COL12A1 37399

Name: COL12A1	Sequence: fasta or formatted (1899aa)		NCBI GI: 93141049
Description: collagen, type XII, alpha 1 short isoform precursor		Referenced in: Collagen Fibronectin Family
Other entries for this name: alt prot [3063aa] collagen, type XII, alpha 1 long isoform precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.8 91 2 C cysteine 0.9 17 2 D aspartate 5.7 109 2 E glutamate 5.5 104 2 F phenylalanine 2.7 52 2 G glycine 10.5 199 2 H histidine 1.2 22 1 I isoleucine 4.5 85 2 K lysine 4.5 85 2 L leucine 6.7 127 3 M methionine 1.3 25 2 N asparagine 4.2 80 2 P proline 10.2 193 5 Q glutamine 3.6 69 2 R arginine 5.6 106 2 S serine 7.5 142 2 T threonine 7.9 150 3 V valine 8.1 153 3 W tryptophan 1.0 19 1 Y tyrosine 3.7 71 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 collagen, type XII, alpha 1 short isoform precursor ... COL12A1 0.989 collagen, type XII, alpha 1 long isoform precursor [... COL14A1 0.321 collagen, type XIV, alpha 1 COL22A1 0.107 collagen, type XXII, alpha 1 COL20A1 0.104 collagen, type XX, alpha 1 COL21A1 0.092 collagen, type XXI, alpha 1 precursor COL7A1 0.085 alpha 1 type VII collagen precursor COL9A1 0.079 alpha 1 type IX collagen isoform 1 precursor FN1 0.070 fibronectin 1 isoform 3 preproprotein FN1 0.070 fibronectin 1 isoform 4 preproprotein FN1 0.069 fibronectin 1 isoform 2 preproprotein FN1 0.068 fibronectin 1 isoform 1 preproprotein FN1 0.066 fibronectin 1 isoform 5 preproprotein FN1 0.066 fibronectin 1 isoform 6 preproprotein COL19A1 0.065 alpha 1 type XIX collagen precursor LOC100293055 0.062 PREDICTED: similar to COL22A1 protein COL16A1 0.060 alpha 1 type XVI collagen precursor COL5A1 0.060 alpha 1 type V collagen preproprotein COL11A1 0.059 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.059 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.059 alpha 1 type XI collagen isoform A preproprotein [Ho... COL10A1 0.059 type X collagen alpha 1 precursor COL2A1 0.059 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.059 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL4A5 0.059 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.059 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.059 type IV collagen alpha 5 isoform 3 precursor COL9A1 0.059 alpha 1 type IX collagen isoform 2 precursor COL1A1 0.059 alpha 1 type I collagen preproprotein COL3A1 0.059 collagen type III alpha 1 preproprotein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.