COL12A1 37398

Name: COL12A1	Sequence: fasta or formatted (3063aa)		NCBI GI: 93141047
Description: collagen, type XII, alpha 1 long isoform precursor		Referenced in: Collagen Fibronectin Family
Other entries for this name: alt prot [1899aa] collagen, type XII, alpha 1 short isoform precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.2 159 2 C cysteine 0.7 21 2 D aspartate 5.6 172 2 E glutamate 6.3 194 2 F phenylalanine 3.0 91 2 G glycine 9.2 281 2 H histidine 1.0 31 1 I isoleucine 4.8 148 3 K lysine 5.1 156 3 L leucine 6.6 203 3 M methionine 1.5 45 2 N asparagine 3.9 118 2 P proline 8.6 263 5 Q glutamine 3.4 104 2 R arginine 5.1 157 3 S serine 7.9 241 2 T threonine 8.7 266 3 V valine 8.8 270 3 W tryptophan 1.0 30 1 Y tyrosine 3.7 113 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 collagen, type XII, alpha 1 long isoform precursor [... COL12A1 0.622 collagen, type XII, alpha 1 short isoform precursor ... COL14A1 0.201 collagen, type XIV, alpha 1 COL22A1 0.067 collagen, type XXII, alpha 1 COL20A1 0.065 collagen, type XX, alpha 1 FN1 0.059 fibronectin 1 isoform 2 preproprotein FN1 0.059 fibronectin 1 isoform 1 preproprotein FN1 0.058 fibronectin 1 isoform 4 preproprotein FN1 0.058 fibronectin 1 isoform 3 preproprotein COL21A1 0.058 collagen, type XXI, alpha 1 precursor COL7A1 0.053 alpha 1 type VII collagen precursor FN1 0.051 fibronectin 1 isoform 5 preproprotein FN1 0.051 fibronectin 1 isoform 6 preproprotein COL9A1 0.050 alpha 1 type IX collagen isoform 1 precursor COL19A1 0.041 alpha 1 type XIX collagen precursor LOC100293055 0.039 PREDICTED: similar to COL22A1 protein COL16A1 0.038 alpha 1 type XVI collagen precursor COL5A1 0.038 alpha 1 type V collagen preproprotein COL11A1 0.037 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.037 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.037 alpha 1 type XI collagen isoform A preproprotein [Ho... COL10A1 0.037 type X collagen alpha 1 precursor COL2A1 0.037 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.037 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL4A5 0.037 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.037 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.037 type IV collagen alpha 5 isoform 3 precursor COL9A1 0.037 alpha 1 type IX collagen isoform 2 precursor COL1A1 0.037 alpha 1 type I collagen preproprotein COL3A1 0.037 collagen type III alpha 1 preproprotein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.