66
GP G
Sbjct: 348 PGDQGEPGPQG 358
Score = 33.1 bits (74), Expect = 0.13
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 6 QGTGGSTGDADGPGGPGIP-----DGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG 58
QG G GD G G P GP G G PG G G G +G G+ +GPRG
Sbjct: 381 QGIMGQKGDQGERGPVGQPGPQGRQGPKGEQGPPGIPGPQGLPGVKGDKGSPGKTGPRG 439
Score = 30.8 bits (68), Expect = 0.66
Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPR---GAGA-ARASGPRGGA 60
GQ G GD PG PG G G PG G G P GA A A A G+
Sbjct: 630 GQAINGKDGDRGSPGAPG----EAGRPGLPGPVGLPGFCEPAACLGASAYASARLTEPGS 685
Query: 61 PRGP 64
+GP
Sbjct: 686 IKGP 689
Score = 30.0 bits (66), Expect = 1.1
Identities = 28/94 (29%), Positives = 31/94 (32%), Gaps = 33/94 (35%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG-------------------GNAGGPGEAGATGGRGPR 46
+G G G + PG PG P PG G G PG G G G R
Sbjct: 139 KGDPGPDGPSGPPGPPGKPGRPGTIQGLEGSADFLCPTNCPPGMKGPPGLQGVKGHAGKR 198
Query: 47 G-------------AGAARASGPRG-GAPRGPHG 66
G G ASG +G P GP G
Sbjct: 199 GILGDPGHQGKPGPKGDVGASGEQGIPGPPGPQG 232
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
+G G +G+ G G+ PG G G+AGA G +G G R G P P
Sbjct: 453 KGEKGESGEPGPKGQQGVRGEPG-YPGPSGDAGAPGVQGYPGPPGPRGLAGNRGVPGQPG 511
Query: 66 GGAASAQD 73
+D
Sbjct: 512 RQGVEGRD 519
Score = 29.3 bits (64), Expect = 1.9
Identities = 23/69 (33%), Positives = 24/69 (34%), Gaps = 11/69 (15%)
Query: 7 GTGGSTGDADGPG--GP-GI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARASG 55
G G GD PG GP GI P G G G PG G G G G +
Sbjct: 274 GRAGEKGDEGSPGIRGPQGITGPKGATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQ 333
Query: 56 PRGGAPRGP 64
G P P
Sbjct: 334 GLAGVPGQP 342
Score = 26.9 bits (58), Expect = 9.5
Identities = 21/65 (32%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
+G G G G G P G G G PGE G P G G G A G
Sbjct: 579 RGVPGIVGAVGQIGNTG-PKGKRGEKGDPGEVGRGHPGMPGPPGIPGLPGRPGQAINGKD 637
Query: 66 GGAAS 70
G S
Sbjct: 638 GDRGS 642
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 52.0 bits (123), Expect = 3e-07
Identities = 33/72 (45%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 7 GTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRGA-GAARASGPR 57
G GG G+ PG PG P GP G G PG AGA G +G +GA G A A GP
Sbjct: 1342 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1401
Query: 58 G-GAPRGPHGGA 68
G P GP G A
Sbjct: 1402 GKTGPVGPQGPA 1413
Score = 46.6 bits (109), Expect = 1e-05
Identities = 34/92 (36%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 7 GTGGSTGDAD--------GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPR 57
G G GD GP GP P+G G G PG G+ GG G +G G A GP
Sbjct: 1219 GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1278
Query: 58 G----GAPRGPHG--GAASAQDGRCPCGARRP 83
G G P+G G G A P GA+ P
Sbjct: 1279 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1310
Score = 46.2 bits (108), Expect = 2e-05
Identities = 34/71 (47%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 3 AEG-QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG----AGAARASG 55
AEG QG G+ G+A G PG P GP G AG PG G G GP G GAA G
Sbjct: 1382 AEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDG 1441
Query: 56 PRGGAPRGPHG 66
P G P GP G
Sbjct: 1442 PPG--PMGPPG 1450
Score = 44.7 bits (104), Expect = 4e-05
Identities = 31/69 (44%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAPRGP 64
G GS G A G PG P GP G G GE GA G +GP+G AG GP G P GP
Sbjct: 1072 GERGSAGTAGPIGLPGRP-GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGP 1130
Query: 65 HGGAASAQD 73
G D
Sbjct: 1131 AGSPGEDGD 1139
Score = 43.1 bits (100), Expect = 1e-04
Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 5 GQGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRGAGAARAS-G 55
G G G G+A PG PG G G AG PG AG G +GP G + + G
Sbjct: 1262 GVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPG 1321
Query: 56 PRG--GAPRGPHGGAASAQDG 74
P G G P P + QDG
Sbjct: 1322 PVGFPGDPGPPGEPGPAGQDG 1342
Score = 42.7 bits (99), Expect = 2e-04
Identities = 30/71 (42%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-----G 59
+G G+ G GG G P GP G G PGE G+ G GP G G GP G G
Sbjct: 1044 RGLPGAQGAPGLKGGEG-PQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKG 1102
Query: 60 AP--RGPHGGA 68
AP +GP G A
Sbjct: 1103 APGEKGPQGPA 1113
Score = 42.4 bits (98), Expect = 2e-04
Identities = 29/75 (38%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G TG GPGG P GP G G GE G G GP G + + GA P
Sbjct: 967 GFQGKTGPP-GPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGP 1025
Query: 67 GAASAQDGRCPCGAR 81
S +DG P G R
Sbjct: 1026 QGISGKDG--PAGLR 1038
Score = 42.0 bits (97), Expect = 3e-04
Identities = 35/85 (41%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG--GAP- 61
QG G TG G PG P GP G G PG AG G +G P G + GP G G P
Sbjct: 984 QGPTGETGPIGERGHPGPP-GPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPG 1042
Query: 62 -RGPHG--GAASAQDGRCPCGARRP 83
RG G GA + G P G P
Sbjct: 1043 ERGLPGAQGAPGLKGGEGPQGPPGP 1067
Score = 41.6 bits (96), Expect = 4e-04
Identities = 27/64 (42%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
+G G TG G GP GP G +GG G G G RGP+G G GP+G P
Sbjct: 891 RGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKG--PP 948
Query: 63 GPHG 66
GP G
Sbjct: 949 GPPG 952
Score = 41.6 bits (96), Expect = 4e-04
Identities = 28/63 (44%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
QG G GD G PG P G G G PGE G G GP G GPRG P+G
Sbjct: 1188 QGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPG--PPGPRG--PQG 1243
Query: 64 PHG 66
P+G
Sbjct: 1244 PNG 1246
Score = 40.8 bits (94), Expect = 6e-04
Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 16/78 (20%)
Query: 5 GQGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG 59
G G+ G+ G++ PG G P GP G G G GA GGRG G A+ G
Sbjct: 557 GPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDG 616
Query: 60 AP-----------RGPHG 66
P RGP G
Sbjct: 617 LPGLPGDKGHRGERGPQG 634
Score = 40.8 bits (94), Expect = 6e-04
Identities = 29/70 (41%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GAP 61
G G G PG GI DGP G G PGE G G +G G G GP G G+P
Sbjct: 1012 GAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSP 1071
Query: 62 RGPHGGAASA 71
G G A +A
Sbjct: 1072 -GERGSAGTA 1080
Score = 40.4 bits (93), Expect = 8e-04
Identities = 28/63 (44%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-APRG 63
QG G G GP GP P G G G PG AG G GP G G SG +G P G
Sbjct: 705 QGNPGPQG-LPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPG 763
Query: 64 PHG 66
P G
Sbjct: 764 PQG 766
Score = 40.0 bits (92), Expect = 0.001
Identities = 29/65 (44%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPRG-GAP 61
G GS GD G PG P G G G PG AG G GPRG G G RG P
Sbjct: 1147 GQKGSKGDKGENGPPG-PPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGP 1205
Query: 62 RGPHG 66
GP G
Sbjct: 1206 PGPIG 1210
Score = 40.0 bits (92), Expect = 0.001
Identities = 36/100 (36%), Positives = 41/100 (41%), Gaps = 24/100 (24%)
Query: 6 QGTGGSTGDADGPGGPGIP--DGPGGNAGG---PGEAGATGGRGPRG------------- 47
+G G G A PG G P DGP GN G PG+ G G GP G
Sbjct: 1293 KGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD 1352
Query: 48 AGAARASGPRGGA-PRGPHG-----GAASAQDGRCPCGAR 81
G GP G A P GP G GAA A+ + GA+
Sbjct: 1353 PGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAK 1392
Score = 40.0 bits (92), Expect = 0.001
Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
QG+ G+ GD GP GP P GP G G G G G GP G G + GP G
Sbjct: 1491 QGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSP-- 1548
Query: 63 GPHG 66
GP G
Sbjct: 1549 GPPG 1552
Score = 39.7 bits (91), Expect = 0.001
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GAPR 62
+G G+ G G GIP GP G G PG G G +GP+G G+ +G +G G P
Sbjct: 1485 RGLPGTQGSPGAKGDGGIP-GPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLP- 1542
Query: 63 GPHG 66
GP G
Sbjct: 1543 GPPG 1546
Score = 38.9 bits (89), Expect = 0.002
Identities = 29/63 (46%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG--GAP 61
G G GD G GP P GP G+ G GE G G RG P AG GPRG GAP
Sbjct: 616 GLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAP 675
Query: 62 RGP 64
P
Sbjct: 676 GQP 678
Score = 38.9 bits (89), Expect = 0.002
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGG------PGEAGATGGRGPRGAGAARASGP 56
A G+ GP G P GP G+ G PG G +GG GP G R GP
Sbjct: 875 ANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGER--GP 932
Query: 57 RGGAPRGPHG 66
+G P+GP G
Sbjct: 933 QG--PQGPVG 940
Score = 38.5 bits (88), Expect = 0.003
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 16/77 (20%)
Query: 6 QGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRG----AGAARA 53
QG GSTG PG G GP G G G G+ G RGP G G +
Sbjct: 861 QGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGG 920
Query: 54 SGPRG----GAPRGPHG 66
GP G P+GP G
Sbjct: 921 DGPPGPPGERGPQGPQG 937
Score = 38.5 bits (88), Expect = 0.003
Identities = 32/85 (37%), Positives = 36/85 (42%), Gaps = 17/85 (20%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------------GNAGGPGEAGATGGRGPRG-AGAA 51
G G +G+A PG PG PG G AG G G TG GP+G AG
Sbjct: 1357 GPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKP 1416
Query: 52 RASGPRG-GAPRGPHG-GAASAQDG 74
G RG P G G A+ QDG
Sbjct: 1417 GPEGLRGIPGPVGEQGLPGAAGQDG 1441
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/65 (43%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG-GAP 61
+G G G PG G+ DG G G PGEAG G GPRG GA G G P
Sbjct: 627 RGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGP 686
Query: 62 RGPHG 66
GP G
Sbjct: 687 PGPKG 691
Score = 38.1 bits (87), Expect = 0.004
Identities = 30/68 (44%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 6 QGTGGSTGDADGPGGPGIPDG-PG--GNAGGPGEAGATGGRGPRG----AGAARASGPRG 58
QG G G +GP GP P G PG G+AG G G G GP+G AG A G +G
Sbjct: 1050 QGAPGLKG-GEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKG 1108
Query: 59 GAPRGPHG 66
P+GP G
Sbjct: 1109 --PQGPAG 1114
Score = 37.7 bits (86), Expect = 0.005
Identities = 26/62 (41%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGP 64
QG G G GP GP P G G G PG+ G TG +G G G GP+G P G
Sbjct: 933 QGPQGPVG-FPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQG--PTGE 989
Query: 65 HG 66
G
Sbjct: 990 TG 991
Score = 37.0 bits (84), Expect = 0.009
Identities = 27/63 (42%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 7 GTGGSTGDA--DGPGGP-GIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
G G G A DG GP G+P GP G AG PGE G G G G ++ G P G
Sbjct: 1105 GEKGPQGPAGRDGVQGPVGLP-GPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPP-G 1162
Query: 64 PHG 66
P G
Sbjct: 1163 PPG 1165
Score = 36.6 bits (83), Expect = 0.012
Identities = 27/65 (41%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-GAPRGPHG-----GAAS 70
GP GP G G GGPG +GA G G G GPRG P GP G G
Sbjct: 541 GPPGPMGLTGRPGPVGGPGSSGAKGESGDPG-----PQGPRGVQGPPGPTGKPGKRGRPG 595
Query: 71 AQDGR 75
A GR
Sbjct: 596 ADGGR 600
Score = 36.6 bits (83), Expect = 0.012
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGGAP 61
QG G G PG G+P GP G G PGE +GP+G AG A GP G
Sbjct: 696 QGEPGPPGQQGNPGPQGLP-GPQGPIGPPGE------KGPQGKPGLAGLPGADGPPGHPG 748
Query: 62 RGPHGGAASA 71
+ G A
Sbjct: 749 KEGQSGEKGA 758
Score = 36.6 bits (83), Expect = 0.012
Identities = 28/69 (40%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG----- 59
QG G+ G A G G PG P G G G G+ GA G GP G G GP G
Sbjct: 1167 QGPVGAPGIAGGDGEPG-PRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENG 1225
Query: 60 --APRGPHG 66
P GP G
Sbjct: 1226 DVGPMGPPG 1234
Score = 36.2 bits (82), Expect = 0.016
Identities = 29/75 (38%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GAPR 62
QG G+ G DGP GP P G G G PG G G G G G G +G G P
Sbjct: 1431 QGLPGAAGQ-DGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLP- 1488
Query: 63 GPHGGAASAQDGRCP 77
G G + DG P
Sbjct: 1489 GTQGSPGAKGDGGIP 1503
Score = 35.8 bits (81), Expect = 0.020
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 6 QGTGGSTGD-----ADGPGGPGIPDGPGGNAGGPGEAGATGGR---GPRG-AGAARASGP 56
+GT G+ G DGP GP GP G G PG+ G G + GP+G G GP
Sbjct: 669 RGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGP 728
Query: 57 RG 58
+G
Sbjct: 729 QG 730
Score = 35.8 bits (81), Expect = 0.020
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRG 58
+G G G GP G P+GP G AG G+ G +G G +G G GP+G
Sbjct: 807 KGDRGEVGQI-GPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKG 865
Query: 59 GAPRGPHGGAASAQDGRCPCGARRP 83
GA + R G P
Sbjct: 866 STGFPGFPGANGEKGARGVAGKPGP 890
Score = 35.8 bits (81), Expect = 0.020
Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 6 QGTGGSTGDADGPG--GPGIPD------GPGGNAGGPGEAGATGGRGPRG-AGAARASGP 56
+GT G G PG GP P GP G G PG+ G G G RG G +GP
Sbjct: 915 KGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGP 974
Query: 57 RG-GAPRGPHG 66
G G GP G
Sbjct: 975 PGPGGVVGPQG 985
Score = 34.7 bits (78), Expect = 0.045
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG-GAP 61
G G G PG PG P G AG G G G GP+G G GP+G P
Sbjct: 661 GPRGLLGPRGTPGAPGQP----GMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 716
Query: 62 RGPHG 66
+GP G
Sbjct: 717 QGPIG 721
Score = 34.3 bits (77), Expect = 0.059
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGP 56
+G GS G+ PG G+ P G G G G G G G +G AG GP
Sbjct: 1455 KGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGP 1514
Query: 57 RG-GAPRGPHGGAAS 70
G P+GP G S
Sbjct: 1515 PGLPGPQGPKGNKGS 1529
Score = 33.9 bits (76), Expect = 0.077
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 19/88 (21%)
Query: 4 EGQ-GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG--------------- 47
EGQ G G+ G GP GP GP G G G G G +G +G
Sbjct: 750 EGQSGEKGALGPP-GPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKG 808
Query: 48 -AGAARASGPRG-GAPRGPHGGAASAQD 73
G GPRG P GP G A D
Sbjct: 809 DRGEVGQIGPRGEDGPEGPKGRAGPTGD 836
Score = 33.1 bits (74), Expect = 0.13
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG----AGAARASGPRG 58
+G G G A PG G P PG G +G G G G +GP G G A G RG
Sbjct: 726 KGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRG 784
Score = 32.7 bits (73), Expect = 0.17
Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRG-PRGAGAARASGPRGGAPR 62
QG G TG G PG G G G G G+ G G G P G GP+G P
Sbjct: 579 QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQG--PP 636
Query: 63 GPHG 66
GP G
Sbjct: 637 GPPG 640
Score = 32.7 bits (73), Expect = 0.17
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA-PRGP 64
+G GS G+ G PG G+ G G+ G G GPRG GP+G A P G
Sbjct: 783 RGLKGSKGEKGEDGFPGFK----GDMGLKGDRGEVGQIGPRGEDG--PEGPKGRAGPTGD 836
Query: 65 HGGAASA 71
G + A
Sbjct: 837 PGPSGQA 843
Score = 32.0 bits (71), Expect = 0.29
Identities = 23/63 (36%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 5 GQGTGGSTGDADGPG--GPGI----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
G G G G P PG+ P GP G AG G G G GP G R R
Sbjct: 430 GHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRP 489
Query: 59 GAP 61
G P
Sbjct: 490 GLP 492
Score = 32.0 bits (71), Expect = 0.29
Identities = 26/78 (33%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 1 MQAEGQ-GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPR 57
M EG G G G PG GP P G G+ G PG G G G G P
Sbjct: 450 MLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPF 509
Query: 58 GGAPRGPHGGAASAQDGR 75
G G SAQ+ +
Sbjct: 510 RYGGDGSKGPTISAQEAQ 527
Score = 32.0 bits (71), Expect = 0.29
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G G + G G P GP G G PG G G G RG ++ G P
Sbjct: 745 GHPGKEGQSGEKGALG-PPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP 798
Score = 27.7 bits (60), Expect = 5.6
Identities = 27/70 (38%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGE------AGATGGRGPRG-AGAARASGPRG 58
+G G G PG G P G G G PG AG G GP+G G GP G
Sbjct: 645 RGEDGEIGPRGLPGEAG-PRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPG 703
Query: 59 --GAPRGPHG 66
G P GP G
Sbjct: 704 QQGNP-GPQG 712
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 52.0 bits (123), Expect = 3e-07
Identities = 33/72 (45%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 7 GTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRGA-GAARASGPR 57
G GG G+ PG PG P GP G G PG AGA G +G +GA G A A GP
Sbjct: 1291 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1350
Query: 58 G-GAPRGPHGGA 68
G P GP G A
Sbjct: 1351 GKTGPVGPQGPA 1362
Score = 46.6 bits (109), Expect = 1e-05
Identities = 34/92 (36%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 7 GTGGSTGDAD--------GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPR 57
G G GD GP GP P+G G G PG G+ GG G +G G A GP
Sbjct: 1168 GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1227
Query: 58 G----GAPRGPHG--GAASAQDGRCPCGARRP 83
G G P+G G G A P GA+ P
Sbjct: 1228 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1259
Score = 46.2 bits (108), Expect = 2e-05
Identities = 34/71 (47%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 3 AEG-QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG----AGAARASG 55
AEG QG G+ G+A G PG P GP G AG PG G G GP G GAA G
Sbjct: 1331 AEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDG 1390
Query: 56 PRGGAPRGPHG 66
P G P GP G
Sbjct: 1391 PPG--PMGPPG 1399
Score = 44.7 bits (104), Expect = 4e-05
Identities = 31/69 (44%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAPRGP 64
G GS G A G PG P GP G G GE GA G +GP+G AG GP G P GP
Sbjct: 1021 GERGSAGTAGPIGLPGRP-GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGP 1079
Query: 65 HGGAASAQD 73
G D
Sbjct: 1080 AGSPGEDGD 1088
Score = 43.1 bits (100), Expect = 1e-04
Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 5 GQGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRGAGAARAS-G 55
G G G G+A PG PG G G AG PG AG G +GP G + + G
Sbjct: 1211 GVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPG 1270
Query: 56 PRG--GAPRGPHGGAASAQDG 74
P G G P P + QDG
Sbjct: 1271 PVGFPGDPGPPGEPGPAGQDG 1291
Score = 42.7 bits (99), Expect = 2e-04
Identities = 30/71 (42%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-----G 59
+G G+ G GG G P GP G G PGE G+ G GP G G GP G G
Sbjct: 993 RGLPGAQGAPGLKGGEG-PQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKG 1051
Query: 60 AP--RGPHGGA 68
AP +GP G A
Sbjct: 1052 APGEKGPQGPA 1062
Score = 42.4 bits (98), Expect = 2e-04
Identities = 29/75 (38%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G TG GPGG P GP G G GE G G GP G + + GA P
Sbjct: 916 GFQGKTGPP-GPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGP 974
Query: 67 GAASAQDGRCPCGAR 81
S +DG P G R
Sbjct: 975 QGISGKDG--PAGLR 987
Score = 42.0 bits (97), Expect = 3e-04
Identities = 35/85 (41%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG--GAP- 61
QG G TG G PG P GP G G PG AG G +G P G + GP G G P
Sbjct: 933 QGPTGETGPIGERGHPGPP-GPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPG 991
Query: 62 -RGPHG--GAASAQDGRCPCGARRP 83
RG G GA + G P G P
Sbjct: 992 ERGLPGAQGAPGLKGGEGPQGPPGP 1016
Score = 41.6 bits (96), Expect = 4e-04
Identities = 27/64 (42%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
+G G TG G GP GP G +GG G G G RGP+G G GP+G P
Sbjct: 840 RGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKG--PP 897
Query: 63 GPHG 66
GP G
Sbjct: 898 GPPG 901
Score = 41.6 bits (96), Expect = 4e-04
Identities = 28/63 (44%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
QG G GD G PG P G G G PGE G G GP G GPRG P+G
Sbjct: 1137 QGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPG--PPGPRG--PQG 1192
Query: 64 PHG 66
P+G
Sbjct: 1193 PNG 1195
Score = 40.8 bits (94), Expect = 6e-04
Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 16/78 (20%)
Query: 5 GQGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG 59
G G+ G+ G++ PG G P GP G G G GA GGRG G A+ G
Sbjct: 506 GPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDG 565
Query: 60 AP-----------RGPHG 66
P RGP G
Sbjct: 566 LPGLPGDKGHRGERGPQG 583
Score = 40.8 bits (94), Expect = 6e-04
Identities = 29/70 (41%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GAP 61
G G G PG GI DGP G G PGE G G +G G G GP G G+P
Sbjct: 961 GAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSP 1020
Query: 62 RGPHGGAASA 71
G G A +A
Sbjct: 1021 -GERGSAGTA 1029
Score = 40.4 bits (93), Expect = 8e-04
Identities = 28/63 (44%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-APRG 63
QG G G GP GP P G G G PG AG G GP G G SG +G P G
Sbjct: 654 QGNPGPQG-LPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPG 712
Query: 64 PHG 66
P G
Sbjct: 713 PQG 715
Score = 40.0 bits (92), Expect = 0.001
Identities = 29/65 (44%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPRG-GAP 61
G GS GD G PG P G G G PG AG G GPRG G G RG P
Sbjct: 1096 GQKGSKGDKGENGPPG-PPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGP 1154
Query: 62 RGPHG 66
GP G
Sbjct: 1155 PGPIG 1159
Score = 40.0 bits (92), Expect = 0.001
Identities = 36/100 (36%), Positives = 41/100 (41%), Gaps = 24/100 (24%)
Query: 6 QGTGGSTGDADGPGGPGIP--DGPGGNAGG---PGEAGATGGRGPRG------------- 47
+G G G A PG G P DGP GN G PG+ G G GP G
Sbjct: 1242 KGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD 1301
Query: 48 AGAARASGPRGGA-PRGPHG-----GAASAQDGRCPCGAR 81
G GP G A P GP G GAA A+ + GA+
Sbjct: 1302 PGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAK 1341
Score = 40.0 bits (92), Expect = 0.001
Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
QG+ G+ GD GP GP P GP G G G G G GP G G + GP G
Sbjct: 1440 QGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSP-- 1497
Query: 63 GPHG 66
GP G
Sbjct: 1498 GPPG 1501
Score = 39.7 bits (91), Expect = 0.001
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GAPR 62
+G G+ G G GIP GP G G PG G G +GP+G G+ +G +G G P
Sbjct: 1434 RGLPGTQGSPGAKGDGGIP-GPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLP- 1491
Query: 63 GPHG 66
GP G
Sbjct: 1492 GPPG 1495
Score = 38.9 bits (89), Expect = 0.002
Identities = 29/63 (46%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG--GAP 61
G G GD G GP P GP G+ G GE G G RG P AG GPRG GAP
Sbjct: 565 GLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAP 624
Query: 62 RGP 64
P
Sbjct: 625 GQP 627
Score = 38.9 bits (89), Expect = 0.002
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGG------PGEAGATGGRGPRGAGAARASGP 56
A G+ GP G P GP G+ G PG G +GG GP G R GP
Sbjct: 824 ANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGER--GP 881
Query: 57 RGGAPRGPHG 66
+G P+GP G
Sbjct: 882 QG--PQGPVG 889
Score = 38.5 bits (88), Expect = 0.003
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 16/77 (20%)
Query: 6 QGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRG----AGAARA 53
QG GSTG PG G GP G G G G+ G RGP G G +
Sbjct: 810 QGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGG 869
Query: 54 SGPRG----GAPRGPHG 66
GP G P+GP G
Sbjct: 870 DGPPGPPGERGPQGPQG 886
Score = 38.5 bits (88), Expect = 0.003
Identities = 32/85 (37%), Positives = 36/85 (42%), Gaps = 17/85 (20%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------------GNAGGPGEAGATGGRGPRG-AGAA 51
G G +G+A PG PG PG G AG G G TG GP+G AG
Sbjct: 1306 GPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKP 1365
Query: 52 RASGPRG-GAPRGPHG-GAASAQDG 74
G RG P G G A+ QDG
Sbjct: 1366 GPEGLRGIPGPVGEQGLPGAAGQDG 1390
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/65 (43%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG-GAP 61
+G G G PG G+ DG G G PGEAG G GPRG GA G G P
Sbjct: 576 RGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGP 635
Query: 62 RGPHG 66
GP G
Sbjct: 636 PGPKG 640
Score = 38.1 bits (87), Expect = 0.004
Identities = 30/68 (44%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 6 QGTGGSTGDADGPGGPGIPDG-PG--GNAGGPGEAGATGGRGPRG----AGAARASGPRG 58
QG G G +GP GP P G PG G+AG G G G GP+G AG A G +G
Sbjct: 999 QGAPGLKG-GEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKG 1057
Query: 59 GAPRGPHG 66
P+GP G
Sbjct: 1058 --PQGPAG 1063
Score = 37.7 bits (86), Expect = 0.005
Identities = 26/62 (41%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGP 64
QG G G GP GP P G G G PG+ G TG +G G G GP+G P G
Sbjct: 882 QGPQGPVG-FPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQG--PTGE 938
Query: 65 HG 66
G
Sbjct: 939 TG 940
Score = 37.0 bits (84), Expect = 0.009
Identities = 27/63 (42%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 7 GTGGSTGDA--DGPGGP-GIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
G G G A DG GP G+P GP G AG PGE G G G G ++ G P G
Sbjct: 1054 GEKGPQGPAGRDGVQGPVGLP-GPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPP-G 1111
Query: 64 PHG 66
P G
Sbjct: 1112 PPG 1114
Score = 36.6 bits (83), Expect = 0.012
Identities = 27/65 (41%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-GAPRGPHG-----GAAS 70
GP GP G G GGPG +GA G G G GPRG P GP G G
Sbjct: 490 GPPGPMGLTGRPGPVGGPGSSGAKGESGDPG-----PQGPRGVQGPPGPTGKPGKRGRPG 544
Query: 71 AQDGR 75
A GR
Sbjct: 545 ADGGR 549
Score = 36.6 bits (83), Expect = 0.012
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGGAP 61
QG G G PG G+P GP G G PGE +GP+G AG A GP G
Sbjct: 645 QGEPGPPGQQGNPGPQGLP-GPQGPIGPPGE------KGPQGKPGLAGLPGADGPPGHPG 697
Query: 62 RGPHGGAASA 71
+ G A
Sbjct: 698 KEGQSGEKGA 707
Score = 36.6 bits (83), Expect = 0.012
Identities = 28/69 (40%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG----- 59
QG G+ G A G G PG P G G G G+ GA G GP G G GP G
Sbjct: 1116 QGPVGAPGIAGGDGEPG-PRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENG 1174
Query: 60 --APRGPHG 66
P GP G
Sbjct: 1175 DVGPMGPPG 1183
Score = 36.2 bits (82), Expect = 0.016
Identities = 29/75 (38%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GAPR 62
QG G+ G DGP GP P G G G PG G G G G G G +G G P
Sbjct: 1380 QGLPGAAGQ-DGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLP- 1437
Query: 63 GPHGGAASAQDGRCP 77
G G + DG P
Sbjct: 1438 GTQGSPGAKGDGGIP 1452
Score = 35.8 bits (81), Expect = 0.020
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 6 QGTGGSTGD-----ADGPGGPGIPDGPGGNAGGPGEAGATGGR---GPRG-AGAARASGP 56
+GT G+ G DGP GP GP G G PG+ G G + GP+G G GP
Sbjct: 618 RGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGP 677
Query: 57 RG 58
+G
Sbjct: 678 QG 679
Score = 35.8 bits (81), Expect = 0.020
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRG 58
+G G G GP G P+GP G AG G+ G +G G +G G GP+G
Sbjct: 756 KGDRGEVGQI-GPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKG 814
Query: 59 GAPRGPHGGAASAQDGRCPCGARRP 83
GA + R G P
Sbjct: 815 STGFPGFPGANGEKGARGVAGKPGP 839
Score = 35.8 bits (81), Expect = 0.020
Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 6 QGTGGSTGDADGPG--GPGIPD------GPGGNAGGPGEAGATGGRGPRG-AGAARASGP 56
+GT G G PG GP P GP G G PG+ G G G RG G +GP
Sbjct: 864 KGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGP 923
Query: 57 RG-GAPRGPHG 66
G G GP G
Sbjct: 924 PGPGGVVGPQG 934
Score = 34.7 bits (78), Expect = 0.045
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG-GAP 61
G G G PG PG P G AG G G G GP+G G GP+G P
Sbjct: 610 GPRGLLGPRGTPGAPGQP----GMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 665
Query: 62 RGPHG 66
+GP G
Sbjct: 666 QGPIG 670
Score = 34.3 bits (77), Expect = 0.059
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGP 56
+G GS G+ PG G+ P G G G G G G G +G AG GP
Sbjct: 1404 KGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGP 1463
Query: 57 RG-GAPRGPHGGAAS 70
G P+GP G S
Sbjct: 1464 PGLPGPQGPKGNKGS 1478
Score = 33.9 bits (76), Expect = 0.077
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 19/88 (21%)
Query: 4 EGQ-GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG--------------- 47
EGQ G G+ G GP GP GP G G G G G +G +G
Sbjct: 699 EGQSGEKGALGPP-GPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKG 757
Query: 48 -AGAARASGPRG-GAPRGPHGGAASAQD 73
G GPRG P GP G A D
Sbjct: 758 DRGEVGQIGPRGEDGPEGPKGRAGPTGD 785
Score = 33.1 bits (74), Expect = 0.13
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG----AGAARASGPRG 58
+G G G A PG G P PG G +G G G G +GP G G A G RG
Sbjct: 675 KGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRG 733
Score = 32.7 bits (73), Expect = 0.17
Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRG-PRGAGAARASGPRGGAPR 62
QG G TG G PG G G G G G+ G G G P G GP+G P
Sbjct: 528 QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQG--PP 585
Query: 63 GPHG 66
GP G
Sbjct: 586 GPPG 589
Score = 32.7 bits (73), Expect = 0.17
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA-PRGP 64
+G GS G+ G PG G+ G G+ G G GPRG GP+G A P G
Sbjct: 732 RGLKGSKGEKGEDGFPGFK----GDMGLKGDRGEVGQIGPRGEDG--PEGPKGRAGPTGD 785
Query: 65 HGGAASA 71
G + A
Sbjct: 786 PGPSGQA 792
Score = 32.0 bits (71), Expect = 0.29
Identities = 23/63 (36%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 5 GQGTGGSTGDADGPG--GPGI----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
G G G G P PG+ P GP G AG G G G GP G R R
Sbjct: 379 GHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRP 438
Query: 59 GAP 61
G P
Sbjct: 439 GLP 441
Score = 32.0 bits (71), Expect = 0.29
Identities = 26/78 (33%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 1 MQAEGQ-GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPR 57
M EG G G G PG GP P G G+ G PG G G G G P
Sbjct: 399 MLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPF 458
Query: 58 GGAPRGPHGGAASAQDGR 75
G G SAQ+ +
Sbjct: 459 RYGGDGSKGPTISAQEAQ 476
Score = 32.0 bits (71), Expect = 0.29
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G G + G G P GP G G PG G G G RG ++ G P
Sbjct: 694 GHPGKEGQSGEKGALG-PPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP 747
Score = 27.7 bits (60), Expect = 5.6
Identities = 27/70 (38%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGE------AGATGGRGPRG-AGAARASGPRG 58
+G G G PG G P G G G PG AG G GP+G G GP G
Sbjct: 594 RGEDGEIGPRGLPGEAG-PRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPG 652
Query: 59 --GAPRGPHG 66
G P GP G
Sbjct: 653 QQGNP-GPQG 661
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 52.0 bits (123), Expect = 3e-07
Identities = 33/72 (45%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 7 GTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRGA-GAARASGPR 57
G GG G+ PG PG P GP G G PG AGA G +G +GA G A A GP
Sbjct: 1330 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1389
Query: 58 G-GAPRGPHGGA 68
G P GP G A
Sbjct: 1390 GKTGPVGPQGPA 1401
Score = 46.6 bits (109), Expect = 1e-05
Identities = 34/92 (36%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 7 GTGGSTGDAD--------GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPR 57
G G GD GP GP P+G G G PG G+ GG G +G G A GP
Sbjct: 1207 GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1266
Query: 58 G----GAPRGPHG--GAASAQDGRCPCGARRP 83
G G P+G G G A P GA+ P
Sbjct: 1267 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP 1298
Score = 46.2 bits (108), Expect = 2e-05
Identities = 34/71 (47%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 3 AEG-QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG----AGAARASG 55
AEG QG G+ G+A G PG P GP G AG PG G G GP G GAA G
Sbjct: 1370 AEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDG 1429
Query: 56 PRGGAPRGPHG 66
P G P GP G
Sbjct: 1430 PPG--PMGPPG 1438
Score = 44.7 bits (104), Expect = 4e-05
Identities = 31/69 (44%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAPRGP 64
G GS G A G PG P GP G G GE GA G +GP+G AG GP G P GP
Sbjct: 1060 GERGSAGTAGPIGLPGRP-GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGP 1118
Query: 65 HGGAASAQD 73
G D
Sbjct: 1119 AGSPGEDGD 1127
Score = 43.1 bits (100), Expect = 1e-04
Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 5 GQGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRGAGAARAS-G 55
G G G G+A PG PG G G AG PG AG G +GP G + + G
Sbjct: 1250 GVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPG 1309
Query: 56 PRG--GAPRGPHGGAASAQDG 74
P G G P P + QDG
Sbjct: 1310 PVGFPGDPGPPGEPGPAGQDG 1330
Score = 42.7 bits (99), Expect = 2e-04
Identities = 30/71 (42%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-----G 59
+G G+ G GG G P GP G G PGE G+ G GP G G GP G G
Sbjct: 1032 RGLPGAQGAPGLKGGEG-PQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKG 1090
Query: 60 AP--RGPHGGA 68
AP +GP G A
Sbjct: 1091 APGEKGPQGPA 1101
Score = 42.4 bits (98), Expect = 2e-04
Identities = 29/75 (38%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G TG GPGG P GP G G GE G G GP G + + GA P
Sbjct: 955 GFQGKTGPP-GPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGP 1013
Query: 67 GAASAQDGRCPCGAR 81
S +DG P G R
Sbjct: 1014 QGISGKDG--PAGLR 1026
Score = 42.0 bits (97), Expect = 3e-04
Identities = 35/85 (41%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG--GAP- 61
QG G TG G PG P GP G G PG AG G +G P G + GP G G P
Sbjct: 972 QGPTGETGPIGERGHPGPP-GPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPG 1030
Query: 62 -RGPHG--GAASAQDGRCPCGARRP 83
RG G GA + G P G P
Sbjct: 1031 ERGLPGAQGAPGLKGGEGPQGPPGP 1055
Score = 41.6 bits (96), Expect = 4e-04
Identities = 27/64 (42%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
+G G TG G GP GP G +GG G G G RGP+G G GP+G P
Sbjct: 879 RGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKG--PP 936
Query: 63 GPHG 66
GP G
Sbjct: 937 GPPG 940
Score = 41.6 bits (96), Expect = 4e-04
Identities = 28/63 (44%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
QG G GD G PG P G G G PGE G G GP G GPRG P+G
Sbjct: 1176 QGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPG--PPGPRG--PQG 1231
Query: 64 PHG 66
P+G
Sbjct: 1232 PNG 1234
Score = 40.8 bits (94), Expect = 6e-04
Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 16/78 (20%)
Query: 5 GQGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG 59
G G+ G+ G++ PG G P GP G G G GA GGRG G A+ G
Sbjct: 545 GPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDG 604
Query: 60 AP-----------RGPHG 66
P RGP G
Sbjct: 605 LPGLPGDKGHRGERGPQG 622
Score = 40.8 bits (94), Expect = 6e-04
Identities = 29/70 (41%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GAP 61
G G G PG GI DGP G G PGE G G +G G G GP G G+P
Sbjct: 1000 GAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSP 1059
Query: 62 RGPHGGAASA 71
G G A +A
Sbjct: 1060 -GERGSAGTA 1068
Score = 40.4 bits (93), Expect = 8e-04
Identities = 28/63 (44%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-APRG 63
QG G G GP GP P G G G PG AG G GP G G SG +G P G
Sbjct: 693 QGNPGPQG-LPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPG 751
Query: 64 PHG 66
P G
Sbjct: 752 PQG 754
Score = 40.0 bits (92), Expect = 0.001
Identities = 29/65 (44%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPRG-GAP 61
G GS GD G PG P G G G PG AG G GPRG G G RG P
Sbjct: 1135 GQKGSKGDKGENGPPG-PPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGP 1193
Query: 62 RGPHG 66
GP G
Sbjct: 1194 PGPIG 1198
Score = 40.0 bits (92), Expect = 0.001
Identities = 36/100 (36%), Positives = 41/100 (41%), Gaps = 24/100 (24%)
Query: 6 QGTGGSTGDADGPGGPGIP--DGPGGNAGG---PGEAGATGGRGPRG------------- 47
+G G G A PG G P DGP GN G PG+ G G GP G
Sbjct: 1281 KGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD 1340
Query: 48 AGAARASGPRGGA-PRGPHG-----GAASAQDGRCPCGAR 81
G GP G A P GP G GAA A+ + GA+
Sbjct: 1341 PGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAK 1380
Score = 40.0 bits (92), Expect = 0.001
Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
QG+ G+ GD GP GP P GP G G G G G GP G G + GP G
Sbjct: 1479 QGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSP-- 1536
Query: 63 GPHG 66
GP G
Sbjct: 1537 GPPG 1540
Score = 39.7 bits (91), Expect = 0.001
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GAPR 62
+G G+ G G GIP GP G G PG G G +GP+G G+ +G +G G P
Sbjct: 1473 RGLPGTQGSPGAKGDGGIP-GPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLP- 1530
Query: 63 GPHG 66
GP G
Sbjct: 1531 GPPG 1534
Score = 38.9 bits (89), Expect = 0.002
Identities = 29/63 (46%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG--GAP 61
G G GD G GP P GP G+ G GE G G RG P AG GPRG GAP
Sbjct: 604 GLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAP 663
Query: 62 RGP 64
P
Sbjct: 664 GQP 666
Score = 38.9 bits (89), Expect = 0.002
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGG------PGEAGATGGRGPRGAGAARASGP 56
A G+ GP G P GP G+ G PG G +GG GP G R GP
Sbjct: 863 ANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGER--GP 920
Query: 57 RGGAPRGPHG 66
+G P+GP G
Sbjct: 921 QG--PQGPVG 928
Score = 38.5 bits (88), Expect = 0.003
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 16/77 (20%)
Query: 6 QGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRGPRG----AGAARA 53
QG GSTG PG G GP G G G G+ G RGP G G +
Sbjct: 849 QGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGG 908
Query: 54 SGPRG----GAPRGPHG 66
GP G P+GP G
Sbjct: 909 DGPPGPPGERGPQGPQG 925
Score = 38.5 bits (88), Expect = 0.003
Identities = 32/85 (37%), Positives = 36/85 (42%), Gaps = 17/85 (20%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------------GNAGGPGEAGATGGRGPRG-AGAA 51
G G +G+A PG PG PG G AG G G TG GP+G AG
Sbjct: 1345 GPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKP 1404
Query: 52 RASGPRG-GAPRGPHG-GAASAQDG 74
G RG P G G A+ QDG
Sbjct: 1405 GPEGLRGIPGPVGEQGLPGAAGQDG 1429
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/65 (43%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG-GAP 61
+G G G PG G+ DG G G PGEAG G GPRG GA G G P
Sbjct: 615 RGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGP 674
Query: 62 RGPHG 66
GP G
Sbjct: 675 PGPKG 679
Score = 38.1 bits (87), Expect = 0.004
Identities = 30/68 (44%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 6 QGTGGSTGDADGPGGPGIPDG-PG--GNAGGPGEAGATGGRGPRG----AGAARASGPRG 58
QG G G +GP GP P G PG G+AG G G G GP+G AG A G +G
Sbjct: 1038 QGAPGLKG-GEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKG 1096
Query: 59 GAPRGPHG 66
P+GP G
Sbjct: 1097 --PQGPAG 1102
Score = 37.7 bits (86), Expect = 0.005
Identities = 26/62 (41%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGP 64
QG G G GP GP P G G G PG+ G TG +G G G GP+G P G
Sbjct: 921 QGPQGPVG-FPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQG--PTGE 977
Query: 65 HG 66
G
Sbjct: 978 TG 979
Score = 37.0 bits (84), Expect = 0.009
Identities = 27/63 (42%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 7 GTGGSTGDA--DGPGGP-GIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
G G G A DG GP G+P GP G AG PGE G G G G ++ G P G
Sbjct: 1093 GEKGPQGPAGRDGVQGPVGLP-GPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPP-G 1150
Query: 64 PHG 66
P G
Sbjct: 1151 PPG 1153
Score = 36.6 bits (83), Expect = 0.012
Identities = 27/65 (41%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-GAPRGPHG-----GAAS 70
GP GP G G GGPG +GA G G G GPRG P GP G G
Sbjct: 529 GPPGPMGLTGRPGPVGGPGSSGAKGESGDPG-----PQGPRGVQGPPGPTGKPGKRGRPG 583
Query: 71 AQDGR 75
A GR
Sbjct: 584 ADGGR 588
Score = 36.6 bits (83), Expect = 0.012
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGGAP 61
QG G G PG G+P GP G G PGE +GP+G AG A GP G
Sbjct: 684 QGEPGPPGQQGNPGPQGLP-GPQGPIGPPGE------KGPQGKPGLAGLPGADGPPGHPG 736
Query: 62 RGPHGGAASA 71
+ G A
Sbjct: 737 KEGQSGEKGA 746
Score = 36.6 bits (83), Expect = 0.012
Identities = 28/69 (40%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG----- 59
QG G+ G A G G PG P G G G G+ GA G GP G G GP G
Sbjct: 1155 QGPVGAPGIAGGDGEPG-PRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENG 1213
Query: 60 --APRGPHG 66
P GP G
Sbjct: 1214 DVGPMGPPG 1222
Score = 36.2 bits (82), Expect = 0.016
Identities = 29/75 (38%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GAPR 62
QG G+ G DGP GP P G G G PG G G G G G G +G G P
Sbjct: 1419 QGLPGAAGQ-DGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLP- 1476
Query: 63 GPHGGAASAQDGRCP 77
G G + DG P
Sbjct: 1477 GTQGSPGAKGDGGIP 1491
Score = 35.8 bits (81), Expect = 0.020
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 6 QGTGGSTGD-----ADGPGGPGIPDGPGGNAGGPGEAGATGGR---GPRG-AGAARASGP 56
+GT G+ G DGP GP GP G G PG+ G G + GP+G G GP
Sbjct: 657 RGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGP 716
Query: 57 RG 58
+G
Sbjct: 717 QG 718
Score = 35.8 bits (81), Expect = 0.020
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRG 58
+G G G GP G P+GP G AG G+ G +G G +G G GP+G
Sbjct: 795 KGDRGEVGQI-GPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKG 853
Query: 59 GAPRGPHGGAASAQDGRCPCGARRP 83
GA + R G P
Sbjct: 854 STGFPGFPGANGEKGARGVAGKPGP 878
Score = 35.8 bits (81), Expect = 0.020
Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 6 QGTGGSTGDADGPG--GPGIPD------GPGGNAGGPGEAGATGGRGPRG-AGAARASGP 56
+GT G G PG GP P GP G G PG+ G G G RG G +GP
Sbjct: 903 KGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGP 962
Query: 57 RG-GAPRGPHG 66
G G GP G
Sbjct: 963 PGPGGVVGPQG 973
Score = 34.7 bits (78), Expect = 0.045
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG-GAP 61
G G G PG PG P G AG G G G GP+G G GP+G P
Sbjct: 649 GPRGLLGPRGTPGAPGQP----GMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 704
Query: 62 RGPHG 66
+GP G
Sbjct: 705 QGPIG 709
Score = 34.3 bits (77), Expect = 0.059
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGP 56
+G GS G+ PG G+ P G G G G G G G +G AG GP
Sbjct: 1443 KGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGP 1502
Query: 57 RG-GAPRGPHGGAAS 70
G P+GP G S
Sbjct: 1503 PGLPGPQGPKGNKGS 1517
Score = 33.9 bits (76), Expect = 0.077
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 19/88 (21%)
Query: 4 EGQ-GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG--------------- 47
EGQ G G+ G GP GP GP G G G G G +G +G
Sbjct: 738 EGQSGEKGALGPP-GPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKG 796
Query: 48 -AGAARASGPRG-GAPRGPHGGAASAQD 73
G GPRG P GP G A D
Sbjct: 797 DRGEVGQIGPRGEDGPEGPKGRAGPTGD 824
Score = 33.1 bits (74), Expect = 0.13
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG----AGAARASGPRG 58
+G G G A PG G P PG G +G G G G +GP G G A G RG
Sbjct: 714 KGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRG 772
Score = 32.7 bits (73), Expect = 0.17
Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRG-PRGAGAARASGPRGGAPR 62
QG G TG G PG G G G G G+ G G G P G GP+G P
Sbjct: 567 QGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQG--PP 624
Query: 63 GPHG 66
GP G
Sbjct: 625 GPPG 628
Score = 32.7 bits (73), Expect = 0.17
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA-PRGP 64
+G GS G+ G PG G+ G G+ G G GPRG GP+G A P G
Sbjct: 771 RGLKGSKGEKGEDGFPGFK----GDMGLKGDRGEVGQIGPRGEDG--PEGPKGRAGPTGD 824
Query: 65 HGGAASA 71
G + A
Sbjct: 825 PGPSGQA 831
Score = 32.0 bits (71), Expect = 0.29
Identities = 23/63 (36%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 5 GQGTGGSTGDADGPG--GPGI----PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
G G G G P PG+ P GP G AG G G G GP G R R
Sbjct: 418 GHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRP 477
Query: 59 GAP 61
G P
Sbjct: 478 GLP 480
Score = 32.0 bits (71), Expect = 0.29
Identities = 26/78 (33%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 1 MQAEGQ-GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPR 57
M EG G G G PG GP P G G+ G PG G G G G P
Sbjct: 438 MLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPF 497
Query: 58 GGAPRGPHGGAASAQDGR 75
G G SAQ+ +
Sbjct: 498 RYGGDGSKGPTISAQEAQ 515
Score = 32.0 bits (71), Expect = 0.29
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G G + G G P GP G G PG G G G RG ++ G P
Sbjct: 733 GHPGKEGQSGEKGALG-PPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFP 786
Score = 27.7 bits (60), Expect = 5.6
Identities = 27/70 (38%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGE------AGATGGRGPRG-AGAARASGPRG 58
+G G G PG G P G G G PG AG G GP+G G GP G
Sbjct: 633 RGEDGEIGPRGLPGEAG-PRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPG 691
Query: 59 --GAPRGPHG 66
G P GP G
Sbjct: 692 QQGNP-GPQG 700
>gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens]
Length = 1796
Score = 51.2 bits (121), Expect = 5e-07
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G+ G+ G+ PG PG P G G G PGE G TG +G +G GPRG P GP G
Sbjct: 1663 GSPGAPGEQGPPGTPGFP-GNAGVPGTPGERGLTGIKGEKGNPGVGTQGPRG--PPGPAG 1719
Query: 67 GAASAQDG 74
+ ++ G
Sbjct: 1720 PSGESRPG 1727
Score = 43.1 bits (100), Expect = 1e-04
Identities = 35/92 (38%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 7 GTGGSTGDA-----DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRGGA 60
G GS G DG GP P GP G G PG G TG GP+GA G G +G
Sbjct: 1545 GRDGSPGQRGLPGKDGSSGPPGPPGPIGIPGTPGVPGITGSMGPQGALGPPGVPGAKG-- 1602
Query: 61 PRGPHGGAASAQDGRCPCGARRPDSRLLQLHI 92
RG G S R AR+ +L+Q H+
Sbjct: 1603 ERGERGDLQSQAMVRSV--ARQVCEQLIQSHM 1632
Score = 43.1 bits (100), Expect = 1e-04
Identities = 34/106 (32%), Positives = 41/106 (38%), Gaps = 17/106 (16%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-------G 59
G G TG G PG+ G G G PG AG +G P G + GPRG
Sbjct: 1690 GERGLTGIKGEKGNPGV--GTQGPRGPPGPAGPSGESRPGSPGPPGSPGPRGPPGHLGVP 1747
Query: 60 APRGPHGGAASAQDGRCPC-GARRPDSRLLQLHITMPFSSPMEAEL 104
P+GP G C G R P H P +P++ EL
Sbjct: 1748 GPQGPSGQPGYCDPSSCSAYGVRAP-------HPDQPEFTPVQDEL 1786
Score = 40.4 bits (93), Expect = 8e-04
Identities = 30/81 (37%), Positives = 34/81 (41%), Gaps = 12/81 (14%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG------AGAARASGPRG 58
G G G G PG G PDGP G G PG G G +GP G G G +G
Sbjct: 1469 GPGLRGPKGQQGEPGPKG-PDGPRGEIGLPGPQGPPGPQGPSGLSIQGMPGMPGEKGEKG 1527
Query: 59 G----APRGPHGGAAS-AQDG 74
P+G GG S +DG
Sbjct: 1528 DTGLPGPQGIPGGVGSPGRDG 1548
Score = 40.0 bits (92), Expect = 0.001
Identities = 27/62 (43%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGP 64
QG G G+ G G+P GP G GG G G G G RG G +SGP G P GP
Sbjct: 1514 QGMPGMPGEKGEKGDTGLP-GPQGIPGGVGSPGRDGSPGQRGLPGKDGSSGPPG--PPGP 1570
Query: 65 HG 66
G
Sbjct: 1571 IG 1572
Score = 39.3 bits (90), Expect = 0.002
Identities = 27/61 (44%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 17 GPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGPHGGAASAQD 73
GP GP P GPG G G GE G G GPRG G GP G P+GP G +
Sbjct: 1462 GPAGP--PGGPGLRGPKGQQGEPGPKGPDGPRGEIGLPGPQGPPG--PQGPSGLSIQGMP 1517
Query: 74 G 74
G
Sbjct: 1518 G 1518
Score = 35.0 bits (79), Expect = 0.035
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNA--------GGPGEAGATGGRGPRGAGAARASG 55
+G G G+ GP GP P GP G + G GE G TG GP+G S
Sbjct: 1485 KGPDGPRGEIGLPGPQGPPGPQGPSGLSIQGMPGMPGEKGEKGDTGLPGPQGIPGGVGSP 1544
Query: 56 PRGGAP 61
R G+P
Sbjct: 1545 GRDGSP 1550
Score = 35.0 bits (79), Expect = 0.035
Identities = 30/83 (36%), Positives = 31/83 (37%), Gaps = 24/83 (28%)
Query: 19 GGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG---------------GAPR 62
G PG P PG + G PGE G G G P AG G RG PR
Sbjct: 1654 GPPGEPGRPG-SPGAPGEQGPPGTPGFPGNAGVPGTPGERGLTGIKGEKGNPGVGTQGPR 1712
Query: 63 GPHGGAASAQDGRCPCGARRPDS 85
GP G A P G RP S
Sbjct: 1713 GPPGPAG-------PSGESRPGS 1728
Score = 34.7 bits (78), Expect = 0.045
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G+ GS G PG PG P GP G+ G PG G +G G + A G R P P
Sbjct: 1722 GESRPGSPGP---PGSPG-PRGPPGHLGVPGPQGPSGQPGYCDPSSCSAYGVRAPHPDQP 1777
Score = 34.3 bits (77), Expect = 0.059
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRGGAPRGPH 65
G GS G PG G+P G G++G PG G G G G G + GP+G GP
Sbjct: 1539 GGVGSPGRDGSPGQRGLP-GKDGSSGPPGPPGPIGIPGTPGVPGITGSMGPQGAL--GPP 1595
Query: 66 G 66
G
Sbjct: 1596 G 1596
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 50.4 bits (119), Expect = 8e-07
Identities = 35/79 (44%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 7 GTGGSTGDADGPGG-PGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-GAPRGP 64
G+ G+ G+ GPGG PG P PG G PGE G G +G RG G +SGPRG P GP
Sbjct: 1787 GSAGARGEP-GPGGRPGFPGTPGMQ-GPPGERGLPGEKGERGTG---SSGPRGLPGPPGP 1841
Query: 65 HGGAASAQDGRCPCGARRP 83
G + + G G+R P
Sbjct: 1842 QGESRTGPPG--STGSRGP 1858
Score = 43.9 bits (102), Expect = 7e-05
Identities = 29/70 (41%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAG--ATGGRGPRGAGAARASGPRGGA 60
A +G G G PG PG+ GP G G PGE G TG GPRG GP+G +
Sbjct: 1789 AGARGEPGPGGRPGFPGTPGM-QGPPGERGLPGEKGERGTGSSGPRGLPG--PPGPQGES 1845
Query: 61 PRGPHGGAAS 70
GP G S
Sbjct: 1846 RTGPPGSTGS 1855
Score = 43.5 bits (101), Expect = 1e-04
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 12 TGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAPRGPHGGAA 69
T D+ GP GP P G G G GE G +G GP G G GP+G P+GP+G +
Sbjct: 1578 TQDSVGPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSI 1637
Query: 70 SAQDGR 75
+ GR
Sbjct: 1638 PGEQGR 1643
Score = 43.1 bits (100), Expect = 1e-04
Identities = 30/66 (45%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG--GA 60
G G TG PG PG P GP G+ G G+ GA G RGP G G+ +GP G G
Sbjct: 1654 GLPGRTGTPGLPGPPG-PMGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGK 1712
Query: 61 PRGPHG 66
P G HG
Sbjct: 1713 P-GDHG 1717
Score = 42.0 bits (97), Expect = 3e-04
Identities = 30/65 (46%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
QG G GDA PG PG PG G PG G G RG G A GPRG P GP
Sbjct: 1641 QGRQGMKGDAGEPGLPGRTGTPG-LPGPPGPMGPPGDRGFTGKDG--AMGPRG--PPGPP 1695
Query: 66 GGAAS 70
G S
Sbjct: 1696 GSPGS 1700
Score = 37.4 bits (85), Expect = 0.007
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 11/63 (17%)
Query: 7 GTGGSTGDADGPGGPGI-----------PDGPGGNAGGPGEAGATGGRGPRGAGAARASG 55
G G G A GPG G P GP G+ G PG G G +GP G G
Sbjct: 1583 GPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPGEQG 1642
Query: 56 PRG 58
+G
Sbjct: 1643 RQG 1645
Score = 37.4 bits (85), Expect = 0.007
Identities = 27/65 (41%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRGGAPRGPH 65
G G TG DG GP P GP G+ G PG G +G G P G SG +G +G
Sbjct: 1675 GDRGFTGK-DGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPGDHGRPGPSGLKG--EKGDR 1731
Query: 66 GGAAS 70
G AS
Sbjct: 1732 GDIAS 1736
Score = 35.4 bits (80), Expect = 0.027
Identities = 32/90 (35%), Positives = 36/90 (40%), Gaps = 21/90 (23%)
Query: 7 GTGGSTGDADGPGGPGIP----------DGPGGNAGGP--------GEAGATGGRGPRG- 47
G G+ G PG G+P GP G G P G G+TG RGP G
Sbjct: 1802 GFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRTGPPGSTGSRGPPGP 1861
Query: 48 AGAARASGPRGGAPRGPHGGAASAQDGRCP 77
G SG RG P GP G S+Q P
Sbjct: 1862 PGRPGNSGIRG--PPGPPGYCDSSQCASIP 1889
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 50.4 bits (119), Expect = 8e-07
Identities = 35/79 (44%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 7 GTGGSTGDADGPGG-PGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-GAPRGP 64
G+ G+ G+ GPGG PG P PG G PGE G G +G RG G +SGPRG P GP
Sbjct: 2951 GSAGARGEP-GPGGRPGFPGTPGMQ-GPPGERGLPGEKGERGTG---SSGPRGLPGPPGP 3005
Query: 65 HGGAASAQDGRCPCGARRP 83
G + + G G+R P
Sbjct: 3006 QGESRTGPPG--STGSRGP 3022
Score = 43.9 bits (102), Expect = 7e-05
Identities = 29/70 (41%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAG--ATGGRGPRGAGAARASGPRGGA 60
A +G G G PG PG+ GP G G PGE G TG GPRG GP+G +
Sbjct: 2953 AGARGEPGPGGRPGFPGTPGM-QGPPGERGLPGEKGERGTGSSGPRGLPG--PPGPQGES 3009
Query: 61 PRGPHGGAAS 70
GP G S
Sbjct: 3010 RTGPPGSTGS 3019
Score = 43.5 bits (101), Expect = 1e-04
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 12 TGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAPRGPHGGAA 69
T D+ GP GP P G G G GE G +G GP G G GP+G P+GP+G +
Sbjct: 2742 TQDSVGPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSI 2801
Query: 70 SAQDGR 75
+ GR
Sbjct: 2802 PGEQGR 2807
Score = 43.1 bits (100), Expect = 1e-04
Identities = 30/66 (45%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG--GA 60
G G TG PG PG P GP G+ G G+ GA G RGP G G+ +GP G G
Sbjct: 2818 GLPGRTGTPGLPGPPG-PMGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGK 2876
Query: 61 PRGPHG 66
P G HG
Sbjct: 2877 P-GDHG 2881
Score = 42.0 bits (97), Expect = 3e-04
Identities = 30/65 (46%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
QG G GDA PG PG PG G PG G G RG G A GPRG P GP
Sbjct: 2805 QGRQGMKGDAGEPGLPGRTGTPG-LPGPPGPMGPPGDRGFTGKDG--AMGPRG--PPGPP 2859
Query: 66 GGAAS 70
G S
Sbjct: 2860 GSPGS 2864
Score = 37.4 bits (85), Expect = 0.007
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 11/63 (17%)
Query: 7 GTGGSTGDADGPGGPGI-----------PDGPGGNAGGPGEAGATGGRGPRGAGAARASG 55
G G G A GPG G P GP G+ G PG G G +GP G G
Sbjct: 2747 GPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPGEQG 2806
Query: 56 PRG 58
+G
Sbjct: 2807 RQG 2809
Score = 37.4 bits (85), Expect = 0.007
Identities = 27/65 (41%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRGGAPRGPH 65
G G TG DG GP P GP G+ G PG G +G G P G SG +G +G
Sbjct: 2839 GDRGFTGK-DGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPGDHGRPGPSGLKG--EKGDR 2895
Query: 66 GGAAS 70
G AS
Sbjct: 2896 GDIAS 2900
Score = 35.4 bits (80), Expect = 0.027
Identities = 32/90 (35%), Positives = 36/90 (40%), Gaps = 21/90 (23%)
Query: 7 GTGGSTGDADGPGGPGIP----------DGPGGNAGGP--------GEAGATGGRGPRG- 47
G G+ G PG G+P GP G G P G G+TG RGP G
Sbjct: 2966 GFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRTGPPGSTGSRGPPGP 3025
Query: 48 AGAARASGPRGGAPRGPHGGAASAQDGRCP 77
G SG RG P GP G S+Q P
Sbjct: 3026 PGRPGNSGIRG--PPGPPGYCDSSQCASIP 3053
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 50.1 bits (118), Expect = 1e-06
Identities = 31/62 (50%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG-GAPRGP 64
G G G PG PG P GP G+ G PG GA G RGPRG G A G RG P GP
Sbjct: 1030 GHPGMPGGMGTPGEPG-PQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGP 1088
Query: 65 HG 66
G
Sbjct: 1089 QG 1090
Score = 42.7 bits (99), Expect = 2e-04
Identities = 29/77 (37%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 6 QGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
QG G G G PGIP GP G G PGE G G +GP G G GP G
Sbjct: 1098 QGVAGERGHLGSRGFPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPPGEMGPKGPPGAVGE 1157
Query: 63 GPHGGAASAQDGRCPCG 79
G A + P G
Sbjct: 1158 PGLPGEAGMKGDLGPLG 1174
Score = 42.4 bits (98), Expect = 2e-04
Identities = 34/89 (38%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAAR-------ASGPR 57
G G GD G PG+P G G+ G PG G G GP+G +R A G R
Sbjct: 1006 GIVGEKGDRGMMGPPGVPGPKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRR 1065
Query: 58 GGAPRGPHGGAASAQDGRCPCGARRPDSR 86
G PRGP G A Q R G P R
Sbjct: 1066 G--PRGP-DGPAGEQGSRGLKGPPGPQGR 1091
Score = 41.2 bits (95), Expect = 5e-04
Identities = 26/64 (40%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGGAPR 62
G G G+ G PG P GP G G PG AG G +GP G +G GP G R
Sbjct: 1451 GQAGQQGEQGDDGDPG-PMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPG--KR 1507
Query: 63 GPHG 66
G G
Sbjct: 1508 GTEG 1511
Score = 40.0 bits (92), Expect = 0.001
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP--RG 63
+G G G A+GP GP GP G+ G GE G G G G R + G P G
Sbjct: 1329 KGEQGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGHPG 1388
Query: 64 PHG 66
P G
Sbjct: 1389 PRG 1391
Score = 39.3 bits (90), Expect = 0.002
Identities = 25/56 (44%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG-AGAARASGPRG 58
+GT G TG G PG PG G G PG AG G +GP G G GPRG
Sbjct: 1507 RGTEGRTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRG 1562
Score = 38.9 bits (89), Expect = 0.002
Identities = 29/75 (38%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPRGG-AP 61
G G G PG PG P+G G+ G PG+ G G +G GA G GP G P
Sbjct: 892 GKVGDKGSIGFPGPPG-PEGFPGDIGPPGDNGPEGMKGKPGARGLPGPRGQLGPEGDEGP 950
Query: 62 RGPHGG-AASAQDGR 75
GP G Q GR
Sbjct: 951 MGPPGAPGLEGQPGR 965
Score = 38.9 bits (89), Expect = 0.002
Identities = 27/63 (42%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAPRG 63
QG G G PG PG P GP G+ G G GA G G +G G A G +G P G
Sbjct: 1263 QGQLGEMGVPGDPGPPGTP-GPKGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPLG 1321
Query: 64 PHG 66
P G
Sbjct: 1322 PPG 1324
Score = 38.5 bits (88), Expect = 0.003
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 6 QGTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRG-------AGAARASGP 56
+G G G+ PG PG+ GP G +G GE G TG +G +G G GP
Sbjct: 1218 KGQEGLMGEDGPPGPPGVTGVRGPEGKSGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGP 1277
Query: 57 RG-GAPRGPHG 66
G P+G G
Sbjct: 1278 PGTPGPKGSRG 1288
Score = 38.5 bits (88), Expect = 0.003
Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG-----------GNAGGPGEAGATGGRGPRGAGAARAS 54
+G G GD PG PG P G G G PG G G +G +GA +
Sbjct: 1348 RGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGHPGPRGWPGPKGSKGAEGPKGK 1407
Query: 55 GPRGGAP--RGPHG 66
+ GAP RG G
Sbjct: 1408 QGKAGAPGRRGVQG 1421
Score = 38.1 bits (87), Expect = 0.004
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGR---GPRGAGAARASGPRGG 59
G+ G+ GD PG G P PG G+ G PG AG G + GP G+ A+ R G
Sbjct: 683 GKAHDGAKGDMGLPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQG 742
Query: 60 APRGPHG 66
P GP G
Sbjct: 743 LP-GPVG 748
Score = 37.4 bits (85), Expect = 0.007
Identities = 28/70 (40%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG----- 58
G G G PG GP P G G G PGEAG G GP G G G RG
Sbjct: 1132 GPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLE 1191
Query: 59 --GAPRGPHG 66
P GP G
Sbjct: 1192 GDSGPMGPDG 1201
Score = 37.0 bits (84), Expect = 0.009
Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 15/67 (22%)
Query: 7 GTGGSTGDADGPGGPGIPD--------------GPGGNAGGPGEAGATGGRGPRGAGAAR 52
G G GD PG PG+P GP GN G PG GA G +G G +
Sbjct: 625 GPPGPKGDCGLPGPPGLPGLPGIPGARGPRGPPGPYGNPGLPGPPGAKGQKGDPGLSPGK 684
Query: 53 A-SGPRG 58
A G +G
Sbjct: 685 AHDGAKG 691
Score = 37.0 bits (84), Expect = 0.009
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 6 QGTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAP 61
QG G G+ +G GP PDG G+ G PG G G +G G G GP G
Sbjct: 1179 QGLIGQRGEPGLEGDSGPMGPDGLKGDRGDPGPDGEHGEKGQEGLMGEDGPPGPPGVTGV 1238
Query: 62 RGPHG 66
RGP G
Sbjct: 1239 RGPEG 1243
Score = 35.8 bits (81), Expect = 0.020
Identities = 31/92 (33%), Positives = 34/92 (36%), Gaps = 31/92 (33%)
Query: 6 QGTGGSTGD-----ADGPGGPGIPDGPGGNAGG---------------PGEAGATGGRGP 45
QG GS G A G GP PDGP G G PG+ G G RG
Sbjct: 1047 QGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGRPGRPGQQGVAGERGH 1106
Query: 46 RGA----GAARASGPRG-------GAPRGPHG 66
G+ G SGP G P+GP G
Sbjct: 1107 LGSRGFPGIPGPSGPPGTKGLPGEPGPQGPQG 1138
Score = 35.8 bits (81), Expect = 0.020
Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
+G+ GS G PG G PG G G G G G GP+G + + P G
Sbjct: 1284 KGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPG 1343
Query: 64 PHGGAASAQD 73
P G D
Sbjct: 1344 PPGDRGPVGD 1353
Score = 35.4 bits (80), Expect = 0.027
Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 7 GTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA 60
G G GD DG G +G G G PG G TG RGP G + R GA
Sbjct: 1201 GLKGDRGDPGPDGEHGEKGQEGLMGEDGPPGPPGVTGVRGPEGKSGKQGEKGRTGA 1256
Score = 35.0 bits (79), Expect = 0.035
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G GD G PG+ PG G+ G PG GA G GP G + S G P
Sbjct: 847 GEPGLKGDKGEQGVPGVSGDPGFQGDKGSQGLPGFPGARGKPGPLGKVGDKGSIGFPGPP 906
Query: 62 RGPHG 66
GP G
Sbjct: 907 -GPEG 910
Score = 34.7 bits (78), Expect = 0.045
Identities = 33/90 (36%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 6 QGTGGSTGDADGPGGPGI--PDG-PG--GNAGGPGEAGATGGRGPRGAGAARASGPRGGA 60
QG G G G GI PDG PG G AG GE G G GP G R + G
Sbjct: 1423 QGLPGPRGVVGRQGLEGIAGPDGLPGRDGQAGQQGEQGDDGDPGPMGPAGKRGNPGVAGL 1482
Query: 61 P--RGPHG--GAASAQDGRCPCGARRPDSR 86
P +GP G G + P G R + R
Sbjct: 1483 PGAQGPPGFKGESGLPGQLGPPGKRGTEGR 1512
Score = 34.7 bits (78), Expect = 0.045
Identities = 30/79 (37%), Positives = 33/79 (41%), Gaps = 15/79 (18%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-GAPRGPHGG-------- 67
GP G P G G G G G G +GPRG GPRG P GP GG
Sbjct: 1574 GPLGILGPSGLPGPKGDKGSRGDWGLQGPRG-----PPGPRGRPGPPGPPGGPIQLQQDD 1628
Query: 68 -AASAQDGRCPCGARRPDS 85
A+ Q GA RP+S
Sbjct: 1629 LGAAFQTWMDTSGALRPES 1647
Score = 34.3 bits (77), Expect = 0.059
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRG-PRGAGAARASGPRG-GAP 61
QG G G++ PG G P G G G PG G G +G P +G G G P
Sbjct: 1486 QGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGP 1545
Query: 62 RGPHG--GAASAQDGRCPCGARRPDSRLLQLHITMPFSSP 99
+GP G G Q R P G + + L I P P
Sbjct: 1546 KGPPGDIGFKGIQGPRGPPGLMGKEGIVGPLGILGPSGLP 1585
Score = 33.1 bits (74), Expect = 0.13
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-APRGP 64
G G+ G G G P GP G+ G G+ G G G +G G GP G P+G
Sbjct: 697 GLSGNPGPPGRKGHKGYP-GPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKGS 755
Query: 65 HG 66
G
Sbjct: 756 RG 757
Score = 33.1 bits (74), Expect = 0.13
Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAPR 62
G G G PG PG+ GP G G PGE G G G G G GP G P+
Sbjct: 778 GVPGKRGKMGMPGFPGVFGERGPPGLDGNPGELGLPGPPGVPGLIGDLGVLGPIGYPGPK 837
Query: 63 GPHG 66
G G
Sbjct: 838 GMKG 841
Score = 32.3 bits (72), Expect = 0.23
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 24 PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
P GP G+ G PG G G G G A GPRG P GP+G
Sbjct: 626 PPGPKGDCGLPGPPGLPGLPGIPG-----ARGPRG--PPGPYG 661
Score = 31.6 bits (70), Expect = 0.38
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPRGGAPR 62
G G G G PG+P GP G G G+ G + G+ GA G SG G R
Sbjct: 649 GARGPRGPPGPYGNPGLP-GPPGAKGQKGDPGLSPGKAHDGAKGDMGLPGLSGNPGPPGR 707
Query: 63 GPHGG 67
H G
Sbjct: 708 KGHKG 712
Score = 31.2 bits (69), Expect = 0.50
Identities = 29/88 (32%), Positives = 34/88 (38%), Gaps = 16/88 (18%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--------GNAGGPGEAGATGGRGPRGAGAARASGPRG 58
G G G+ PG PG G G G GE G G GP G GP+G
Sbjct: 973 GLDGVKGEPGDPGRPGPVGEQGFMGFIGLVGEPGIVGEKGDRGMMGPPG-----VPGPKG 1027
Query: 59 --GAPRGPHGGAASAQDG-RCPCGARRP 83
G P P G + G + P G+R P
Sbjct: 1028 SMGHPGMPGGMGTPGEPGPQGPPGSRGP 1055
Score = 29.6 bits (65), Expect = 1.5
Identities = 27/79 (34%), Positives = 30/79 (37%), Gaps = 12/79 (15%)
Query: 6 QGTGGSTGDADGPGGPGIP--DGPGGN---AGGPGEAGATGGR---GPRGA----GAARA 53
QG G G PG G +GP G AG PG G G + GPRG G
Sbjct: 1381 QGQPGHPGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGI 1440
Query: 54 SGPRGGAPRGPHGGAASAQ 72
+GP G R G Q
Sbjct: 1441 AGPDGLPGRDGQAGQQGEQ 1459
Score = 29.3 bits (64), Expect = 1.9
Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 1 MQAEGQ-GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEA----GATGGRGPRGAGAARA 53
M A+G+ G G G GP GP P G G G G+A G G RGP G R
Sbjct: 1299 MGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRG 1358
Query: 54 SGPRGGAP 61
G P
Sbjct: 1359 EPGDPGYP 1366
Score = 28.9 bits (63), Expect = 2.5
Identities = 27/80 (33%), Positives = 31/80 (38%), Gaps = 17/80 (21%)
Query: 4 EGQ-GTGGSTGDADGPGGPGIPD-----GPGGNAGG---PGEAGATGGRGPRGAGAARAS 54
+GQ G GS G PG G+P GP G+ G PG G G G RG
Sbjct: 723 QGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGK 782
Query: 55 GPRGGAP--------RGPHG 66
+ G P RGP G
Sbjct: 783 RGKMGMPGFPGVFGERGPPG 802
Score = 27.7 bits (60), Expect = 5.6
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAAR 52
+G G G G PG P+G G G PG G G G G +R
Sbjct: 711 KGYPGPAGHPGEQGQPG-PEGSPGAKGYPGRQGLPGPVGDPGPKGSR 756
Score = 27.3 bits (59), Expect = 7.3
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GAPR 62
+G G+ G GP G P+G G G PG G G G +G G G +G G P
Sbjct: 927 KGKPGARG-LPGPRGQLGPEGDEGPMGPPGAPGLEGQPGRKGFPGRPGLDGVKGEPGDPG 985
Query: 63 GP 64
P
Sbjct: 986 RP 987
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 50.1 bits (118), Expect = 1e-06
Identities = 30/67 (44%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 7 GTGGSTGDADGPGGPGIP-----DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA- 60
G G G+A PG PG+ DGP G G PGE G+ G GP G G GP G A
Sbjct: 68 GKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAG 127
Query: 61 PRGPHGG 67
GP GG
Sbjct: 128 VSGPPGG 134
Score = 48.1 bits (113), Expect = 4e-06
Identities = 31/85 (36%), Positives = 38/85 (44%), Gaps = 20/85 (23%)
Query: 10 GSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGP------------------RGAGAA 51
GS G GP GP P GP G+ G PG G G RGP +GA A
Sbjct: 551 GSIG-RPGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGAAGA 609
Query: 52 RASGPRGG-APRGPHGGAASAQDGR 75
GP G P+GP G +++DG+
Sbjct: 610 GLDGPEGDQGPQGPQGVPGTSKDGQ 634
Score = 43.9 bits (102), Expect = 7e-05
Identities = 32/76 (42%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG--GAP-- 61
+G G G+A G PG+P G+AG PGE G G RG G A GP+G GAP
Sbjct: 351 RGRAGELGEAGPSGEPGVP----GDAGMPGERGEAGHRGSAG-----ALGPQGPPGAPGV 401
Query: 62 RGPHGGAASAQDGRCP 77
RG G S D P
Sbjct: 402 RGFQGQKGSMGDPGLP 417
Score = 43.5 bits (101), Expect = 1e-04
Identities = 35/87 (40%), Positives = 41/87 (47%), Gaps = 14/87 (16%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GAP-- 61
G G G+A G PG GP G G PG AG+ G +G RG AG +GP G G P
Sbjct: 313 GLDGQKGEAGRNGAPG-EKGPNGLPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGD 371
Query: 62 ------RGP--HGGAASAQDGRCPCGA 80
RG H G+A A + P GA
Sbjct: 372 AGMPGERGEAGHRGSAGALGPQGPPGA 398
Score = 40.8 bits (94), Expect = 6e-04
Identities = 28/63 (44%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-APRG 63
QG G GD GPGG P G G AG G G G GP G G SG RG P+G
Sbjct: 420 QGLRGDVGDR-GPGGAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGELGPKG 478
Query: 64 PHG 66
G
Sbjct: 479 TQG 481
Score = 40.4 bits (93), Expect = 8e-04
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP--RG 63
+G G GD PG G P G G +G PG G G G G + R GAP +G
Sbjct: 273 EGFRGPKGDLGRPGPKGTP-GVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKG 331
Query: 64 PHG 66
P+G
Sbjct: 332 PNG 334
Score = 39.3 bits (90), Expect = 0.002
Identities = 31/81 (38%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGG------RGPRG-AGAARASGPRG 58
+G G G PG PG+ G G G PGEAG +G RGP G +G GP G
Sbjct: 97 KGAPGERGSLGPPGPPGL--GGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPG 154
Query: 59 --GAPRGPHGGAASAQDGRCP 77
G P P A D +CP
Sbjct: 155 PPGPPGHPGVLPEGATDLQCP 175
Score = 39.3 bits (90), Expect = 0.002
Identities = 35/88 (39%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAP-RGP 64
G G G+ G G P GP G AG PG G G RG RG G G RG RGP
Sbjct: 196 GYKGEQGEVGKDGEKGDP-GPPGPAGLPGSVGLQGPRGLRGLPGPLGPPGDRGPIGFRGP 254
Query: 65 HG-----GAASAQDGRCPCGARRPDSRL 87
G G A + R P G R P L
Sbjct: 255 PGIPGAPGKAGDRGERGPEGFRGPKGDL 282
Score = 39.3 bits (90), Expect = 0.002
Identities = 30/76 (39%), Positives = 33/76 (43%), Gaps = 17/76 (22%)
Query: 6 QGTGGSTGDADGPGGP---GIP-----DGPGGNAGGPGEAGATGGRGPRG-------AGA 50
QG G G+ PG P G+P GP G G PG G G RGP G GA
Sbjct: 201 QGEVGKDGEKGDPGPPGPAGLPGSVGLQGPRGLRGLPGPLGPPGDRGPIGFRGPPGIPGA 260
Query: 51 ARASGPRGGAPRGPHG 66
+G RG RGP G
Sbjct: 261 PGKAGDRG--ERGPEG 274
Score = 38.9 bits (89), Expect = 0.002
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 2 QAEGQGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG 58
+A +G+ G+ G PG PG+ G G+ G PG G G RG G G A+GP+G
Sbjct: 380 EAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPGPQGLRGDVGDRGPGGAAGPKG 439
Score = 38.9 bits (89), Expect = 0.002
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 7 GTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG-G 59
G G GD G G+P GP G G GE+G+ G GP+G G SG +G
Sbjct: 433 GAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGELGPKGTQGPNGTSGVQGVP 492
Query: 60 APRGPHG 66
P GP G
Sbjct: 493 GPPGPLG 499
Score = 38.5 bits (88), Expect = 0.003
Identities = 31/75 (41%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATG--------GR----GPRGAGAAR 52
G G G+A PG GP P G G G PGEAG G GR GP+GA R
Sbjct: 44 GQDGIDGEAGPPGLPGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGER 103
Query: 53 AS-GPRGGAPRGPHG 66
S GP G G G
Sbjct: 104 GSLGPPGPPGLGGKG 118
Score = 37.0 bits (84), Expect = 0.009
Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPR- 62
+G G G PG GP GP G G PG+AG G RGP G GP+G R
Sbjct: 231 RGLRGLPGPLGPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEG-----FRGPKGDLGRP 285
Query: 63 GPHG 66
GP G
Sbjct: 286 GPKG 289
Score = 35.4 bits (80), Expect = 0.027
Identities = 34/107 (31%), Positives = 37/107 (34%), Gaps = 30/107 (28%)
Query: 7 GTGGSTGDADGPGGPGI--------------PDGPGGNAGGPGEAGATGGRGPRGA---- 48
G G G PG PG+ P GP G G PG G TG +G +G
Sbjct: 148 GLPGPPGPPGPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQGEVGKD 207
Query: 49 GAARASGPRGGA----------PRGPHG--GAASAQDGRCPCGARRP 83
G GP G A PRG G G R P G R P
Sbjct: 208 GEKGDPGPPGPAGLPGSVGLQGPRGLRGLPGPLGPPGDRGPIGFRGP 254
Score = 35.0 bits (79), Expect = 0.035
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 1 MQAEGQGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
+ A G G G PG PG P DG G AG PG G GP+GA
Sbjct: 20 LAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGPP---GPKGAPGKPGKPGEA 76
Query: 59 GAPRGPHGGAASAQDG 74
G P P + +DG
Sbjct: 77 GLPGLPGVDGLTGRDG 92
Score = 34.3 bits (77), Expect = 0.059
Identities = 28/69 (40%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G GS G A GP GP P PG G G G+ G G +G RG R G G P
Sbjct: 382 GHRGSAG-ALGPQGP--PGAPGVRGFQGQKGSMGDPGLPGPQGLRGDVGDRGPGGAAG-P 437
Query: 62 RGPHGGAAS 70
+G G A S
Sbjct: 438 KGDQGIAGS 446
Score = 34.3 bits (77), Expect = 0.059
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 3 AEGQGTGGSTGDADGPGGP-GIP-------DGPGGNAGGPGEAGATGGRGPRG 47
A G G G GD GP GP G+P DG G G PG+ G G G +G
Sbjct: 606 AAGAGLDGPEGD-QGPQGPQGVPGTSKDGQDGAPGEPGPPGDPGLPGAIGAQG 657
Score = 33.5 bits (75), Expect = 0.10
Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G GD G GP GP G+ G PG G G GP G + G P
Sbjct: 259 GAPGKAGDR-GERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVP 312
Score = 33.5 bits (75), Expect = 0.10
Identities = 32/96 (33%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGP---------GEAGATGGRGPRG-------AGA 50
G G+ G A G PG+P G G G P G GA G +GP G AG+
Sbjct: 286 GPKGTPGVAGPSGEPGMP-GKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGS 344
Query: 51 ARASGPRGGAPRGPHGGAASAQDGRCPCGARRPDSR 86
G RG A G G A + + P A P R
Sbjct: 345 KGEKGERGRA--GELGEAGPSGEPGVPGDAGMPGER 378
Score = 32.3 bits (72), Expect = 0.23
Identities = 25/62 (40%), Positives = 26/62 (41%), Gaps = 11/62 (17%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGR---------GPRGA-GAARASGP 56
G G G G PGIP PG AG GE G G R GP+G G A SG
Sbjct: 241 GPPGDRGPIGFRGPPGIPGAPG-KAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGE 299
Query: 57 RG 58
G
Sbjct: 300 PG 301
Score = 32.0 bits (71), Expect = 0.29
Identities = 26/75 (34%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
+G G GD G G G+ DGP G+ G G G G GA GP G P P
Sbjct: 595 RGNQGDRGDK-GAAGAGL-DGPEGDQGPQGPQGVPGTSKDGQDGAPGEPGPPGD-PGLPG 651
Query: 66 GGAASAQDGRCPCGA 80
A G C A
Sbjct: 652 AIGAQGTPGICDTSA 666
Score = 30.4 bits (67), Expect = 0.86
Identities = 27/74 (36%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
+G GS G+ GP G P+G G G PG G G +G G G P G
Sbjct: 465 KGESGSRGEL-GPKGTQGPNGTSGVQGVPGPPGPLGLQGVPGVPGIT------GKP-GVP 516
Query: 66 GGAASAQDGRCPCG 79
G AS Q R CG
Sbjct: 517 GKEASEQRIRELCG 530
Score = 30.0 bits (66), Expect = 1.1
Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRG--PRGAGAARASGPRGG 59
G G G + PGG G+ PG G G PG G G G P GA +
Sbjct: 121 GPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQCPSICPP 180
Query: 60 APRGPHG 66
P GP G
Sbjct: 181 GPPGPPG 187
Score = 28.9 bits (63), Expect = 2.5
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPR 57
G G G PG PG P PG G G PG + +G G SG R
Sbjct: 628 GTSKDGQDGAPGEPGPPGDPGLPGAIGAQGTPGICDTSACQGAVLGGVGEKSGSR 682
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 49.3 bits (116), Expect = 2e-06
Identities = 29/59 (49%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
+G G +G A PG PGIP PG AGG GEAG G RG RG R R G P P
Sbjct: 2024 RGPPGPSGLAGEPGKPGIPGLPG-RAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLP 2081
Score = 47.8 bits (112), Expect = 5e-06
Identities = 32/78 (41%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 6 QGTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGA-GAARASGP 56
+G G GD PG PG P GP G+ G G AG G RGP G G + G
Sbjct: 1727 EGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGK 1786
Query: 57 RGGA-PRGPHGGAASAQD 73
G A P GP+G A A D
Sbjct: 1787 PGAAGPSGPNGAAGKAGD 1804
Score = 45.4 bits (106), Expect = 3e-05
Identities = 35/89 (39%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
Query: 7 GTGGSTGDADGPGGPGIP-----DGPGG-NAGGPGEAGATGGRGPRG-AGAARASGPRG- 58
G+ G GD PG PG P GPG G PG+ G G RGP+G G A G RG
Sbjct: 1688 GSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGI 1747
Query: 59 ---GAPRGPHG-----GAASAQDGRCPCG 79
P GP G G A + R P G
Sbjct: 1748 EGFRGPPGPQGDPGVRGPAGEKGDRGPPG 1776
Score = 44.7 bits (104), Expect = 4e-05
Identities = 35/90 (38%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 4 EGQ-GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRG-AGAARASGP 56
+GQ G G G+ G PGI P G G+AG PG G+ G RGP G G GP
Sbjct: 2688 DGQPGPKGDQGEKGERGTPGIGGFPGPSGNDGSAGPPGPPGSVGPRGPEGLQGQKGERGP 2747
Query: 57 RG----GAPRGPHGGAASAQDGR-CPCGAR 81
G GAP P + GR P G R
Sbjct: 2748 PGERVVGAPGVPGAPGERGEQGRPGPAGPR 2777
Score = 43.1 bits (100), Expect = 1e-04
Identities = 33/93 (35%), Positives = 37/93 (39%), Gaps = 25/93 (26%)
Query: 7 GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGG--RGPRGA-------GAAR 52
G G GD PG PG+ P GP G G PGE G G GP GA G +
Sbjct: 2177 GPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSG 2236
Query: 53 ASGPRG-----------GAPRGPHGGAASAQDG 74
GP+G G P P AS +DG
Sbjct: 2237 LVGPQGSPGLPGQVGETGKPGAPGRDGASGKDG 2269
Score = 42.7 bits (99), Expect = 2e-04
Identities = 35/90 (38%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPG--GNAGGPGEAGATGGRG-PRGAGAARASGPRGGAP 61
G G GD++ PG PG P PG G G PG G G RG P G A G RG P
Sbjct: 1442 GKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERG--P 1499
Query: 62 RGPHG-----GAASAQDGRCPCGARRPDSR 86
GP G G A + P G P R
Sbjct: 1500 PGPAGSRGLPGVAGRPGAKGPEGPPGPTGR 1529
Score = 42.0 bits (97), Expect = 3e-04
Identities = 30/79 (37%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGAGAARASGPRG--- 58
G+ + G+ PG G P PG G G PG G+ G GPRG R GPRG
Sbjct: 1290 GSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGER--GPRGPKG 1347
Query: 59 --GAPRGPHGGAASAQDGR 75
GAP GG GR
Sbjct: 1348 EPGAPGQVIGGEGPGLPGR 1366
Score = 41.6 bits (96), Expect = 4e-04
Identities = 28/65 (43%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 5 GQGTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG--G 59
G+G G TG PG PG GP G+ G PG+ G TG G G GA+ G RG G
Sbjct: 2216 GRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPG 2275
Query: 60 APRGP 64
P P
Sbjct: 2276 VPGSP 2280
Score = 41.6 bits (96), Expect = 4e-04
Identities = 30/74 (40%), Positives = 34/74 (45%), Gaps = 12/74 (16%)
Query: 7 GTGGSTGDADGPGGPGIPD-----GPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G G A PG GIP GP G+ G PG +G G +G G G GPRG
Sbjct: 2419 GPSGERGLAGPPGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGVG---LPGPRG--E 2473
Query: 62 RGPHGGAASAQDGR 75
RG G +DGR
Sbjct: 2474 RGEPG--IRGEDGR 2485
Score = 41.2 bits (95), Expect = 5e-04
Identities = 30/71 (42%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPG-----GNAGGPGEAGATGGRGPRGA-GAARASGPRG- 58
QG G +G PG PG PG G G PGE G G +G GA G GP+G
Sbjct: 1817 QGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGE 1876
Query: 59 -GAP--RGPHG 66
GAP GP G
Sbjct: 1877 RGAPGILGPQG 1887
Score = 40.8 bits (94), Expect = 6e-04
Identities = 29/74 (39%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 2 QAEGQGTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARA 53
+A GT G+ G PG PG P GP G G PG+ GG GP G
Sbjct: 1312 RAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQ--VIGGEGPGLPGRKGD 1369
Query: 54 SGPRG-GAPRGPHG 66
GP G PRGP G
Sbjct: 1370 PGPSGPPGPRGPLG 1383
Score = 40.8 bits (94), Expect = 6e-04
Identities = 31/80 (38%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG-APRG 63
G+ G G A PG GP P GP G G GE G G G A G +G P G
Sbjct: 1504 GSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAG 1563
Query: 64 PHGGAASAQDGRCPCGARRP 83
P GA Q R P G P
Sbjct: 1564 PR-GATGVQGERGPPGLVLP 1582
Score = 40.0 bits (92), Expect = 0.001
Identities = 29/77 (37%), Positives = 33/77 (42%), Gaps = 21/77 (27%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-------------GAARA 53
G G GD PG PG+P G AG G GA G RGP G G+ +
Sbjct: 1634 GEVGEKGDEGPPGDPGLP----GKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGS 1689
Query: 54 SGPRGG----APRGPHG 66
SGP+G P GP G
Sbjct: 1690 SGPKGDRGEPGPPGPPG 1706
Score = 39.7 bits (91), Expect = 0.001
Identities = 32/74 (43%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 7 GTGGSTGDAD--GPGGP-GIPDGPGGNAG--GPGEAGATGGRGPRGAGAARASGPRGG-A 60
G G GD GP GP G P PG G GPG G G GP G R GP G
Sbjct: 1329 GLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPR--GPLGDPG 1386
Query: 61 PRGPHGGAASAQDG 74
PRGP G +A G
Sbjct: 1387 PRGPPGLPGTAMKG 1400
Score = 39.3 bits (90), Expect = 0.002
Identities = 25/60 (41%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G G PG PG+P G G G PG A A G RG GA S R G P P
Sbjct: 1260 GEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTP 1319
Score = 39.3 bits (90), Expect = 0.002
Identities = 29/72 (40%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 4 EGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
EG G G GD GP P GP G G PG G G G G G RG P G
Sbjct: 1359 EGPGLPGRKGDP----GPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERG--PPG 1412
Query: 64 P-HGGAASAQDG 74
P GG A + G
Sbjct: 1413 PGEGGIAPGEPG 1424
Score = 38.5 bits (88), Expect = 0.003
Identities = 31/81 (38%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG----GAP 61
G G G PG PG DG G G G +G G GP+G GA GP+G P
Sbjct: 1836 GKPGLNGKNGEPGDPG-EDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGLPGP 1894
Query: 62 RGPHG-GAASAQDGRCPCGAR 81
GP G G G P G R
Sbjct: 1895 VGPPGQGFPGVPGGTGPKGDR 1915
Score = 38.5 bits (88), Expect = 0.003
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGGAPR 62
G G G GP GP P G G+ G PG G G GP+G G +GP G
Sbjct: 2162 GPEGKPG-LQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLT 2220
Query: 63 GPHG 66
GP G
Sbjct: 2221 GPTG 2224
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 5 GQGTGG-STGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASG-PRGGAPR 62
G G GG + G+ PG PG P GP G G PG+ G G G G P PR
Sbjct: 1412 GPGEGGIAPGEPGLPGLPGSP-GPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPR 1470
Query: 63 GPHGGAASAQDGRCP 77
GP G D P
Sbjct: 1471 GPPGAIGPKGDRGFP 1485
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/72 (38%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRG 58
QG G G PG G GP G+ G PG G G GPRG G +GP G
Sbjct: 2107 QGPPGLKGAKGEPGSNG-DQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEG 2165
Query: 59 ----GAPRGPHG 66
PRGP G
Sbjct: 2166 KPGLQGPRGPPG 2177
Score = 37.7 bits (86), Expect = 0.005
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 16/76 (21%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGA-------------GAA 51
G G G + PG G+ P G G G PG G G +G RG G+A
Sbjct: 2662 GEPGVPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGPSGNDGSA 2721
Query: 52 RASGPRGG-APRGPHG 66
GP G PRGP G
Sbjct: 2722 GPPGPPGSVGPRGPEG 2737
Score = 37.0 bits (84), Expect = 0.009
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP--RG 63
QG G G A G G P G G +G G+ GA G GP GA R G P RG
Sbjct: 1757 QGDPGVRGPAGEKGDRG-PPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRG 1815
Query: 64 PHG 66
G
Sbjct: 1816 EQG 1818
Score = 37.0 bits (84), Expect = 0.009
Identities = 31/76 (40%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 2 QAEGQGTGGSTGD--ADGPGGPGIPDGPG--------GNAGGPGEAGATGGRGPRG-AGA 50
Q G G GD PG PG P PG G G PG G G GPRG G
Sbjct: 2358 QKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQ 2417
Query: 51 ARASGPRGGAPRGPHG 66
SG RG A GP G
Sbjct: 2418 PGPSGERGLA--GPPG 2431
Score = 36.6 bits (83), Expect = 0.012
Identities = 26/71 (36%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 7 GTGGSTGDADGPGGPGI-------PDGPGGNAGGPGEAGAT---GGRGPRGAGAARASGP 56
G G G+ PG P + P G G+ G G GAT G RGP G GP
Sbjct: 1528 GRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPGP 1587
Query: 57 RGG-APRGPHG 66
+G RGP G
Sbjct: 1588 KGDPGDRGPIG 1598
Score = 36.6 bits (83), Expect = 0.012
Identities = 26/71 (36%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEA--GATGGRGPRGAGAARASGPRGGAP 61
+G G G+ PG GP P G G G PG+ G GG GP+G S G P
Sbjct: 1868 EGRDGPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLP 1927
Query: 62 --RGPHGGAAS 70
RG G S
Sbjct: 1928 GERGLRGEPGS 1938
Score = 36.2 bits (82), Expect = 0.016
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
G G +G PG GP P+G G AG PG G G RG +G SGP G
Sbjct: 1776 GLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPG--PSGPPG 1827
Score = 36.2 bits (82), Expect = 0.016
Identities = 24/63 (38%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRG 63
G G+ GD GP G G G G PGE G G GP+G G P P G
Sbjct: 2324 GEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPG 2383
Query: 64 PHG 66
P G
Sbjct: 2384 PPG 2386
Score = 35.8 bits (81), Expect = 0.020
Identities = 26/80 (32%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
+G G G+ GPG GI G G G PG G G GP G + G
Sbjct: 1399 KGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLP 1458
Query: 64 PHGGAASAQDGRCPCGARRP 83
G+ Q R P GA P
Sbjct: 1459 GQPGSPGEQGPRGPPGAIGP 1478
Score = 35.8 bits (81), Expect = 0.020
Identities = 31/81 (38%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRGGAPRGP 64
+G G TG A PG GP G G PG G G GPRG G G G P G
Sbjct: 1594 RGPIGLTGRAGPPGD----SGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEG--PPGD 1647
Query: 65 HG--GAASAQDGRCPCGARRP 83
G G A + R G R P
Sbjct: 1648 PGLPGKAGERGLRGAPGVRGP 1668
Score = 35.8 bits (81), Expect = 0.020
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARAS--GPRG-GAPR 62
+G G G+ G PG GP G+ G PG G G G GA G RG PR
Sbjct: 1672 KGDQGDPGEDGRNGSPG-SSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPR 1730
Query: 63 GPHG 66
GP G
Sbjct: 1731 GPKG 1734
Score = 35.8 bits (81), Expect = 0.020
Identities = 27/77 (35%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 7 GTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
G G GD G PG+ P GP G G PGE G G G G R
Sbjct: 1797 GAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRK 1856
Query: 59 GAPRGPHGGAASAQDGR 75
G +G G AS ++GR
Sbjct: 1857 G-EKGDSG--ASGREGR 1870
Score = 35.8 bits (81), Expect = 0.020
Identities = 25/75 (33%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 7 GTGGSTGDADGPGGPGIP-----DGPGGNAGGPGEAGATGGRGPRG-------AGAARAS 54
G G G+ PG PG DG G+ G PG G G GP+G G A
Sbjct: 2245 GLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVG 2304
Query: 55 GPRGGAPRGPHGGAA 69
P +G GG A
Sbjct: 2305 LPGAKGEKGAPGGLA 2319
Score = 35.4 bits (80), Expect = 0.027
Identities = 28/69 (40%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 6 QGTGGSTGDADGPGGPGI-----PDG-PG--GNAGGPGEAGATGGRGPRGAGAARASGPR 57
+G G G PG PG P+G PG G G PG G G GP GA +GP
Sbjct: 2140 RGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGP--PGAPGLAGPA 2197
Query: 58 GGAPRGPHG 66
G P+GP G
Sbjct: 2198 G--PQGPSG 2204
Score = 35.0 bits (79), Expect = 0.035
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 13 GDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-----GAPRGP 64
G PG G+ GP G+ G PG GA G +GP G+A A G RG G P P
Sbjct: 1254 GQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGP--PGSATAKGERGFPGADGRPGSP 1310
Score = 35.0 bits (79), Expect = 0.035
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAA--RASGPRGG---- 59
+G G G +GP G P G G G G+ G+ G +G +G A GPRG
Sbjct: 2480 RGEDGRPGQ-EGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDM 2538
Query: 60 APRGPHG 66
RGP G
Sbjct: 2539 GERGPRG 2545
Score = 34.3 bits (77), Expect = 0.059
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPG------EAGATGGRGPRGAGAARASGPRGGA 60
G G GD+ G G DGP G G PG G G GP G G P G
Sbjct: 1854 GRKGEKGDSGASGREG-RDGPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGV--PGGTG 1910
Query: 61 PRGPHGGAASAQDGRCP 77
P+G G S + P
Sbjct: 1911 PKGDRGETGSKGEQGLP 1927
Score = 33.9 bits (76), Expect = 0.077
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 27 PGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGPHGGAASAQDGRCPCGARRPDS 85
P G G PGE G G GP G G +G G P+GP G A + + P RP S
Sbjct: 1252 PKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPG--PQGPPGSATAKGERGFPGADGRPGS 1309
Score = 33.5 bits (75), Expect = 0.10
Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Query: 7 GTGGSTGDADGPGGPGI----PDGPGGNAGGPGEAGATGGRGPRG-------AGAARASG 55
G G+TG G PG+ GP G+ G G G TG GP G G G
Sbjct: 1563 GPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPG 1622
Query: 56 PRGGAPRGPHG 66
P G P GP G
Sbjct: 1623 PPG--PVGPRG 1631
Score = 33.1 bits (74), Expect = 0.13
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGA----- 60
+G G G G PG +GP G G PG G G +G G+A G +G +
Sbjct: 2471 RGERGEPGIRGEDGRPG-QEGPRGLTGPPGSRGERGEKG--DVGSAGLKGDKGDSAVILG 2527
Query: 61 PRGPHG 66
P GP G
Sbjct: 2528 PPGPRG 2533
Score = 33.1 bits (74), Expect = 0.13
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 17/88 (19%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPRGG 59
G G GD+ GP P G G+ G G G G +GPRG G+ G +G
Sbjct: 2514 GLKGDKGDSAVILGPPGPRGAKGDMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGS 2573
Query: 60 A----------PRGPHGGAASAQDGRCP 77
A P+G G A D P
Sbjct: 2574 AGLPGLRGLLGPQGQPGAAGIPGDPGSP 2601
Score = 33.1 bits (74), Expect = 0.13
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
G G G PG GIP G+ G PG+ G G RG + G GPRG
Sbjct: 2578 GLRGLLGPQGQPGAAGIP----GDPGSPGKDGVPGIRGEK--GDVGFMGPRG 2623
Score = 32.7 bits (73), Expect = 0.17
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
+G G +G+ PG G P G G G G+ G G +GP G A G RG P GP
Sbjct: 1978 RGPKGDSGEQGPPGKEG-PIGFPGERGLKGDRGDPGPQGPPGL----ALGERG--PPGPS 2030
Query: 66 G 66
G
Sbjct: 2031 G 2031
Score = 31.6 bits (70), Expect = 0.38
Identities = 23/56 (41%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 14 DADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPRG-GAPRGPHG 66
D GPG G PG G G PG G G +G RG + G RG PRG G
Sbjct: 2097 DEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIK--GDRGEPGPRGQDG 2150
Score = 31.2 bits (69), Expect = 0.50
Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 2 QAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG 58
+ E GG GD G G G G G GEAG G G G G A GP+G
Sbjct: 2309 KGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKG 2366
Score = 30.8 bits (68), Expect = 0.66
Identities = 22/68 (32%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGP--------RGAGAARASGPRG 58
G G GD PG G P G G PG +G G G R G A P
Sbjct: 2000 GERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGE 2059
Query: 59 GAPRGPHG 66
RG G
Sbjct: 2060 RGERGEKG 2067
Score = 30.0 bits (66), Expect = 1.1
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 23 IPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-APRGPHGGAASAQDGRCPCG 79
+P+ G G GE G G GP G G G RG P+GP G A + P G
Sbjct: 1973 VPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSG 2031
Score = 29.3 bits (64), Expect = 1.9
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 18/92 (19%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGE-----------AGATGGRGPRGAGAARAS 54
+G G G+ G PG+P G G PG G +G +GP G A+
Sbjct: 2063 RGEKGERGEQGRDGPPGLP----GTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGE 2118
Query: 55 GPRGGAPRGPHG--GAASAQDGRCPCGARRPD 84
P +GP G G + R G R D
Sbjct: 2119 -PGSNGDQGPKGDRGVPGIKGDRGEPGPRGQD 2149
Score = 28.9 bits (63), Expect = 2.5
Identities = 25/92 (27%), Positives = 29/92 (31%), Gaps = 21/92 (22%)
Query: 4 EGQ-GTGGSTGDADGPGGPGIPD--------------------GPGGNAGGPGEAGATGG 42
+GQ G G GD PG G+P G G G GE G G
Sbjct: 2586 QGQPGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDGEKGDKGE 2645
Query: 43 RGPRGAGAARASGPRGGAPRGPHGGAASAQDG 74
GP G G P P A ++G
Sbjct: 2646 AGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEG 2677
Score = 28.5 bits (62), Expect = 3.3
Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 7 GTGGSTGDA--------DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
G G+ GD DG GP +G G+ G GE G G G G +
Sbjct: 2530 GPRGAKGDMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQP 2589
Query: 59 GAPRGPHGGAASAQDG 74
GA P + +DG
Sbjct: 2590 GAAGIPGDPGSPGKDG 2605
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 49.3 bits (116), Expect = 2e-06
Identities = 31/74 (41%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
Query: 2 QAEGQGTGGSTGDADGPGGPGIP--------DGPGGNAGGPGEAGATGGRGPRGAGAARA 53
+A G+ G +GD PG PG P +G G G PGE G G RGPRG R
Sbjct: 381 EAGRPGSSGPSGDEGQPGEPGPPGEKGEAGDEGNPGPDGAPGERGGPGERGPRGTPGTR- 439
Query: 54 SGPRGG-APRGPHG 66
GPRG GP G
Sbjct: 440 -GPRGDPGEAGPQG 452
Score = 43.1 bits (100), Expect = 1e-04
Identities = 29/64 (45%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-APR 62
GT G GD GP G +GP G G PGEAG G +G RG G + G RG P
Sbjct: 437 GTRGPRGDPGEAGPQGDQGREGPVGVPGDPGEAGPIGPKGYRGDEGPPGSEGARGAPGPA 496
Query: 63 GPHG 66
GP G
Sbjct: 497 GPPG 500
Score = 42.4 bits (98), Expect = 2e-04
Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGG-A 60
+G G+ G+A PG GP G+ G PGE G G +G G G A G RGG
Sbjct: 373 KGEPGADGEAGRPGS----SGPSGDEGQPGEPGPPGEKGEAGDEGNPGPDGAPGERGGPG 428
Query: 61 PRGPHG 66
RGP G
Sbjct: 429 ERGPRG 434
Score = 39.7 bits (91), Expect = 0.001
Identities = 31/84 (36%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRG-------PRGAGAARASGPR 57
G G+ G+ GPG GP G G G PGEAG G +G P G A GP+
Sbjct: 416 GPDGAPGERGGPGERGPRGTPGTRGPRGDPGEAGPQGDQGREGPVGVPGDPGEAGPIGPK 475
Query: 58 GGAPRGPHG--GAASAQDGRCPCG 79
G RG G G+ A+ P G
Sbjct: 476 G--YRGDEGPPGSEGARGAPGPAG 497
Score = 34.7 bits (78), Expect = 0.045
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG 47
G G G+A PG PG P G G G G G G RGP+G
Sbjct: 275 GLPGEKGEAGDPGRPGDLGPVGYQGMKGEKGSRGEKGSRGPKG 317
Score = 32.7 bits (73), Expect = 0.17
Identities = 28/82 (34%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 7 GTGGSTG--DADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G GS G GP GP G G G GE GA G G G+ + G P GP
Sbjct: 344 GCKGSPGFDGIQGPPGPKGDPGAFGLKGEKGEPGADGEAGRPGSSGPSGDEGQPGEP-GP 402
Query: 65 HGGAASAQDGRCPCGARRPDSR 86
G A D P P R
Sbjct: 403 PGEKGEAGDEGNPGPDGAPGER 424
Score = 32.3 bits (72), Expect = 0.23
Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 24/102 (23%)
Query: 6 QGTGGSTG--DADGPGG-PGIP--------DGPGGNA--------GGPGEAGATGGRGPR 46
+G GS G A GP G PG P DGP GN G PG GA G G +
Sbjct: 481 EGPPGSEGARGAPGPAGPPGDPGLMGERGEDGPAGNGTEGFPGFPGYPGNRGAPGINGTK 540
Query: 47 GAGAARASGPRGGAPRGPHG-----GAASAQDGRCPCGARRP 83
G + G P + G A+ R P G + P
Sbjct: 541 GYPGLKGDEGEAGDPGDDNNDIAPRGVKGAKGYRGPEGPQGP 582
Score = 30.4 bits (67), Expect = 0.86
Identities = 26/76 (34%), Positives = 27/76 (35%), Gaps = 22/76 (28%)
Query: 5 GQGTGGSTGDADGPGGPGIPD-----------GPGGNAGGPGE----------AGATGGR 43
G GT G G PG G P G G AG PG+ GA G R
Sbjct: 515 GNGTEGFPGFPGYPGNRGAPGINGTKGYPGLKGDEGEAGDPGDDNNDIAPRGVKGAKGYR 574
Query: 44 GPRG-AGAARASGPRG 58
GP G G GP G
Sbjct: 575 GPEGPQGPPGHQGPPG 590
Score = 29.3 bits (64), Expect = 1.9
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-----G 59
+G G G G PG+P G G PG G G GP+G GA G +G G
Sbjct: 325 RGIDGVDGVKGEMGYPGLP----GCKGSPGFDGIQGPPGPKGDPGAFGLKGEKGEPGADG 380
Query: 60 APRGPHGGAASAQDGR 75
P S +G+
Sbjct: 381 EAGRPGSSGPSGDEGQ 396
>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
sapiens]
Length = 2971
Score = 48.1 bits (113), Expect = 4e-06
Identities = 39/100 (39%), Positives = 44/100 (44%), Gaps = 23/100 (23%)
Query: 6 QGTGGSTGDADGPGGPGIP--------DGPGGNAGGPGEAGATGGRGPRGA-GAARASGP 56
+G G+ G+ GPG PG GP G AG PG G G GPRG+ GAA A G
Sbjct: 1997 RGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGE 2056
Query: 57 RG--------GAP--RGPHGGAASAQDGRCPCGARRPDSR 86
RG G P GP GG + R P G D R
Sbjct: 2057 RGRTGPLGRKGEPGEPGPKGGIGN----RGPRGETGDDGR 2092
Score = 44.7 bits (104), Expect = 4e-05
Identities = 32/92 (34%), Positives = 39/92 (42%), Gaps = 18/92 (19%)
Query: 4 EGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGG 59
+G G+ G G G PG P GP GN G PG G TG +G RG +G G +G
Sbjct: 2093 DGVGSEGRRGKKGERGFPGYP-GPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGD 2151
Query: 60 ----APRGPHGGAASAQD---------GRCPC 78
P GP G + D +CPC
Sbjct: 2152 PGYPGPAGPKGNRGDSIDQCALIQSIKDKCPC 2183
Score = 44.3 bits (103), Expect = 6e-05
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPR 62
++ +G G TGD G G+P G G GGPGE G GG G RG A+ G +GG +
Sbjct: 1958 SQERGPKGETGDL---GPMGVP-GRDGVPGGPGETGKNGGFGRRGPPGAK--GNKGGPGQ 2011
Query: 63 GPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSS 98
G + + P G P + + I+ P S
Sbjct: 2012 PGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGS 2047
Score = 37.0 bits (84), Expect = 0.009
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG--GA 60
A G G TG G PG P GP G G G G TG G G G+ G +G G
Sbjct: 2051 AGAPGERGRTGPLGRKGEPGEP-GPKGGIGNRGPRGETGDDGRDGVGSEGRRGKKGERGF 2109
Query: 61 P--RGPHG 66
P GP G
Sbjct: 2110 PGYPGPKG 2117
Score = 33.5 bits (75), Expect = 0.10
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
+G G G+ G G P PG ++ G G TG GP G R P G G +
Sbjct: 1933 KGPRGEKGERGDVGIRGDPGNPGQDSQERGPKGETGDLGPMGV-PGRDGVPGGPGETGKN 1991
Query: 66 GG 67
GG
Sbjct: 1992 GG 1993
Score = 32.3 bits (72), Expect = 0.23
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAAR 52
G G G G GIP G G G PG+ G G RGP G +
Sbjct: 1832 GQRGDRGPIGSIGPKGIP-GEDGYRGYPGDEGGPGERGPPGVNGTQ 1876
Score = 32.0 bits (71), Expect = 0.29
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 2 QAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPR 57
Q +G GS G PG G PG + GGPGE G G G +G G G R
Sbjct: 1833 QRGDRGPIGSIGPKGIPGEDGYRGYPG-DEGGPGERGPPGVNGTQGFQGCPGQRGVKGSR 1891
Query: 58 G 58
G
Sbjct: 1892 G 1892
Score = 30.8 bits (68), Expect = 0.66
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 7 GTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G G+ DG G G G++G G G G +GPRG R G P P
Sbjct: 1895 GEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNP 1954
>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
sapiens]
Length = 3177
Score = 48.1 bits (113), Expect = 4e-06
Identities = 39/100 (39%), Positives = 44/100 (44%), Gaps = 23/100 (23%)
Query: 6 QGTGGSTGDADGPGGPGIP--------DGPGGNAGGPGEAGATGGRGPRGA-GAARASGP 56
+G G+ G+ GPG PG GP G AG PG G G GPRG+ GAA A G
Sbjct: 2203 RGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGE 2262
Query: 57 RG--------GAP--RGPHGGAASAQDGRCPCGARRPDSR 86
RG G P GP GG + R P G D R
Sbjct: 2263 RGRTGPLGRKGEPGEPGPKGGIGN----RGPRGETGDDGR 2298
Score = 44.7 bits (104), Expect = 4e-05
Identities = 32/92 (34%), Positives = 39/92 (42%), Gaps = 18/92 (19%)
Query: 4 EGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGG 59
+G G+ G G G PG P GP GN G PG G TG +G RG +G G +G
Sbjct: 2299 DGVGSEGRRGKKGERGFPGYP-GPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGD 2357
Query: 60 ----APRGPHGGAASAQD---------GRCPC 78
P GP G + D +CPC
Sbjct: 2358 PGYPGPAGPKGNRGDSIDQCALIQSIKDKCPC 2389
Score = 44.3 bits (103), Expect = 6e-05
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPR 62
++ +G G TGD G G+P G G GGPGE G GG G RG A+ G +GG +
Sbjct: 2164 SQERGPKGETGDL---GPMGVP-GRDGVPGGPGETGKNGGFGRRGPPGAK--GNKGGPGQ 2217
Query: 63 GPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSS 98
G + + P G P + + I+ P S
Sbjct: 2218 PGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGS 2253
Score = 37.0 bits (84), Expect = 0.009
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG--GA 60
A G G TG G PG P GP G G G G TG G G G+ G +G G
Sbjct: 2257 AGAPGERGRTGPLGRKGEPGEP-GPKGGIGNRGPRGETGDDGRDGVGSEGRRGKKGERGF 2315
Query: 61 P--RGPHG 66
P GP G
Sbjct: 2316 PGYPGPKG 2323
Score = 33.5 bits (75), Expect = 0.10
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
+G G G+ G G P PG ++ G G TG GP G R P G G +
Sbjct: 2139 KGPRGEKGERGDVGIRGDPGNPGQDSQERGPKGETGDLGPMGV-PGRDGVPGGPGETGKN 2197
Query: 66 GG 67
GG
Sbjct: 2198 GG 2199
Score = 32.3 bits (72), Expect = 0.23
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAAR 52
G G G G GIP G G G PG+ G G RGP G +
Sbjct: 2038 GQRGDRGPIGSIGPKGIP-GEDGYRGYPGDEGGPGERGPPGVNGTQ 2082
Score = 32.0 bits (71), Expect = 0.29
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 2 QAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPR 57
Q +G GS G PG G PG + GGPGE G G G +G G G R
Sbjct: 2039 QRGDRGPIGSIGPKGIPGEDGYRGYPG-DEGGPGERGPPGVNGTQGFQGCPGQRGVKGSR 2097
Query: 58 G 58
G
Sbjct: 2098 G 2098
Score = 30.8 bits (68), Expect = 0.66
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 7 GTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G G+ DG G G G++G G G G +GPRG R G P P
Sbjct: 2101 GEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNP 2160
>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
sapiens]
Length = 2570
Score = 48.1 bits (113), Expect = 4e-06
Identities = 39/100 (39%), Positives = 44/100 (44%), Gaps = 23/100 (23%)
Query: 6 QGTGGSTGDADGPGGPGIP--------DGPGGNAGGPGEAGATGGRGPRGA-GAARASGP 56
+G G+ G+ GPG PG GP G AG PG G G GPRG+ GAA A G
Sbjct: 1596 RGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGE 1655
Query: 57 RG--------GAP--RGPHGGAASAQDGRCPCGARRPDSR 86
RG G P GP GG + R P G D R
Sbjct: 1656 RGRTGPLGRKGEPGEPGPKGGIGN----RGPRGETGDDGR 1691
Score = 44.7 bits (104), Expect = 4e-05
Identities = 32/92 (34%), Positives = 39/92 (42%), Gaps = 18/92 (19%)
Query: 4 EGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRGG 59
+G G+ G G G PG P GP GN G PG G TG +G RG +G G +G
Sbjct: 1692 DGVGSEGRRGKKGERGFPGYP-GPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGD 1750
Query: 60 ----APRGPHGGAASAQD---------GRCPC 78
P GP G + D +CPC
Sbjct: 1751 PGYPGPAGPKGNRGDSIDQCALIQSIKDKCPC 1782
Score = 44.3 bits (103), Expect = 6e-05
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPR 62
++ +G G TGD G G+P G G GGPGE G GG G RG A+ G +GG +
Sbjct: 1557 SQERGPKGETGDL---GPMGVP-GRDGVPGGPGETGKNGGFGRRGPPGAK--GNKGGPGQ 1610
Query: 63 GPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSS 98
G + + P G P + + I+ P S
Sbjct: 1611 PGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGS 1646
Score = 37.0 bits (84), Expect = 0.009
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG--GA 60
A G G TG G PG P GP G G G G TG G G G+ G +G G
Sbjct: 1650 AGAPGERGRTGPLGRKGEPGEP-GPKGGIGNRGPRGETGDDGRDGVGSEGRRGKKGERGF 1708
Query: 61 P--RGPHG 66
P GP G
Sbjct: 1709 PGYPGPKG 1716
Score = 33.5 bits (75), Expect = 0.10
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
+G G G+ G G P PG ++ G G TG GP G R P G G +
Sbjct: 1532 KGPRGEKGERGDVGIRGDPGNPGQDSQERGPKGETGDLGPMGV-PGRDGVPGGPGETGKN 1590
Query: 66 GG 67
GG
Sbjct: 1591 GG 1592
Score = 32.3 bits (72), Expect = 0.23
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAAR 52
G G G G GIP G G G PG+ G G RGP G +
Sbjct: 1431 GQRGDRGPIGSIGPKGIP-GEDGYRGYPGDEGGPGERGPPGVNGTQ 1475
Score = 32.0 bits (71), Expect = 0.29
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 2 QAEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPR 57
Q +G GS G PG G PG + GGPGE G G G +G G G R
Sbjct: 1432 QRGDRGPIGSIGPKGIPGEDGYRGYPG-DEGGPGERGPPGVNGTQGFQGCPGQRGVKGSR 1490
Query: 58 G 58
G
Sbjct: 1491 G 1491
Score = 30.8 bits (68), Expect = 0.66
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 7 GTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G G+ DG G G G++G G G G +GPRG R G P P
Sbjct: 1494 GEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNP 1553
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 47.8 bits (112), Expect = 5e-06
Identities = 37/91 (40%), Positives = 43/91 (47%), Gaps = 16/91 (17%)
Query: 7 GTGGSTGD-----------ADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARAS 54
G G+TGD ++GP G P+GP GN G PG GA G RG RG G A
Sbjct: 1020 GPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLP 1079
Query: 55 GPRG--GAPRGPHGGAASAQDGRCPCGARRP 83
G +G G P GP G A P G+R P
Sbjct: 1080 GSQGAPGTP-GPVGAPGDAGQRGDP-GSRGP 1108
Score = 46.2 bits (108), Expect = 2e-05
Identities = 30/70 (42%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRGGAPRG 63
G GG GD PG PG P GP G G PGE G G G P G A GP G P+G
Sbjct: 687 GEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDG--PKG 744
Query: 64 PHGGAASAQD 73
G + + D
Sbjct: 745 SPGPSGTPGD 754
Score = 44.7 bits (104), Expect = 4e-05
Identities = 28/68 (41%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 6 QGTGGSTG--DADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG---- 58
+GT G+ G GP GP P GP G G PG G G G RG G+ +GP G
Sbjct: 788 EGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGF 847
Query: 59 GAPRGPHG 66
P+GP G
Sbjct: 848 AGPQGPDG 855
Score = 44.7 bits (104), Expect = 4e-05
Identities = 29/63 (46%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG-GAPRG 63
QG+ G G GP GP P GP G G PG G G G RG+ G A GP G P G
Sbjct: 1163 QGSAGIPGPF-GPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPG 1221
Query: 64 PHG 66
P G
Sbjct: 1222 PPG 1224
Score = 43.9 bits (102), Expect = 7e-05
Identities = 27/63 (42%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG-GAPRG 63
+G G G G PG+P GP G G G GATG +GP G G ++GP G P G
Sbjct: 992 RGIVGMPGQRGERGMPGLP-GPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEG 1050
Query: 64 PHG 66
P G
Sbjct: 1051 PAG 1053
Score = 43.1 bits (100), Expect = 1e-04
Identities = 28/70 (40%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----------AGAARASGP 56
GT G+ G A GP G GP G+AG PG G G GP+G G +GP
Sbjct: 423 GTDGTPG-AKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGP 481
Query: 57 RGGAPRGPHG 66
+G GPHG
Sbjct: 482 KG--EPGPHG 489
Score = 43.1 bits (100), Expect = 1e-04
Identities = 38/99 (38%), Positives = 41/99 (41%), Gaps = 21/99 (21%)
Query: 6 QGTGGSTGDADGPGGPGIPD-----------GPGGNAGGPGEAGATGGRGPRG-AGAARA 53
QG+ G G PG PG+P GP G G G G G RGPRG G
Sbjct: 455 QGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGP 514
Query: 54 SGPRG--GAP--RGPHG-----GAASAQDGRCPCGARRP 83
GP G GAP RG G G AQ R P G+ P
Sbjct: 515 PGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGP 553
Score = 42.4 bits (98), Expect = 2e-04
Identities = 31/70 (44%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 6 QGTGGSTGDADGPGGPG------IPDGPG--GNAGGPGEAGATGGRGPRGAGAARA-SGP 56
QG G G PG PG IP G GN G GEAG TG RGP G R +GP
Sbjct: 350 QGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGP 409
Query: 57 RG--GAPRGP 64
G G+P P
Sbjct: 410 PGPVGSPGLP 419
Score = 42.0 bits (97), Expect = 3e-04
Identities = 29/63 (46%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 7 GTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRGA-GAARASGPRGGAPRG 63
G GS G PG G+P G G+ G PGEAG G G RGA G GP G P G
Sbjct: 600 GPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSG--PVG 657
Query: 64 PHG 66
P G
Sbjct: 658 PPG 660
Score = 41.6 bits (96), Expect = 4e-04
Identities = 30/82 (36%), Positives = 33/82 (40%), Gaps = 22/82 (26%)
Query: 7 GTGGSTGDADGPGGPGIP-----------DGPGGNAGGPGEAG---------ATGGRGPR 46
G GS G PG PG+P +GP G G PG G A G GPR
Sbjct: 279 GFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPR 338
Query: 47 GAGAARAS-GPRGG-APRGPHG 66
G R GP+G RG HG
Sbjct: 339 GMPGERGRLGPQGAPGQRGAHG 360
Score = 41.6 bits (96), Expect = 4e-04
Identities = 30/76 (39%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARAS-------GPR 57
G+GT G G PG G GP G AG PG AG G G G R G R
Sbjct: 898 GRGTQGPPGATGFPGSAG-RVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDR 956
Query: 58 GGAPRGPHGGAASAQD 73
G P GP GG D
Sbjct: 957 G--PAGPPGGPGDKGD 970
Score = 41.6 bits (96), Expect = 4e-04
Identities = 28/70 (40%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRGGAPRGPH 65
G GS G PG G P GP G G PG+ G G RG G+ G GP G P GP
Sbjct: 909 GFPGSAGRVGPPGPAGAP-GPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGP-AGPPGGPG 966
Query: 66 GGAASAQDGR 75
+DG+
Sbjct: 967 DKGDPGEDGQ 976
Score = 41.6 bits (96), Expect = 4e-04
Identities = 30/77 (38%), Positives = 31/77 (40%), Gaps = 12/77 (15%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-------AGAARASGPR 57
G G G G+ DG GP P GP G G G G G RG RG AG GP
Sbjct: 964 GPGDKGDPGE-DGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPT 1022
Query: 58 GG----APRGPHGGAAS 70
G P GP G S
Sbjct: 1023 GATGDKGPPGPVGPPGS 1039
Score = 41.6 bits (96), Expect = 4e-04
Identities = 27/61 (44%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGPH 65
G G G PG PG P G G+AG G+ G+ G GP G AG GP+G PRG
Sbjct: 1074 GPAGLPGSQGAPGTPG-PVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQG--PRGDK 1130
Query: 66 G 66
G
Sbjct: 1131 G 1131
Score = 40.8 bits (94), Expect = 6e-04
Identities = 30/77 (38%), Positives = 32/77 (41%), Gaps = 16/77 (20%)
Query: 6 QGTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRG-------------AGA 50
QG G TG PG PG P G G+ G PG+ GA G GPRG G
Sbjct: 668 QGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGL 727
Query: 51 ARASGPRGG-APRGPHG 66
G GG P GP G
Sbjct: 728 PGEKGMAGGHGPDGPKG 744
Score = 40.4 bits (93), Expect = 8e-04
Identities = 32/86 (37%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G GS G+A GP GP GP G G PGE G G +G G A + G P GP G
Sbjct: 315 GAPGSKGEA-GPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPG-PMGPLG 372
Query: 67 --------GAASAQDGRCPCGARRPD 84
G + P GAR P+
Sbjct: 373 IPGSSGFPGNPGMKGEAGPTGARGPE 398
Score = 40.0 bits (92), Expect = 0.001
Identities = 36/94 (38%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 6 QGTGGSTGDADGPGGPGIPDG-PG--GNAGGPGEAGATGGRGPRG-AGAARASGPR---- 57
+G G TG A G GP PDG PG G G PG+ G G GP+G AG+ GP
Sbjct: 836 RGENGPTG-AVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPG 894
Query: 58 ---GGAPRGPHG-----GAASAQDGRCPCGARRP 83
G +GP G G+A P GA P
Sbjct: 895 LKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGP 928
Score = 39.7 bits (91), Expect = 0.001
Identities = 30/77 (38%), Positives = 31/77 (40%), Gaps = 12/77 (15%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----------AGAAR 52
A G G G G G PG GP G G PGE G G GP+G G A
Sbjct: 734 AGGHGPDGPKGSPGPSGTPG-DTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAG 792
Query: 53 ASGPRG-GAPRGPHGGA 68
G RG P GP G A
Sbjct: 793 NDGARGLPGPLGPPGPA 809
Score = 39.3 bits (90), Expect = 0.002
Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-GAPRG 63
G T G G PG+ G G PG AG G +GPRG GP+G PRG
Sbjct: 102 GGNTNFGRGRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPRG-----ERGPKGRPGPRG 156
Query: 64 PHG 66
P G
Sbjct: 157 PQG 159
Score = 39.3 bits (90), Expect = 0.002
Identities = 29/70 (41%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 6 QGTGGSTGDADGPGGPGIPD--------GPGGNAGGPGEAGATGGRG-PRGAGAARASGP 56
QG G G PG PG P GP G G PGE G G G P G A + G
Sbjct: 227 QGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGA 286
Query: 57 RG--GAPRGP 64
RG GAP P
Sbjct: 287 RGFPGAPGLP 296
Score = 39.3 bits (90), Expect = 0.002
Identities = 32/82 (39%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 6 QGTGGSTG--DADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPRGG 59
+G G TG +GP G GP G G PG GA G G GA G+ SGP G
Sbjct: 386 KGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGS 445
Query: 60 APRGPHGGAASAQDGRCPCGAR 81
A GP G+ Q P G R
Sbjct: 446 A--GP-PGSPGPQGSTGPQGIR 464
Score = 39.3 bits (90), Expect = 0.002
Identities = 31/71 (43%), Positives = 34/71 (47%), Gaps = 15/71 (21%)
Query: 7 GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPR 57
G G GDA PG G+ P GP G PG G G +GP GA G+A GP
Sbjct: 864 GEPGQKGDAGSPGPQGLAGSPGPHGPN---GVPGLKGGRGTQGPPGATGFPGSAGRVGPP 920
Query: 58 G--GAPRGPHG 66
G GAP GP G
Sbjct: 921 GPAGAP-GPAG 930
Score = 38.9 bits (89), Expect = 0.002
Identities = 33/95 (34%), Positives = 41/95 (43%), Gaps = 28/95 (29%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGE------AGATGGRGPRG------------- 47
G G TG+ PG G+ GP G+ G PG GA G GP+G
Sbjct: 807 GPAGPTGEKGEPGPRGLV-GPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGE 865
Query: 48 ---AGAARASGPRG--GAPRGPHG--GAASAQDGR 75
G A + GP+G G+P GPHG G + GR
Sbjct: 866 PGQKGDAGSPGPQGLAGSP-GPHGPNGVPGLKGGR 899
Score = 38.9 bits (89), Expect = 0.002
Identities = 28/62 (45%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGP 64
+G G TG PG PG P+G G+AG PG G G GP G +G GP G P GP
Sbjct: 1142 KGHRGFTGLQGLPGPPG-PNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLG--PIGP 1198
Query: 65 HG 66
G
Sbjct: 1199 PG 1200
Score = 38.5 bits (88), Expect = 0.003
Identities = 32/87 (36%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG------- 58
G GS G PG PG DG G G PGE G G G RG GA G +G
Sbjct: 249 GPIGSRGPEGPPGKPG-EDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGL 307
Query: 59 GAPRGPHGGAASAQDG--RCPCGARRP 83
P+G G S + P GA P
Sbjct: 308 EGPKGEVGAPGSKGEAGPTGPMGAMGP 334
Score = 38.5 bits (88), Expect = 0.003
Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG--GA 60
+G G GD GP GP G GN G PG G G +G +G G +SGP+G G
Sbjct: 500 EGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGD 559
Query: 61 PRGP-HGGAASAQDGRCPCGARRPDSRL 87
P P G A+ G + P+ +L
Sbjct: 560 PGRPGEPGLPGARGLTGNPGVQGPEGKL 587
Score = 38.1 bits (87), Expect = 0.004
Identities = 30/64 (46%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG--GAP--R 62
G+ G GD GP GP P GPG + G PGE G G GP G A +G RG G P R
Sbjct: 948 GSHGRVGDR-GPAGP--PGGPG-DKGDPGEDGQPGPDGP--PGPAGTTGQRGIVGMPGQR 1001
Query: 63 GPHG 66
G G
Sbjct: 1002 GERG 1005
Score = 37.7 bits (86), Expect = 0.005
Identities = 27/64 (42%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 4 EGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRGGAPR 62
E G G G G GP P GP G G G AG TG G P G G RG P
Sbjct: 200 EKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRG--PE 257
Query: 63 GPHG 66
GP G
Sbjct: 258 GPPG 261
Score = 37.7 bits (86), Expect = 0.005
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 21/75 (28%)
Query: 6 QGTGGSTGDADGPGGPGIPD-----------GPGGN---AGGPGEAGATGGRGPRGAGAA 51
QG G TG G PG+P GP G+ +G PG AG G GP+G
Sbjct: 401 QGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQG---- 456
Query: 52 RASGPRG--GAPRGP 64
++GP+G G P P
Sbjct: 457 -STGPQGIRGQPGDP 470
Score = 37.7 bits (86), Expect = 0.005
Identities = 28/69 (40%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G+ G+ GP G P G G+ G PGE G G RG G + GP G GP G
Sbjct: 537 GPKGAQGER-GPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQ--GPEG--KLGPLG 591
Query: 67 GAASAQDGR 75
A +DGR
Sbjct: 592 --APGEDGR 598
Score = 37.4 bits (85), Expect = 0.007
Identities = 26/67 (38%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRG-AGAARASGPRGG 59
A G G G+ G PG+ PG G G G AG GG G +G G GP G
Sbjct: 923 AGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDG- 981
Query: 60 APRGPHG 66
P GP G
Sbjct: 982 -PPGPAG 987
Score = 37.0 bits (84), Expect = 0.009
Identities = 32/93 (34%), Positives = 38/93 (40%), Gaps = 20/93 (21%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----------AGAARASG 55
QG G G PG G P GP G+ G G+ G+ G GP+G AG A G
Sbjct: 581 QGPEGKLGPLGAPGEDGRP-GPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPG 639
Query: 56 PRGG-------APRGPHG--GAASAQDGRCPCG 79
RG P GP G G A + + P G
Sbjct: 640 QRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPG 672
Score = 37.0 bits (84), Expect = 0.009
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G G G+ GG G PDGP G+ G G G TG G +G R G P+G G
Sbjct: 723 GITGLPGEKGMAGGHG-PDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPG-PKGDRG 780
Query: 67 G 67
G
Sbjct: 781 G 781
Score = 37.0 bits (84), Expect = 0.009
Identities = 27/81 (33%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
+G G G A PG G P G G+ G PG G G GP G G P G
Sbjct: 1004 RGMPGLPGPAGTPGKVG-PTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTP-GRD 1061
Query: 66 GGAASAQDGRCPCGARRPDSR 86
G D P A P S+
Sbjct: 1062 GAVGERGDRGDPGPAGLPGSQ 1082
Score = 36.6 bits (83), Expect = 0.012
Identities = 26/67 (38%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 4 EGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA--GAARASGPRGGAP 61
EG T DG G G G AG PG GA G GP GA A + P P
Sbjct: 1049 EGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGP 1108
Query: 62 RGPHGGA 68
GP G A
Sbjct: 1109 IGPPGRA 1115
Score = 36.2 bits (82), Expect = 0.016
Identities = 30/78 (38%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 7 GTGGSTGDADGPGGPGI--PDGPGGNAGG---PGEAGATGGRGPRG-AGAARASGPRG-- 58
G G+ GDA G PG P GP G AG PG G G +G G G G RG
Sbjct: 1089 GPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFT 1148
Query: 59 -----GAPRGPHGGAASA 71
P GP+G SA
Sbjct: 1149 GLQGLPGPPGPNGEQGSA 1166
Score = 35.8 bits (81), Expect = 0.020
Identities = 28/92 (30%), Positives = 34/92 (36%), Gaps = 15/92 (16%)
Query: 7 GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRGA----------GAA 51
G G G + PG PG+ P G G G G+ G TG GP G+ G
Sbjct: 369 GPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTP 428
Query: 52 RASGPRGGAPRGPHGGAASAQDGRCPCGARRP 83
A GP G G+A P G+ P
Sbjct: 429 GAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGP 460
Score = 34.3 bits (77), Expect = 0.059
Identities = 27/77 (35%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG----GA 60
G G G+A PG G P DG G +G G G G RG +G GP G
Sbjct: 627 GKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQG-----PPGPTGFQGLPG 681
Query: 61 PRGPHGGAASAQDGRCP 77
P GP G D P
Sbjct: 682 PPGPPGEGGKPGDQGVP 698
Score = 34.3 bits (77), Expect = 0.059
Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 2 QAEGQGTGGSTG--DADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG 59
+A G G G DG GP P GP G AG GE G G G +G GG
Sbjct: 631 EAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGG 690
Query: 60 AP 61
P
Sbjct: 691 KP 692
Score = 33.1 bits (74), Expect = 0.13
Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 5 GQGTGGSTGDAD---------GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASG 55
G+G G G+ G GP P G G G G G G RGP+G
Sbjct: 108 GRGRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVP 167
Query: 56 PRGGAPRGPHGGAASAQDG 74
+ GAP P + DG
Sbjct: 168 GQPGAPGPPGHPSHPGPDG 186
Score = 33.1 bits (74), Expect = 0.13
Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G+ G A G PG PG G+ G G G G GP G + G P GP
Sbjct: 921 GPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQP-GP 979
Query: 65 HG 66
G
Sbjct: 980 DG 981
Score = 32.7 bits (73), Expect = 0.17
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G GS GD PG PG+P G G G G +GP G + G P GP G
Sbjct: 552 GPKGSQGDPGRPGEPGLP-------GARGLTGNPGVQGPEGKLGPLGAPGEDGRP-GPPG 603
Score = 32.7 bits (73), Expect = 0.17
Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 12/72 (16%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG------ 59
+G G G+ GP GP P G G G G G TG +G G G + G
Sbjct: 641 RGAPGKDGEV-GPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPG 699
Query: 60 -----APRGPHG 66
P GP G
Sbjct: 700 DPGAVGPLGPRG 711
Score = 29.6 bits (65), Expect = 1.5
Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGG 42
G GS G+A G PG P GP G G PG A G
Sbjct: 1200 GVRGSVGEAGPEGPPGEP-GPPGPPGPPGHLTAALG 1234
Score = 28.9 bits (63), Expect = 2.5
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 7 GTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRG 47
G G+ G G PG+ G G G PGE G G GP G
Sbjct: 1185 GKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPG 1227
Score = 28.1 bits (61), Expect = 4.3
Identities = 25/82 (30%), Positives = 29/82 (35%), Gaps = 15/82 (18%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNA---------GGPGEAGATGGRGPRGAGAARASGPR 57
G G G PG PG P PG + G E G + G+ GPR
Sbjct: 162 GEPGVPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPR 221
Query: 58 GGAPRGPHGGAASAQDGRCPCG 79
G P+G G Q G P G
Sbjct: 222 G--PQGLQG----QQGGAGPTG 237
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 47.8 bits (112), Expect = 5e-06
Identities = 25/53 (47%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
QG G G PG PG+P G G AG GEAG G RGP G GP+G
Sbjct: 500 QGPKGEPGSIGLPGQPGVP-GEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKG 551
Score = 45.1 bits (105), Expect = 3e-05
Identities = 34/95 (35%), Positives = 39/95 (41%), Gaps = 12/95 (12%)
Query: 1 MQAEGQGTGGSTGDADGPGGPGIPDGPGGNA--GGPGEAGATGGRGPRGAGAARASGPRG 58
M G G+ G G GP GP P GP G G GE G G GPRG GP+G
Sbjct: 446 MGIPGIGSQGEQG-IQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTGPRGPVGIGVQGPKG 504
Query: 59 --------GAPRGPHGGAASAQDGRCPC-GARRPD 84
G P P A+ + G GAR P+
Sbjct: 505 EPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPE 539
Score = 40.8 bits (94), Expect = 6e-04
Identities = 30/74 (40%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG-----GA 60
+G G G PG PG P G GN G PG G G G G G G RG GA
Sbjct: 318 KGPRGIQGITGPPGDPG-PKGFQGNKGEPGPPGPYGSPGAPGIGQQGIKGERGQEGRPGA 376
Query: 61 PRGPHGGAASAQDG 74
P GP G Q G
Sbjct: 377 P-GPIGVGEPGQPG 389
Score = 39.7 bits (91), Expect = 0.001
Identities = 25/61 (40%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
+G G G PG PGI G G G G+ G G GP G G GPRG P G
Sbjct: 342 KGEPGPPGPYGSPGAPGI--GQQGIKGERGQEGRPGAPGPIGVGEPGQPGPRG--PEGVP 397
Query: 66 G 66
G
Sbjct: 398 G 398
Score = 38.5 bits (88), Expect = 0.003
Identities = 36/114 (31%), Positives = 43/114 (37%), Gaps = 19/114 (16%)
Query: 5 GQGTGGSTGDAD--GPGGPGIPDGPG-----------GNAGGPGEAGATGGRGPRG---- 47
GQG GS G+ GP GP P G G G G PG G G G +G
Sbjct: 473 GQGLPGSKGEVGQMGPTGPRGPVGIGVQGPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGL 532
Query: 48 AGAARASGPRGGAPRGPHG--GAASAQDGRCPCGARRPDSRLLQLHITMPFSSP 99
GA GP G GP G G ++ + G P+ + I PF P
Sbjct: 533 PGARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRGLPGPEGPKGEPGIMGPFGMP 586
Score = 38.1 bits (87), Expect = 0.004
Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 6 QGTGGSTGDADGPGGPGI-------PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG 58
QG G G PG PG GP G G PGE G G P G + GP G
Sbjct: 362 QGIKGERGQEGRPGAPGPIGVGEPGQPGPRGPEGVPGERGLPGEGFPGPKGEKGSEGPTG 421
Query: 59 GAPRGPHGGAASAQDGRC-PCGARRP 83
P+G G + + G P G + P
Sbjct: 422 --PQGLQGLSIKGEKGDIGPVGPQGP 445
Score = 37.0 bits (84), Expect = 0.009
Identities = 27/71 (38%), Positives = 28/71 (39%), Gaps = 15/71 (21%)
Query: 6 QGTGGSTGDADGPGGPGI-------------PDGPGGNAGGPGEAGATGGRGPRGAGAAR 52
QG G G G PGI P GP G+ GGPG G G G G
Sbjct: 562 QGQRGLPGPEGPKGEPGIMGPFGMPGTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKG 621
Query: 53 ASGPRG--GAP 61
GPRG GAP
Sbjct: 622 VQGPRGPVGAP 632
Score = 37.0 bits (84), Expect = 0.009
Identities = 26/70 (37%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPG-------GNAGGPGEAGATGGRGPRGAGAARASGPR 57
G G G GGPGIP G G G G G G G +G G GPR
Sbjct: 587 GTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQGPRGPVGAPGLKGDGYPGVPGPR 646
Query: 58 G-GAPRGPHG 66
G P GP G
Sbjct: 647 GLPGPPGPMG 656
Score = 36.6 bits (83), Expect = 0.012
Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 4 EGQGTGGSTGDADGPGGPGIPD----GPGGNAGGPGEAGATGGRGPRGAGAARASGPRG- 58
+G G G G PG PG G G G PG G G GPRG G G G
Sbjct: 635 KGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQ 694
Query: 59 ----GAPRGPHGGAASAQDGRCPCGARRP 83
G P P G+ + + P G P
Sbjct: 695 KGLPGPPGPPGYGSQGIKGEQGPQGFPGP 723
Score = 34.7 bits (78), Expect = 0.045
Identities = 26/70 (37%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G GD PG GP P G G G PG+ G G +G +G GP G P G
Sbjct: 301 GKPGIKGDKGSPGPYGPKGPRGIQGITGPPGDPGPKGFQGNKG-----EPGPPG--PYGS 353
Query: 65 HGGAASAQDG 74
G Q G
Sbjct: 354 PGAPGIGQQG 363
Score = 34.7 bits (78), Expect = 0.045
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 20/81 (24%)
Query: 7 GTGGSTGDA--------DGPGGPGIP-----DGPGGNAGGPGEAGATGGRGPRGA----- 48
G G G+A +GP G G P +G G+ G G+ G G GP+G
Sbjct: 522 GAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRGLPGPEGPKGEPGIMG 581
Query: 49 --GAARASGPRGGAPRGPHGG 67
G S P P+G GG
Sbjct: 582 PFGMPGTSIPGPPGPKGDRGG 602
Score = 34.3 bits (77), Expect = 0.059
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Query: 6 QGTGGSTGDAD----GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
+G G+ G+A G GPG G G+ G GE G G +G +G + GP G P
Sbjct: 265 RGPKGNPGNAQKGEAGERGPGGIPGYKGDKGERGECGKPGIKGDKG-----SPGPYG--P 317
Query: 62 RGPHG 66
+GP G
Sbjct: 318 KGPRG 322
Score = 33.9 bits (76), Expect = 0.077
Identities = 21/44 (47%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 18 PGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
PG PG P G GN G GE G G G G A GP GG P
Sbjct: 247 PGDPG-PPGTHGNPGIKGERGPKGNPGNAQKGEAGERGP-GGIP 288
Score = 33.1 bits (74), Expect = 0.13
Identities = 29/99 (29%), Positives = 31/99 (31%), Gaps = 39/99 (39%)
Query: 7 GTGGSTGDADGPGGPGIP-------------DGPGGNAGGPG------------------ 35
G G GD GPG PG GP G G PG
Sbjct: 592 GPPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQGPRGPVGAPGLKGDGYPGVPGPRGLPGP 651
Query: 36 -------EAGATGGRGPRGA-GAARASGPRGGAPRGPHG 66
G TG +G G G SGPRG +GP G
Sbjct: 652 PGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKG 690
Score = 32.7 bits (73), Expect = 0.17
Identities = 28/73 (38%), Positives = 30/73 (41%), Gaps = 20/73 (27%)
Query: 13 GDADGPGGPGIPDGPG-----GNAGGPGEA--GATGGRGPRG-AGAARASGPRG------ 58
GD PG PG PG G G PG A G G RGP G G G RG
Sbjct: 245 GDPGDPGPPGTHGNPGIKGERGPKGNPGNAQKGEAGERGPGGIPGYKGDKGERGECGKPG 304
Query: 59 -----GAPRGPHG 66
G+P GP+G
Sbjct: 305 IKGDKGSP-GPYG 316
Score = 31.6 bits (70), Expect = 0.38
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 19 GGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG--GAASAQDGRC 76
G PG P GP G G PG G RGP+G G G RGP G G + R
Sbjct: 245 GDPGDP-GPPGTHGNPG---IKGERGPKGNPGNAQKGEAG--ERGPGGIPGYKGDKGERG 298
Query: 77 PCG 79
CG
Sbjct: 299 ECG 301
Score = 31.2 bits (69), Expect = 0.50
Identities = 26/70 (37%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 5 GQGTGGSTGDADGPGG-PGIPDGPG--GNAGGPGEAGATGGRGPRGAGAARA----SGPR 57
G G G+ GPGG PG G G G PG G G GP G R +GP
Sbjct: 272 GNAQKGEAGER-GPGGIPGYKGDKGERGECGKPGIKGDKGSPGPYGPKGPRGIQGITGPP 330
Query: 58 GG-APRGPHG 66
G P+G G
Sbjct: 331 GDPGPKGFQG 340
Score = 28.5 bits (62), Expect = 3.3
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG 47
G G G G+ G G G G G PG G G +GP+G
Sbjct: 728 GHGLPGQKGEHGERGDVG-KKGDKGEIGEPGSPGKQGLQGPKG 769
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 47.4 bits (111), Expect = 7e-06
Identities = 31/65 (47%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPRG-GAP 61
G GS GD G PG P GP G G PG +GA G GPRG G GPRG P
Sbjct: 1165 GQKGSKGDKGEQGPPG-PTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGP 1223
Query: 62 RGPHG 66
GP G
Sbjct: 1224 PGPVG 1228
Score = 47.0 bits (110), Expect = 9e-06
Identities = 30/64 (46%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
QG+ G G+ GP GP P GP G G PG GA G GP G G A GP G P
Sbjct: 1509 QGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPGPPG--PP 1566
Query: 63 GPHG 66
GP G
Sbjct: 1567 GPPG 1570
Score = 46.6 bits (109), Expect = 1e-05
Identities = 29/62 (46%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-GAARASGPRG-GAPRGP 64
G G TG G PG P GP G G PG AG G +G +GA G A GP G P GP
Sbjct: 1369 GEPGQTGSPGPTGEPG-PSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGP 1427
Query: 65 HG 66
G
Sbjct: 1428 QG 1429
Score = 46.2 bits (108), Expect = 2e-05
Identities = 30/70 (42%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 7 GTGGSTGDADGPGGPGIP--------DGPGGNAGGPGEAGATGGRGPRG-AGAARASGPR 57
G GS G PG PG P DGP G+ G GE G TG GP G G + G R
Sbjct: 1333 GPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKR 1392
Query: 58 G-GAPRGPHG 66
G P GP G
Sbjct: 1393 GPPGPAGPEG 1402
Score = 45.1 bits (105), Expect = 3e-05
Identities = 33/75 (44%), Positives = 36/75 (48%), Gaps = 16/75 (21%)
Query: 5 GQGTGGSTGDAD--GPGGP----------GIPDGPGGNAGGPGEAGATGGRGPRG-AGAA 51
G+GT G G GP GP G P GP GN+GG G AG G RGP G G
Sbjct: 899 GRGTPGKPGPRGQRGPTGPRGERGPRGITGKP-GPKGNSGGDGPAGPPGERGPNGPQGPT 957
Query: 52 RASGPRGGAPRGPHG 66
GP+G P GP G
Sbjct: 958 GFPGPKG--PPGPPG 970
Score = 44.7 bits (104), Expect = 4e-05
Identities = 36/104 (34%), Positives = 42/104 (40%), Gaps = 13/104 (12%)
Query: 7 GTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG----- 58
G G G+A PG G G P GP G G GE+G +G GP G G GP+G
Sbjct: 1282 GEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPV 1341
Query: 59 ---GAPRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSP 99
G P P + QDG P G + D Q P P
Sbjct: 1342 GFPGDPGPPGEPGPAGQDG--PPGDKGDDGEPGQTGSPGPTGEP 1383
Score = 43.1 bits (100), Expect = 1e-04
Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRG 58
G G G PG PG+P DGP G+ G G G GG+GP G G GPRG
Sbjct: 739 GPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRG 793
Score = 43.1 bits (100), Expect = 1e-04
Identities = 34/87 (39%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 7 GTGGSTGDAD--GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA-------GAARASG-P 56
G G TGD GP GP P GP G G G G GG G GA G A G P
Sbjct: 1237 GEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLP 1296
Query: 57 RGGAPRGPHGGAASAQDGRCPCGARRP 83
G P GP G + P GA P
Sbjct: 1297 GEGGPPGPKGERGEKGESG-PSGAAGP 1322
Score = 42.0 bits (97), Expect = 3e-04
Identities = 32/78 (41%), Positives = 33/78 (42%), Gaps = 16/78 (20%)
Query: 7 GTGGSTGDADGPGGPGI--------PDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPR 57
G G GD PG G P GP G AG PGE G G GP G G GP
Sbjct: 1054 GLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPP 1113
Query: 58 G-----GAP--RGPHGGA 68
G GAP +GP G A
Sbjct: 1114 GPAGEKGAPGEKGPQGPA 1131
Score = 41.6 bits (96), Expect = 4e-04
Identities = 27/64 (42%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
+G G+ G PG PG P GP G G PGE G G G G G GP G P
Sbjct: 1092 RGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAG--PV 1149
Query: 63 GPHG 66
GP G
Sbjct: 1150 GPPG 1153
Score = 41.6 bits (96), Expect = 4e-04
Identities = 29/73 (39%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 6 QGTGGSTGDAD-----GPGGP----GIPDGPG--GNAGGPGEAGATGGRGPRGAGAARAS 54
QG G GD GP GP G+P PG G G G+ G G GPRG A
Sbjct: 1206 QGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGA--- 1262
Query: 55 GPRGGAPRGPHGG 67
P P+GP GG
Sbjct: 1263 -PGADGPQGPPGG 1274
Score = 41.2 bits (95), Expect = 5e-04
Identities = 28/70 (40%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGN------AGGPGEAGATGGRGPRGAGAARASGP 56
A G+ G T GP G P GP G G PG G +GG GP G R GP
Sbjct: 893 ANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGER--GP 950
Query: 57 RGGAPRGPHG 66
G P+GP G
Sbjct: 951 NG--PQGPTG 958
Score = 41.2 bits (95), Expect = 5e-04
Identities = 27/64 (42%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 5 GQGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPR 62
G G G+ G+ PG G P G GG G GE G G GP G A+GP G P+
Sbjct: 1274 GIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSG-----AAGPPG--PK 1326
Query: 63 GPHG 66
GP G
Sbjct: 1327 GPPG 1330
Score = 41.2 bits (95), Expect = 5e-04
Identities = 29/75 (38%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG--- 58
+G G G+ PG PG PDGP G G PG G G GP+G G GP G
Sbjct: 1440 RGIPGPVGEQGLPGSPG-PDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQG 1498
Query: 59 -----GAPRGPHGGA 68
G P GP G +
Sbjct: 1499 EKGDRGLP-GPQGSS 1512
Score = 40.4 bits (93), Expect = 8e-04
Identities = 26/60 (43%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHG 66
G+GG G+ PG G P GP G G PG AG G RG G+ AR P P+G G
Sbjct: 577 GSGGLKGE---PGDVG-PQGPRGVQGPPGPAGKPGRRGRAGSDGARGM-PGQTGPKGDRG 631
Score = 40.4 bits (93), Expect = 8e-04
Identities = 31/79 (39%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 7 GTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGP 64
G G G PG G+P DGP G G PG+ G P GA G G P GP
Sbjct: 1030 GLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGL-----PGPVGALGLKGNEG--PPGP 1082
Query: 65 HGGAASAQDGRCPCGARRP 83
G A S + R P GA P
Sbjct: 1083 PGPAGSPGE-RGPAGAAGP 1100
Score = 40.0 bits (92), Expect = 0.001
Identities = 28/64 (43%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 6 QGTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPR 62
QG G+ G+A +GP G P GP G G PG G G GP G G + GP G P
Sbjct: 1404 QGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDG--PP 1461
Query: 63 GPHG 66
GP G
Sbjct: 1462 GPMG 1465
Score = 40.0 bits (92), Expect = 0.001
Identities = 35/109 (32%), Positives = 44/109 (40%), Gaps = 20/109 (18%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPRG---- 58
G G G+ G G+P GP G++G GE G TG GP G G GP+G
Sbjct: 1489 GLIGPPGEQGEKGDRGLP-GPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGS 1547
Query: 59 GAPRGPHGGAASAQDGRCPCGARRPDSRLLQLHITMPFSSPMEAELVRR 107
P GP G A P G P ++Q P++A RR
Sbjct: 1548 SGPTGPKGEAGHPG----PPGPPGPPGEVIQ-------PLPIQASRTRR 1585
Score = 39.7 bits (91), Expect = 0.001
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPH 65
QG G G A GP GP DG G G PG+ G+ G +G +G GP G P+GP
Sbjct: 1137 QGPVGLPGPA-GPVGPPGEDGDKGEIGEPGQKGSKGDKGEQG-----PPGPTG--PQGPI 1188
Query: 66 G 66
G
Sbjct: 1189 G 1189
Score = 38.9 bits (89), Expect = 0.002
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 15/72 (20%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGA----GAARASGPRGG-- 59
+G GG GD GP P G G G PG G G +GP+G+ G A+G +GG
Sbjct: 846 KGRGGPNGDP----GPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRG 901
Query: 60 -----APRGPHG 66
PRG G
Sbjct: 902 TPGKPGPRGQRG 913
Score = 38.9 bits (89), Expect = 0.002
Identities = 35/82 (42%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRG--GAPRG 63
QG GS G PG G G G G PG G G GPRG GPRG G P G
Sbjct: 879 QGPKGSIGFPGFPGANG-EKGGRGTPGKPGPRGQRGPTGPRG-----ERGPRGITGKP-G 931
Query: 64 PHGGAASAQDGRC-PCGARRPD 84
P G S DG P G R P+
Sbjct: 932 PKGN--SGGDGPAGPPGERGPN 951
Score = 38.9 bits (89), Expect = 0.002
Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 5 GQGTGGSTGDA--DGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG-- 59
G G G G+ +GP GP GP G G PG+ G G G RG G +GP G
Sbjct: 938 GDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPG 997
Query: 60 --APRGPHG 66
P+GP G
Sbjct: 998 VVGPQGPTG 1006
Score = 38.5 bits (88), Expect = 0.003
Identities = 26/78 (33%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 6 QGTGGSTGDADGPGGPGI--PDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
+G G G PG PG+ P GP G G GE G G GP G + G
Sbjct: 981 RGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGD 1040
Query: 64 PHGGAASAQDGRCPCGAR 81
P +DG P G R
Sbjct: 1041 PGPAGLPGKDG--PPGLR 1056
Score = 38.1 bits (87), Expect = 0.004
Identities = 32/94 (34%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGP---------GGNAGGPGEAGATGGRGPRGAGAARAS 54
+G G +G A PG GP DGP G+ G PGE G G GP G
Sbjct: 1311 KGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGE 1370
Query: 55 GPRGGAPRGPHG--GAASAQDGRCPCGARRPDSR 86
+ G+P GP G G + R P G P+ R
Sbjct: 1371 PGQTGSP-GPTGEPGPSGPPGKRGPPGPAGPEGR 1403
Score = 37.7 bits (86), Expect = 0.005
Identities = 28/84 (33%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 6 QGTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG 59
+G G G PG PG P GP G G PG G G GP+G G GP G
Sbjct: 663 RGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQ 722
Query: 60 APRGPHGGAASAQDGRCPCGARRP 83
G Q P G + P
Sbjct: 723 QGNPGAQGLPGPQGAIGPPGEKGP 746
Score = 37.0 bits (84), Expect = 0.009
Identities = 28/70 (40%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRGGAPRGPH 65
G G GD GP GP P G G G GE G G G P G GP G P GP
Sbjct: 640 GEKGHRGDP-GPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPG--PPGPP 696
Query: 66 GGAASAQDGR 75
G + DG+
Sbjct: 697 G--VTGMDGQ 704
Score = 36.6 bits (83), Expect = 0.012
Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGA 60
+G G G PG G P G GG G PG+ G G RG +G G A G RG A
Sbjct: 558 RGPAGPMGLTGRPGPVG-PPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRA 612
Score = 36.6 bits (83), Expect = 0.012
Identities = 25/61 (40%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRG-PRGAGAARASGPRGGAPRGPH 65
G G G PG G P GP G+ G G+ G G RG P G GP+G P GP
Sbjct: 637 GLPGEKGHRGDPGPSG-PPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKG--PPGPP 693
Query: 66 G 66
G
Sbjct: 694 G 694
Score = 36.2 bits (82), Expect = 0.016
Identities = 26/74 (35%), Positives = 29/74 (39%), Gaps = 15/74 (20%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----AGAARASGP-----------RGGAP 61
GP GP GP G G G+ G G RGP G GA GP GG
Sbjct: 472 GPEGPAGLPGPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGD 531
Query: 62 RGPHGGAASAQDGR 75
G G SAQ+ +
Sbjct: 532 AGSKGPMVSAQESQ 545
Score = 36.2 bits (82), Expect = 0.016
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 6 QGTGGSTGDADGPGGPGIPD--GPGGNAGGPGEAGATGGRGPRGAGAARASGPRGG-APR 62
+GT G G+ PG G G G G PG G G GP+G G GP G P
Sbjct: 804 KGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRG-----GPNGDPGPL 858
Query: 63 GPHG 66
GP G
Sbjct: 859 GPPG 862
Score = 35.8 bits (81), Expect = 0.020
Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG----------AGAARASGPRG--GAP--R 62
GP GP P GP G G G+ G G GP+G GA GP+G G P +
Sbjct: 685 GPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEK 744
Query: 63 GPHG 66
GP G
Sbjct: 745 GPLG 748
Score = 35.8 bits (81), Expect = 0.020
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 16 DGPGGPGIPDG-PG--GNAGGPGEAGATGGRGPRG----AGAARASGPRGGAPRGPHG 66
+GP GP P G PG G AG G G G GP+G AG A G +G P+GP G
Sbjct: 1077 EGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKG--PQGPAG 1132
Score = 35.4 bits (80), Expect = 0.027
Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 16/76 (21%)
Query: 7 GTGGSTGDAD--------GPGGPGIPDGPGGNAGGPGEAGA------TGGRGPRGA-GAA 51
G+ G TG+ GP GP P+G G G GEAG TG GP+GA G
Sbjct: 1375 GSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKP 1434
Query: 52 RASGPRG-GAPRGPHG 66
G RG P G G
Sbjct: 1435 GPDGLRGIPGPVGEQG 1450
Score = 35.0 bits (79), Expect = 0.035
Identities = 28/87 (32%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 7 GTGGSTGDADGPGGPGI-----PDGPGGNAGGPGEAGATGGRGPRG----AGAARASGPR 57
G G+ G+ G G+ +GP G G PG G G GP G G GP
Sbjct: 1192 GPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPP 1251
Query: 58 G-GAPRGPHGGAASAQDGRCPCGARRP 83
G PRGP G + P G P
Sbjct: 1252 GPPGPRGPSGAPGADGPQGPPGGIGNP 1278
Score = 34.7 bits (78), Expect = 0.045
Identities = 28/67 (41%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 7 GTGGSTGDA--DGPGGP-GIPDGPGGNAGGPGEAGATGGRGPRGAGAARA----SGPRGG 59
G G G A DG GP G+P GP G G PGE G G G G ++ GP G
Sbjct: 1123 GEKGPQGPAGRDGLQGPVGLP-GPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPG- 1180
Query: 60 APRGPHG 66
P GP G
Sbjct: 1181 -PTGPQG 1186
Score = 34.3 bits (77), Expect = 0.059
Identities = 26/62 (41%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 7 GTGGSTGDADGPGGPGIPDG----PG-----GNAGGPGEAGATGGRGPRG-AGAARASGP 56
G G G PG PG PDG PG G G PG G G GP G G SGP
Sbjct: 1420 GKTGPIGPQGAPGKPG-PDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGP 1478
Query: 57 RG 58
+G
Sbjct: 1479 KG 1480
Score = 33.9 bits (76), Expect = 0.077
Identities = 27/72 (37%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 5 GQGTGGSTGDADGPGGPGIP--DGPGGNAGGPGEAGATGGRGPRG-------AGAARASG 55
GQG G G PG G+ DG G G GE G G G +G G G
Sbjct: 776 GQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPG 835
Query: 56 PRG-GAPRGPHG 66
PRG P GP G
Sbjct: 836 PRGEDGPEGPKG 847
Score = 33.5 bits (75), Expect = 0.10
Identities = 28/68 (41%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 6 QGTGGSTGDADGPG--GPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGG--- 59
+G GS G PG GP G G AG PGE G G GP G G G RG
Sbjct: 609 RGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGE 668
Query: 60 -APRGPHG 66
PRG G
Sbjct: 669 VGPRGLPG 676
Score = 33.1 bits (74), Expect = 0.13
Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G G GG G P GP G G PG G G G RG + G P
Sbjct: 763 GHPGKEGPPGEKGGQG-PPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFP 816
Score = 31.6 bits (70), Expect = 0.38
Identities = 28/92 (30%), Positives = 34/92 (36%), Gaps = 15/92 (16%)
Query: 7 GTGGSTGDADGPG-----GPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
G G TG PG GP GP G G PG G G +G G + + G P
Sbjct: 694 GPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLP 753
Query: 62 -----RGPHG-----GAASAQDGRCPCGARRP 83
GP G G + G+ P G + P
Sbjct: 754 GMPGADGPPGHPGKEGPPGEKGGQGPPGPQGP 785
Score = 31.2 bits (69), Expect = 0.50
Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRG-AGAARASGPRGGAPRGPHGGAASAQDGR 75
GP GP G G G PG G G G G G GP G A + G A + R
Sbjct: 559 GPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGAR 618
Query: 76 CPCGARRP 83
G P
Sbjct: 619 GMPGQTGP 626
Score = 29.3 bits (64), Expect = 1.9
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 6 QGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP---- 61
+G G GD G PG P G G G G G G GP G + G P
Sbjct: 819 KGDMGIKGDRGEIGPPG-PRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPG 877
Query: 62 -RGPHG 66
+GP G
Sbjct: 878 RQGPKG 883
Score = 26.9 bits (58), Expect = 9.5
Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARAS-GPRGGAPRGPH 65
G G G A G G+P G G G+ G G G G R GP G P GP
Sbjct: 604 GKPGRRGRAGSDGARGMP----GQTGPKGDRGFDGLAGLPGEKGHRGDPGPSG--PPGPP 657
Query: 66 G 66
G
Sbjct: 658 G 658
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 47.4 bits (111), Expect = 7e-06
Identities = 30/76 (39%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASG---PRG- 58
+ G G+GG G+ D GG G + GG G G+ GG G G G R+SG PRG
Sbjct: 185 SSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGR 244
Query: 59 GAPRGPHGGAASAQDG 74
G RG GG + G
Sbjct: 245 GGGRGGRGGMGGSDRG 260
Score = 36.2 bits (82), Expect = 0.016
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPR 62
+ G G GG G G + G GG+ GG G +GG G G G RGG R
Sbjct: 164 SSGGGGGGGGGGNYGQDQSSMSSG-GGSGGGYGNQDQSGGGGSGGYG----QQDRGGRGR 218
Query: 63 GPHGGAASAQDG 74
G GG G
Sbjct: 219 GGSGGGGGGGGG 230
Score = 36.2 bits (82), Expect = 0.016
Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 26 GPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHGGAAS--AQDGRCP 77
G G GG G G G G G G+ G RGG P G GG A D +CP
Sbjct: 378 GGGNGRGGRGRGGPMGRGGYGGGGSG--GGGRGGFPSGGGGGGGQQRAGDWKCP 429
Score = 35.4 bits (80), Expect = 0.027
Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 5 GQGTGGSTGDADGPGGPGIPDGPGGNAGG---PGEAGATGGRGPRGAGAARASGPRGGAP 61
G+G GGS G G GG G ++GG G G GGRG G G+ R + G P
Sbjct: 215 GRGRGGSGGGGGGGGG-----GYNRSSGGYEPRGRGGGRGGRGGMG-GSDRGGFNKFGGP 268
Query: 62 RGPHGGAASAQD 73
R S QD
Sbjct: 269 RDQGSRHDSEQD 280
Score = 35.4 bits (80), Expect = 0.027
Identities = 21/49 (42%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 24 PDGPGGNAGGPGEAG-----ATGGRGPRGAGAARASGPRGGAPRGPHGG 67
PDGPGG GG G GGRG G R G G RG GG
Sbjct: 452 PDGPGGGPGGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGG 500
Score = 32.0 bits (71), Expect = 0.29
Identities = 29/75 (38%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
Query: 16 DGPGGPGIPDGPGGNAGGPGEAGATG--GRGPRGAGAARAS--GPRGGAPRGPHGGAASA 71
DGPGG GGN G G G G RG G R G RGG RG G
Sbjct: 453 DGPGGGPGGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGGDRG--GFGPGK 510
Query: 72 QDGRCPCGARRPDSR 86
D R G R D R
Sbjct: 511 MDSR---GEHRQDRR 522
Score = 31.2 bits (69), Expect = 0.50
Identities = 26/82 (31%), Positives = 27/82 (32%), Gaps = 14/82 (17%)
Query: 7 GTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGP-------------RGAGAARA 53
G GG G G GG G GG GG AG P A +
Sbjct: 393 GRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKP 452
Query: 54 SGPRGGAPRGPHGGAASAQDGR 75
GP GG P G H G D R
Sbjct: 453 DGP-GGGPGGSHMGGNYGDDRR 473
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 47.0 bits (110), Expect = 9e-06
Identities = 30/67 (44%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 19 GGPGIPDGPGGNAGGPGEAGATGGR---GPRGAGAARASGPRGGAPRGPHGGAASAQDGR 75
GGP P GP AGG G AG GG GP GAG GP GG P G G S G
Sbjct: 7 GGP--PPGPPPPAGGGGGAGGAGGGPPPGPPGAGDRGGGGPGGGGPGGGSAGGPSQPPGG 64
Query: 76 CPCGARR 82
G R+
Sbjct: 65 GGPGIRK 71
Score = 43.1 bits (100), Expect = 1e-04
Identities = 23/49 (46%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 18 PGGPGIPDGPGGNAGGPGEAGATG--GRGPRGAGAARASGPRGGAPRGP 64
P GP P G GG AGG G G G G RG G GP GG+ GP
Sbjct: 10 PPGPPPPAGGGGGAGGAGGGPPPGPPGAGDRGGGGPGGGGPGGGSAGGP 58
Score = 37.7 bits (86), Expect = 0.005
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 3 AEGQGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAP 61
A G G G G PG PG D GG GG G G + G GP + P GG P
Sbjct: 17 AGGGGGAGGAGGGPPPGPPGAGDRGGGGPGGGGPGGGSAG-GP-------SQPPGGGGP 67
Score = 37.7 bits (86), Expect = 0.005
Identities = 26/54 (48%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 10 GSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRG 63
G G A G GG G P GP G AG G G GG GP G A S P GG G
Sbjct: 18 GGGGGAGGAGG-GPPPGPPG-AGDRG-GGGPGGGGPGGGSAGGPSQPPGGGGPG 68
Score = 32.0 bits (71), Expect = 0.29
Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 17 GPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHGG 67
G G G GP GP AG GG GP G G G GG + P GG
Sbjct: 20 GGGAGGAGGGP---PPGPPGAGDRGGGGPGGGGP--GGGSAGGPSQPPGGG 65
Score = 32.0 bits (71), Expect = 0.29
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 12 TGDADGPGGPGIPDGPGGNAGGPGEAGATGG 42
+G PGGPG+P G G G G G GG
Sbjct: 395 SGPPGPPGGPGMPPGGRGRGRGQGNWGPPGG 425
Score = 30.8 bits (68), Expect = 0.66
Identities = 22/48 (45%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 20 GPGIPDGPGGNAGGPGEAGATG--GRGPRGAGAARASGPRGGAPRGPH 65
GP P GPG GGPG AG G GP G A GG P PH
Sbjct: 497 GPLCPVGPGP--GGPGPAGPMGPFNPGPFNQGPPGAPPHAGGPP--PH 540
Score = 30.0 bits (66), Expect = 1.1
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 19 GGPGIPDGPGGNAGGPGEAGATGGRGPRG 47
G PG P GPG GG G G GP G
Sbjct: 396 GPPGPPGGPGMPPGGRGRGRGQGNWGPPG 424
Score = 29.3 bits (64), Expect = 1.9
Identities = 26/69 (37%), Positives = 29/69 (42%), Gaps = 14/69 (20%)
Query: 17 GPGGPGIPDGPGG-------NAGGPGEAGATGG-----RGPRGAGAARASGPRGGAPRGP 64
GPGGPG P GP G N G PG GG P+G G + AP P
Sbjct: 505 GPGGPG-PAGPMGPFNPGPFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPQW-QPPAPHDP 562
Query: 65 HGGAASAQD 73
AA+A D
Sbjct: 563 SKAAAAAAD 571
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.138 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,967,156
Number of Sequences: 37866
Number of extensions: 671511
Number of successful extensions: 28322
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 820
Number of HSP's that attempted gapping in prelim test: 5821
Number of HSP's gapped (non-prelim): 9509
length of query: 180
length of database: 18,247,518
effective HSP length: 96
effective length of query: 84
effective length of database: 14,612,382
effective search space: 1227440088
effective search space used: 1227440088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.