Guide to the Human Genome
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Name: CTAG2 Sequence: fasta or formatted (210aa) NCBI GI: 10337609
Description:

cancer/testis antigen 2 isoform LAGE-1b

Referenced in:

Testes and Sperm

Other entries for this name:
alt prot [180aa] cancer/testis antigen 2 isoform LAGE-1a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         24           2
 C cysteine            1.4          3           1
 D aspartate           5.2         11           1
 E glutamate           3.8          8           1
 F phenylalanine       2.4          5           1
 G glycine            20.5         43           2
 H histidine           1.9          4           1
 I isoleucine          1.9          4           1
 K lysine              1.9          4           1
 L leucine             5.2         11           2
 M methionine          2.9          6           1
 N asparagine          1.4          3           1
 P proline            11.9         25           4
 Q glutamine           3.8          8           1
 R arginine           10.0         21           2
 S serine              6.2         13           2
 T threonine           3.3          7           1
 V valine              4.3          9           2
 W tryptophan          0.5          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cancer/testis antigen 2 isoform LAGE-1b 
CTAG2                 0.619   cancer/testis antigen 2 isoform LAGE-1a 
CTAG1B                0.496   cancer/testis antigen 1B 
CTAG1A                0.496   cancer/testis antigen 1A 
COL1A1                0.084   alpha 1 type I collagen preproprotein 
COL3A1                0.077   collagen type III alpha 1 preproprotein 
COL1A2                0.075   alpha 2 type I collagen 
COL17A1               0.072   alpha 1 type XVII collagen 
COL2A1                0.072   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.072   collagen, type II, alpha 1 isoform 2 precursor [Hom...
LAGE3                 0.070   L antigen family, member 3 
COL9A2                0.065   alpha 2 type IX collagen 
COL11A1               0.065   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.065   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.065   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL14A1               0.063   collagen, type XIV, alpha 1 
COL28A1               0.063   collagen, type XXVIII precursor 
COL12A1               0.060   collagen, type XII, alpha 1 short isoform precursor ...
COL12A1               0.060   collagen, type XII, alpha 1 long isoform precursor [...
COL5A1                0.060   alpha 1 type V collagen preproprotein 
COL27A1               0.060   collagen, type XXVII, alpha 1 
COL9A3                0.060   alpha 3 type IX collagen 
COL4A2                0.060   alpha 2 type IV collagen preproprotein 
COL7A1                0.058   alpha 1 type VII collagen precursor 
COL6A1                0.058   collagen, type VI, alpha 1 precursor 
COL11A2               0.058   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.058   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.058   collagen, type XI, alpha 2 isoform 1 preproprotein ...
LOC100293055          0.058   PREDICTED: similar to COL22A1 protein 
COL6A3                0.055   alpha 3 type VI collagen isoform 5 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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