Guide to the Human Genome
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Name: RAB11FIP2 Sequence: fasta or formatted (512aa) NCBI GI: 7662394
Description:

RAB11 family interacting protein 2 (class I)

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7         19           1
 C cysteine            0.4          2           1
 D aspartate           5.9         30           1
 E glutamate           7.4         38           2
 F phenylalanine       5.3         27           1
 G glycine             5.1         26           2
 H histidine           2.1         11           1
 I isoleucine          4.3         22           2
 K lysine             10.0         51           2
 L leucine             8.6         44           2
 M methionine          3.3         17           2
 N asparagine          4.9         25           2
 P proline             5.7         29           1
 Q glutamine           3.7         19           1
 R arginine            5.9         30           2
 S serine             11.7         60           3
 T threonine           5.9         30           1
 V valine              3.7         19           1
 W tryptophan          0.8          4           1
 Y tyrosine            1.8          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAB11 family interacting protein 2 (class I) 
RAB11FIP1             0.228   RAB11 family interacting protein 1 isoform 3 
RAB11FIP1             0.228   RAB11 family interacting protein 1 isoform 1 
RAB11FIP5             0.173   RAB11 family interacting protein 5 (class I) 
RAB11FIP1             0.059   RAB11 family interacting protein 1 isoform 2 
LOC100132214          0.031   PREDICTED: similar to calcium-promoted Ras inactiva...
LOC100132214          0.031   PREDICTED: similar to calcium-promoted Ras inactiva...
LOC100132214          0.031   PREDICTED: similar to calcium-promoted Ras inactiva...
LOC100132214          0.031   PREDICTED: similar to calcium-promoted Ras inactiva...
RASA4                 0.031   RAS p21 protein activator 4 isoform 2 
RASA4                 0.031   RAS p21 protein activator 4 isoform 1 
MCTP1                 0.027   multiple C2 domains, transmembrane 1 isoform S [Homo...
MCTP1                 0.027   multiple C2 domains, transmembrane 1 isoform L [Hom...
UNC13C                0.026   unc-13 homolog C 
UNC13A                0.026   unc-13 homolog A 
SYTL2                 0.025   synaptotagmin-like 2 isoform b 
SYTL2                 0.025   synaptotagmin-like 2 isoform a 
SYTL2                 0.025   synaptotagmin-like 2 isoform i 
SYTL2                 0.025   synaptotagmin-like 2 isoform h 
SYTL2                 0.025   synaptotagmin-like 2 isoform g 
SYTL2                 0.025   synaptotagmin-like 2 isoform f 
SYTL2                 0.025   synaptotagmin-like 2 isoform e 
SYTL2                 0.025   synaptotagmin-like 2 isoform d 
SYTL2                 0.025   synaptotagmin-like 2 isoform c 
UNC13B                0.025   UNC13 (C. elegans)-like 
RASAL1                0.024   RAS protein activator like 1 
SYT1                  0.024   synaptotagmin I 
SYT1                  0.024   synaptotagmin I 
SYT1                  0.024   synaptotagmin I 
SYT2                  0.023   synaptotagmin II 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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