Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM129A Sequence: fasta or formatted (928aa) NCBI GI: 16757970
Description:

niban protein isoform 2

Referenced in:

B cells

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         66           3
 C cysteine            1.8         17           1
 D aspartate           4.2         39           2
 E glutamate          12.7        118           5
 F phenylalanine       3.4         32           2
 G glycine             5.7         53           2
 H histidine           2.5         23           1
 I isoleucine          3.4         32           2
 K lysine              6.1         57           2
 L leucine             9.7         90           2
 M methionine          1.9         18           1
 N asparagine          3.1         29           1
 P proline             6.6         61           3
 Q glutamine           5.7         53           2
 R arginine            3.3         31           2
 S serine              8.3         77           2
 T threonine           4.7         44           2
 V valine              6.6         61           3
 W tryptophan          0.5          5           1
 Y tyrosine            2.4         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   niban protein isoform 2 
FAM129B               0.229   hypothetical protein LOC64855 isoform 1 
FAM129B               0.224   hypothetical protein LOC64855 isoform 2 
FAM129C               0.116   B-cell novel protein 1 isoform b 
FAM129C               0.116   B-cell novel protein 1 isoform a 
C2orf55               0.014   hypothetical protein LOC343990 
NOLC1                 0.013   nucleolar and coiled-body phosphoprotein 1 
NEFM                  0.012   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.012   neurofilament, medium polypeptide 150kDa isoform 2 ...
FILIP1                0.011   filamin A interacting protein 1 
TTBK1                 0.011   tau tubulin kinase 1 
BASP1                 0.010   brain abundant, membrane attached signal protein 1 [...
YTHDC1                0.010   splicing factor YT521-B isoform 1 
MLL2                  0.010   myeloid/lymphoid or mixed-lineage leukemia 2 
CD3EAP                0.010   CD3E antigen, epsilon polypeptide associated protein ...
RPGR                  0.010   retinitis pigmentosa GTPase regulator isoform C [Hom...
RP1L1                 0.010   retinitis pigmentosa 1-like 1 
PELP1                 0.010   proline, glutamic acid and leucine rich protein 1 [...
TECPR2                0.010   tectonin beta-propeller repeat containing 2 
CSF2RB                0.009   colony stimulating factor 2 receptor, beta precursor ...
FSCB                  0.009   fibrous sheath CABYR binding protein 
PCDH15                0.009   protocadherin 15 isoform CD2-1 precursor 
SFRS2IP               0.009   splicing factor, arginine/serine-rich 2, interactin...
HNRNPU                0.009   heterogeneous nuclear ribonucleoprotein U isoform a ...
C19orf57              0.009   hypothetical protein LOC79173 
HECW2                 0.009   HECT, C2 and WW domain containing E3 ubiquitin prote...
CHGA                  0.009   chromogranin A precursor 
HNRNPU                0.009   heterogeneous nuclear ribonucleoprotein U isoform b ...
TNRC18                0.009   trinucleotide repeat containing 18 
HNRNPUL2              0.009   heterogeneous nuclear ribonucleoprotein U-like 2 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press