Guide to the Human Genome
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Name: COL12A1 Sequence: fasta or formatted (3063aa) NCBI GI: 93141047
Description:

collagen, type XII, alpha 1 long isoform precursor

Referenced in:

Collagen
Fibronectin Family

Other entries for this name:
alt prot [1899aa] collagen, type XII, alpha 1 short isoform precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2        159           2
 C cysteine            0.7         21           2
 D aspartate           5.6        172           2
 E glutamate           6.3        194           2
 F phenylalanine       3.0         91           2
 G glycine             9.2        281           2
 H histidine           1.0         31           1
 I isoleucine          4.8        148           3
 K lysine              5.1        156           3
 L leucine             6.6        203           3
 M methionine          1.5         45           2
 N asparagine          3.9        118           2
 P proline             8.6        263           5
 Q glutamine           3.4        104           2
 R arginine            5.1        157           3
 S serine              7.9        241           2
 T threonine           8.7        266           3
 V valine              8.8        270           3
 W tryptophan          1.0         30           1
 Y tyrosine            3.7        113           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   collagen, type XII, alpha 1 long isoform precursor [... 
COL12A1               0.622   collagen, type XII, alpha 1 short isoform precursor ...
COL14A1               0.201   collagen, type XIV, alpha 1 
COL22A1               0.067   collagen, type XXII, alpha 1 
COL20A1               0.065   collagen, type XX, alpha 1 
FN1                   0.059   fibronectin 1 isoform 2 preproprotein 
FN1                   0.059   fibronectin 1 isoform 1 preproprotein 
FN1                   0.058   fibronectin 1 isoform 4 preproprotein 
FN1                   0.058   fibronectin 1 isoform 3 preproprotein 
COL21A1               0.058   collagen, type XXI, alpha 1 precursor 
COL7A1                0.053   alpha 1 type VII collagen precursor 
FN1                   0.051   fibronectin 1 isoform 5 preproprotein 
FN1                   0.051   fibronectin 1 isoform 6 preproprotein 
COL9A1                0.050   alpha 1 type IX collagen isoform 1 precursor 
COL19A1               0.041   alpha 1 type XIX collagen precursor 
LOC100293055          0.039   PREDICTED: similar to COL22A1 protein 
COL16A1               0.038   alpha 1 type XVI collagen precursor 
COL5A1                0.038   alpha 1 type V collagen preproprotein 
COL11A1               0.037   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.037   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.037   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL10A1               0.037   type X collagen alpha 1 precursor 
COL2A1                0.037   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.037   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL4A5                0.037   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.037   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.037   type IV collagen alpha 5 isoform 3 precursor 
COL9A1                0.037   alpha 1 type IX collagen isoform 2 precursor 
COL1A1                0.037   alpha 1 type I collagen preproprotein 
COL3A1                0.037   collagen type III alpha 1 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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