Guide to the Human Genome
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Name: THBD Sequence: fasta or formatted (575aa) NCBI GI: 4507483
Description:

thrombomodulin precursor

Referenced in:

Coagulation
Epidermal Growth Factor

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         64           5
 C cysteine            8.5         49           1
 D aspartate           5.4         31           2
 E glutamate           5.4         31           2
 F phenylalanine       3.0         17           1
 G glycine            10.3         59           2
 H histidine           2.6         15           1
 I isoleucine          2.8         16           1
 K lysine              1.4          8           2
 L leucine             8.9         51           3
 M methionine          1.0          6           1
 N asparagine          3.0         17           2
 P proline             9.2         53           3
 Q glutamine           4.5         26           2
 R arginine            4.3         25           3
 S serine              5.6         32           2
 T threonine           4.2         24           1
 V valine              5.9         34           2
 W tryptophan          1.0          6           1
 Y tyrosine            1.9         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   thrombomodulin precursor 
CD248                 0.155   tumor endothelial marker 1 precursor 
CD93                  0.143   CD93 antigen precursor 
MEGF6                 0.088   EGF-like-domain, multiple 3 
FBN2                  0.086   fibrillin 2 precursor 
MATN2                 0.086   matrilin 2 isoform b precursor 
MATN2                 0.086   matrilin 2 isoform a precursor 
FBN1                  0.082   fibrillin 1 precursor 
FBN3                  0.079   fibrillin 3 precursor 
HMCN1                 0.078   hemicentin 1 
FBLN2                 0.077   fibulin 2 isoform a precursor 
SCUBE3                0.076   signal peptide, CUB domain, EGF-like 3 
SCUBE1                0.075   signal peptide, CUB domain, EGF-like 1 
FBLN2                 0.074   fibulin 2 isoform b precursor 
FBLN1                 0.072   fibulin 1 isoform B precursor 
FBLN1                 0.072   fibulin 1 isoform A precursor 
FBLN1                 0.072   fibulin 1 isoform D 
FBLN1                 0.072   fibulin 1 isoform C precursor 
LTBP1                 0.072   latent transforming growth factor beta binding prote...
LTBP1                 0.072   latent transforming growth factor beta binding prote...
LTBP3                 0.070   latent transforming growth factor beta binding prot...
LTBP3                 0.070   latent transforming growth factor beta binding prote...
LTBP4                 0.067   latent transforming growth factor beta binding prot...
LTBP4                 0.067   latent transforming growth factor beta binding prot...
LTBP4                 0.067   latent transforming growth factor beta binding prot...
EFEMP2                0.066   EGF-containing fibulin-like extracellular matrix pr...
HMCN2                 0.065   PREDICTED: hemicentin 2 
HMCN2                 0.065   PREDICTED: hemicentin 2 
HMCN2                 0.065   PREDICTED: hemicentin 2 
LTBP2                 0.063   latent transforming growth factor beta binding protei...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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