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Search of human proteins with 4507585
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507585 tumor necrosis factor receptor superfamily, member
6b [Homo sapiens]
(300 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14790170 tumor necrosis factor receptor superfamily, member 6... 634 0.0
gi|4507585 tumor necrosis factor receptor superfamily, member 6b... 634 0.0
gi|148743793 osteoprotegerin precursor [Homo sapiens] 172 3e-43
gi|4507577 tumor necrosis factor receptor 2 precursor [Homo sapi... 129 4e-30
gi|7657039 tumor necrosis factor receptor superfamily, member 21... 115 6e-26
gi|4505039 lymphotoxin beta receptor [Homo sapiens] 115 6e-26
gi|23200041 tumor necrosis factor receptor superfamily, member 1... 95 9e-20
gi|4507565 tumor necrosis factor receptor superfamily, member 11... 92 4e-19
gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens] 83 3e-16
gi|4507579 tumor necrosis factor receptor superfamily, member 4 ... 79 4e-15
gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens] 73 3e-13
gi|68348711 tumor necrosis factor receptor superfamily, member 8... 69 5e-12
gi|5730095 tumor necrosis factor receptor superfamily, member 9 ... 64 1e-10
gi|4505393 nerve growth factor receptor precursor [Homo sapiens] 64 2e-10
gi|23238200 RELT tumor necrosis factor receptor precursor [Homo ... 58 1e-08
gi|21361873 RELT tumor necrosis factor receptor precursor [Homo ... 58 1e-08
gi|4759246 tumor necrosis factor receptor superfamily, member 18... 54 2e-07
gi|23238197 tumor necrosis factor receptor superfamily, member 1... 54 2e-07
gi|23510423 tumor necrosis factor receptor superfamily, member 6... 53 4e-07
gi|23510421 tumor necrosis factor receptor superfamily, member 6... 53 4e-07
gi|4507583 tumor necrosis factor receptor superfamily, member 6 ... 53 4e-07
gi|4507587 tumor necrosis factor receptor superfamily, member 7 ... 52 5e-07
gi|21361086 tumor necrosis factor receptor superfamily, member 1... 51 1e-06
gi|4507575 tumor necrosis factor receptor 1 precursor [Homo sapi... 44 2e-04
gi|84490388 R-spondin1 [Homo sapiens] 43 3e-04
gi|11140823 X-linked ectodysplasin receptor [Homo sapiens] 43 3e-04
gi|181336739 multiple EGF-like-domains 11 [Homo sapiens] 42 5e-04
gi|134244285 Notch homolog 3 [Homo sapiens] 42 9e-04
gi|239757286 PREDICTED: similar to Fc fragment of IgG binding pr... 41 0.001
gi|239751787 PREDICTED: hypothetical protein XP_002348012 [Homo ... 41 0.001
>gi|14790170 tumor necrosis factor receptor superfamily, member 6b
[Homo sapiens]
Length = 300
Score = 634 bits (1634), Expect = 0.0
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MRALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPWRDAETGERLVCAQCPPGTFVQR 60
MRALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPWRDAETGERLVCAQCPPGTFVQR
Sbjct: 1 MRALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPWRDAETGERLVCAQCPPGTFVQR 60
Query: 61 PCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTGFF 120
PCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTGFF
Sbjct: 61 PCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTGFF 120
Query: 121 AHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLA 180
AHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLA
Sbjct: 121 AHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLA 180
Query: 181 LNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAFQDISIKRLQRLLQALEAPE 240
LNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAFQDISIKRLQRLLQALEAPE
Sbjct: 181 LNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAFQDISIKRLQRLLQALEAPE 240
Query: 241 GWGPTPRAGRAALQLKLRRRLTELLGAQDGALLVRLLQALRVARMPGLERSVRERFLPVH 300
GWGPTPRAGRAALQLKLRRRLTELLGAQDGALLVRLLQALRVARMPGLERSVRERFLPVH
Sbjct: 241 GWGPTPRAGRAALQLKLRRRLTELLGAQDGALLVRLLQALRVARMPGLERSVRERFLPVH 300
>gi|4507585 tumor necrosis factor receptor superfamily, member 6b
[Homo sapiens]
Length = 300
Score = 634 bits (1634), Expect = 0.0
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MRALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPWRDAETGERLVCAQCPPGTFVQR 60
MRALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPWRDAETGERLVCAQCPPGTFVQR
Sbjct: 1 MRALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPWRDAETGERLVCAQCPPGTFVQR 60
Query: 61 PCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTGFF 120
PCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTGFF
Sbjct: 61 PCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTGFF 120
Query: 121 AHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLA 180
AHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLA
Sbjct: 121 AHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLA 180
Query: 181 LNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAFQDISIKRLQRLLQALEAPE 240
LNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAFQDISIKRLQRLLQALEAPE
Sbjct: 181 LNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAFQDISIKRLQRLLQALEAPE 240
Query: 241 GWGPTPRAGRAALQLKLRRRLTELLGAQDGALLVRLLQALRVARMPGLERSVRERFLPVH 300
GWGPTPRAGRAALQLKLRRRLTELLGAQDGALLVRLLQALRVARMPGLERSVRERFLPVH
Sbjct: 241 GWGPTPRAGRAALQLKLRRRLTELLGAQDGALLVRLLQALRVARMPGLERSVRERFLPVH 300
>gi|148743793 osteoprotegerin precursor [Homo sapiens]
Length = 401
Score = 172 bits (436), Expect = 3e-43
Identities = 77/187 (41%), Positives = 108/187 (57%), Gaps = 5/187 (2%)
Query: 34 PTYPWRDAETGERLVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNV 93
P Y D ET +L+C +CPPGT++++ C T C PCP +YT W+ + C YC+
Sbjct: 26 PKYLHYDEETSHQLLCDKCPPGTYLKQHCTAKWKTVCAPCPDHYYTDSWHTSDECLYCSP 85
Query: 94 LCGEREEEARACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPC 153
+C E + + C+ THNR C C+ G + FCL+H SCPPG GV+ GTP +NT C+ C
Sbjct: 86 VCKELQYVKQECNRTHNRVCECKEGRYLEIEFCLKHRSCPPGFGVVQAGTPERNTVCKRC 145
Query: 154 PPGTFSASSSSSEQCQPHRNCTALGLALNVPGSSSHDTLCTSCTGFPLSTRVPGAEE--C 211
P G FS +SS C+ H NC+ GL L G+++HD + C+G ST+ G + C
Sbjct: 146 PDGFFSNETSSKAPCRKHTNCSVFGLLLTQKGNATHDNI---CSGNSESTQKCGIDVTLC 202
Query: 212 ERAVIDF 218
E A F
Sbjct: 203 EEAFFRF 209
>gi|4507577 tumor necrosis factor receptor 2 precursor [Homo
sapiens]
Length = 461
Score = 129 bits (323), Expect = 4e-30
Identities = 72/210 (34%), Positives = 102/210 (48%), Gaps = 18/210 (8%)
Query: 8 GLSLLCLVLALPALLPVPAVRGVAETPTYPWRDAETGER---LVCAQCPPGTFVQRPCRR 64
GL L ALPA + A A P R E ++ + C++C PG + C +
Sbjct: 13 GLELWAAAHALPAQV---AFTPYAPEPGSTCRLREYYDQTAQMCCSKCSPGQHAKVFCTK 69
Query: 65 DSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTGFFAHAG 124
S T C C YTQ WN++ C C C + E +AC NR C CR G++
Sbjct: 70 TSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRICTCRPGWYCALS 129
Query: 125 ------FCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALG 178
C C PG GV PGT + + C+PC PGTFS ++SS++ C+PH+ C +
Sbjct: 130 KQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICRPHQICNVVA 189
Query: 179 LALNVPGSSSHDTLCTSCTGFPLSTRVPGA 208
+PG++S D +CTS + P + PGA
Sbjct: 190 ----IPGNASMDAVCTSTS--PTRSMAPGA 213
>gi|7657039 tumor necrosis factor receptor superfamily, member 21
precursor [Homo sapiens]
Length = 655
Score = 115 bits (287), Expect = 6e-26
Identities = 58/169 (34%), Positives = 81/169 (47%)
Query: 35 TYPWRDAETGERLVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVL 94
TY D TG+ L C +CP GT+V C S C CP +T+ N +E+C C+
Sbjct: 53 TYRHVDRATGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQP 112
Query: 95 CGEREEEARACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCP 154
C E C A +R C C G F C H CP G GV GT +++ +C+ C
Sbjct: 113 CPWPMIEKLPCAALTDRECTCPPGMFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCA 172
Query: 155 PGTFSASSSSSEQCQPHRNCTALGLALNVPGSSSHDTLCTSCTGFPLST 203
GTFS SS +C+ + +C + L + PG+ D +C + F ST
Sbjct: 173 RGTFSDVPSSVMKCKAYTDCLSQNLVVIKPGTKETDNVCGTLPSFSSST 221
>gi|4505039 lymphotoxin beta receptor [Homo sapiens]
Length = 435
Score = 115 bits (287), Expect = 6e-26
Identities = 86/276 (31%), Positives = 117/276 (42%), Gaps = 34/276 (12%)
Query: 3 ALEGPGLSLLCLVLALPALLPVPAVRGV----AETPTYPWRDAETGE---RLVCAQCPPG 55
A PGL+ LVL L LL + V +E T ++ E E R+ C++CPPG
Sbjct: 6 ATSAPGLAWGPLVLGLFGLLAASQPQAVPPYASENQTCRDQEKEYYEPQHRICCSRCPPG 65
Query: 56 TFVQRPCRRDSPTTCGPCPPRHYTQFWNYL---ERCRYCNVLCGEREEEARACHATHNRA 112
T+V C R T C C Y + WNYL + CR C+ + G EE C +
Sbjct: 66 TYVSAKCSRIRDTVCATCAENSYNEHWNYLTICQLCRPCDPVMG--LEEIAPCTSKRKTQ 123
Query: 113 CRCRTGFFAHA-----GFCLEHASCPPGA-GVIAPGTPSQNTQCQPCPPGTFSASSSSSE 166
CRC+ G F A C + CPPG + N C PC G F +SS S
Sbjct: 124 CRCQPGMFCAAWALECTHCELLSDCPPGTEAELKDEVGKGNNHCVPCKAGHFQNTSSPSA 183
Query: 167 QCQPHRNCTALGLALNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAFQDIS- 225
+CQPH C GL PG++ DT C + PL + G ++ F ++
Sbjct: 184 RCQPHTRCENQGLVEAAPGTAQSDTTCKNPLE-PLPPEMSGTMLMLAVLLPLAFFLLLAT 242
Query: 226 ------------IKRLQRLLQALEAPEGWGPTPRAG 249
++L LL+ P+G GP P AG
Sbjct: 243 VFSCIWKSHPSLCRKLGSLLK--RRPQGEGPNPVAG 276
>gi|23200041 tumor necrosis factor receptor superfamily, member 14
precursor [Homo sapiens]
Length = 283
Score = 94.7 bits (234), Expect = 9e-20
Identities = 55/149 (36%), Positives = 68/149 (45%), Gaps = 10/149 (6%)
Query: 49 CAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGERE--EEARACH 106
C +C PG V+ C + T C PCPP Y N L +C C +C +R C
Sbjct: 54 CPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQ-MCDPAMGLRASRNCS 112
Query: 107 ATHNRACRCRTGFFA------HAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSA 160
T N C C G F H C +A+ PG V GT SQ+T CQ CPPGTFS
Sbjct: 113 RTENAVCGCSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQDTLCQNCPPGTFS- 171
Query: 161 SSSSSEQCQPHRNCTALGLALNVPGSSSH 189
+ + E+CQ C+ L SSSH
Sbjct: 172 PNGTLEECQHQTKCSWLVTKAGAGTSSSH 200
>gi|4507565 tumor necrosis factor receptor superfamily, member 11a
precursor [Homo sapiens]
Length = 616
Score = 92.4 bits (228), Expect = 4e-19
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 49 CAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVL-CGEREEEARACHA 107
C +C PG ++ C S + C PC P Y WN ++C V G+ A ++
Sbjct: 47 CNKCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNS 106
Query: 108 THNRACRCRTGFF--AHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSS 165
T R C C G+ C + C PG G P +++T C+PC G FS + SS+
Sbjct: 107 TTPRRCACTAGYHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSST 166
Query: 166 EQCQPHRNCTALGLALNVPGSSSHDTLCTS 195
++C+P NCT LG + G+ D +C+S
Sbjct: 167 DKCRPWTNCTFLGKRVEHHGTEKSDAVCSS 196
Score = 40.0 bits (92), Expect = 0.003
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 120 FAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNC-TALG 178
+ H G C C PG + + T + ++ C PC P + S + ++C H+ C T
Sbjct: 40 YEHLGRCCN--KCEPGKYMSSKCTTTSDSVCLPCGPDEYLDSWNEEDKCLLHKVCDTGKA 97
Query: 179 LALNVPGSSSHDTLCTSCTGFPLSTRVPGAEECE 212
L V G+S+ C G+ S ++CE
Sbjct: 98 LVAVVAGNSTTPRRCACTAGYHWS------QDCE 125
>gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens]
Length = 277
Score = 83.2 bits (204), Expect = 3e-16
Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 8/151 (5%)
Query: 49 CAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERC---RYCNVLCGEREEEARAC 105
C+ C PG + C + T C PC + WN C +YC+ G R ++
Sbjct: 38 CSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTS 97
Query: 106 HATHNRACRCRTGFFAHAGFC---LEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASS 162
+ C C G+ + C + H SC PG GV T +T C+PCP G FS S
Sbjct: 98 ET--DTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVS 155
Query: 163 SSSEQCQPHRNCTALGLALNVPGSSSHDTLC 193
S+ E+C P +C L + G++ D +C
Sbjct: 156 SAFEKCHPWTSCETKDLVVQQAGTNKTDVVC 186
Score = 47.8 bits (112), Expect = 1e-05
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 104 ACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSS 163
A H ACR + + ++ C + C PG +++ T T+C PC F + +
Sbjct: 17 AVHPEPPTACREKQ-YLINSQCC---SLCQPGQKLVSDCTEFTETECLPCGESEFLDTWN 72
Query: 164 SSEQCQPHRNCTA-LGLALNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAFQ 222
C H+ C LGL + G+S DT+CT G+ + +E CE V+
Sbjct: 73 RETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCT-----SEACESCVLHRSCSP 127
Query: 223 DISIKRL 229
+K++
Sbjct: 128 GFGVKQI 134
>gi|4507579 tumor necrosis factor receptor superfamily, member 4
precursor [Homo sapiens]
Length = 277
Score = 79.3 bits (194), Expect = 4e-15
Identities = 59/190 (31%), Positives = 75/190 (39%), Gaps = 36/190 (18%)
Query: 6 GPGLSLLCLVLALPALLPVPAVRGVAETPTYPWRDAETGERLVCAQCPPGTFVQRPCRRD 65
GP +LL L L L + + V TYP D C +C PG + C R
Sbjct: 11 GPCAALLLLGLGLSTVTGLHCVGD-----TYPSNDR------CCHECRPGNGMVSRCSRS 59
Query: 66 SPTTCGPCPPRHYTQFWNY--LERCRYCNVLCGEREEEARACHATHNRACRCRTGFFAHA 123
T C PC P Y + + C +CN+ G E + C AT + CRCR G
Sbjct: 60 QNTVCRPCGPGFYNDVVSSKPCKPCTWCNLRSG--SERKQLCTATQDTVCRCRAG----- 112
Query: 124 GFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLALNV 183
S PG C PCPPG F S ++ C+P NCT G
Sbjct: 113 --TQPLDSYKPG------------VDCAPCPPGHF--SPGDNQACKPWTNCTLAGKHTLQ 156
Query: 184 PGSSSHDTLC 193
P S+S D +C
Sbjct: 157 PASNSSDAIC 166
Score = 43.9 bits (102), Expect = 2e-04
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 132 CPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCT-ALGLALNVPGSSSHD 190
C PG G+++ + SQNT C+PC PG F SS+ C+P C G +++ D
Sbjct: 46 CRPGNGMVSRCSRSQNTVCRPCGPG-FYNDVVSSKPCKPCTWCNLRSGSERKQLCTATQD 104
Query: 191 TLCTSCTGF-PLSTRVPGAE 209
T+C G PL + PG +
Sbjct: 105 TVCRCRAGTQPLDSYKPGVD 124
>gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens]
Length = 203
Score = 72.8 bits (177), Expect = 3e-13
Identities = 41/128 (32%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 49 CAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERC---RYCNVLCGEREEEARAC 105
C+ C PG + C + T C PC + WN C +YC+ G R ++
Sbjct: 38 CSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTS 97
Query: 106 HATHNRACRCRTGFFAHAGFC---LEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASS 162
+ C C G+ + C + H SC PG GV T +T C+PCP G FS S
Sbjct: 98 ET--DTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVS 155
Query: 163 SSSEQCQP 170
S+ E+C P
Sbjct: 156 SAFEKCHP 163
Score = 47.8 bits (112), Expect = 1e-05
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 104 ACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSS 163
A H ACR + + ++ C + C PG +++ T T+C PC F + +
Sbjct: 17 AVHPEPPTACREKQ-YLINSQCC---SLCQPGQKLVSDCTEFTETECLPCGESEFLDTWN 72
Query: 164 SSEQCQPHRNCTA-LGLALNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAFQ 222
C H+ C LGL + G+S DT+CT G+ + +E CE V+
Sbjct: 73 RETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCT-----SEACESCVLHRSCSP 127
Query: 223 DISIKRL 229
+K++
Sbjct: 128 GFGVKQI 134
Score = 28.5 bits (62), Expect = 7.6
Identities = 16/62 (25%), Positives = 23/62 (37%)
Query: 52 CPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNR 111
C PG V++ S T C PCP ++ + E+C G E H +
Sbjct: 125 CSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTRSPGSAESPGGDPHHLRDP 184
Query: 112 AC 113
C
Sbjct: 185 VC 186
>gi|68348711 tumor necrosis factor receptor superfamily, member 8
isoform 1 precursor [Homo sapiens]
Length = 595
Score = 68.9 bits (167), Expect = 5e-12
Identities = 43/131 (32%), Positives = 57/131 (43%), Gaps = 12/131 (9%)
Query: 46 RLVCAQCPPGTFVQRPCRRDSPTTCGP-CPPRHYTQFWNYLERCRYCNVLCGEREEEARA 104
R C +CP G F + C + PT C C P +Y + +RC C + E
Sbjct: 42 RRCCYRCPMGLFPTQQCPQ-RPTDCRKQCEPDYYL---DEADRCTACVTCSRDDLVEKTP 97
Query: 105 CHATHNRACRCRTGFFAHAGF------CLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTF 158
C +R C CR G F C H+ CP G V PGT +NT C+P PG
Sbjct: 98 CAWNSSRVCECRPGMFCSTSAVNSCARCFFHSVCPAGMIVKFPGTAQKNTVCEPASPGV- 156
Query: 159 SASSSSSEQCQ 169
S + +S E C+
Sbjct: 157 SPACASPENCK 167
Score = 32.3 bits (72), Expect = 0.52
Identities = 21/81 (25%), Positives = 26/81 (32%), Gaps = 3/81 (3%)
Query: 54 PGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRAC 113
PG +PC S C P +Y + RC C + E C +R C
Sbjct: 225 PGLSPTQPCPEGSGDCRKQCEPDYYL---DEAGRCTACVSCSRDDLVEKTPCAWNSSRTC 281
Query: 114 RCRTGFFAHAGFCLEHASCPP 134
CR G A C P
Sbjct: 282 ECRPGMICATSATNSRARCVP 302
>gi|5730095 tumor necrosis factor receptor superfamily, member 9
precursor [Homo sapiens]
Length = 255
Score = 64.3 bits (155), Expect = 1e-10
Identities = 43/148 (29%), Positives = 61/148 (41%), Gaps = 20/148 (13%)
Query: 49 CAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNY--LERCRYCNVLCGEREEEARACH 106
C+ CP GTF C + C PCPP ++ + CR C + R+E C
Sbjct: 28 CSNCPAGTF----CDNNRNQICSPCPPNSFSSAGGQRTCDICRQCKGVFRTRKE----CS 79
Query: 107 ATHNRACRCRTGFFA-HAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSS 165
+T N C C GF AG + C G + G C+ C GTF+
Sbjct: 80 STSNAECDCTPGFHCLGAGCSMCEQDCKQGQELTKKG-------CKDCCFGTFNDQKRGI 132
Query: 166 EQCQPHRNCTALGLALNVPGSSSHDTLC 193
C+P NC+ G ++ V G+ D +C
Sbjct: 133 --CRPWTNCSLDGKSVLVNGTKERDVVC 158
Score = 30.4 bits (67), Expect = 2.0
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 130 ASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLALNVPGSSSH 189
++CP G ++N C PCPP +FS S+ C R C + SS+
Sbjct: 29 SNCPAGTFC----DNNRNQICSPCPPNSFS-SAGGQRTCDICRQCKGV-FRTRKECSSTS 82
Query: 190 DTLCTSCTGF 199
+ C GF
Sbjct: 83 NAECDCTPGF 92
>gi|4505393 nerve growth factor receptor precursor [Homo sapiens]
Length = 427
Score = 63.5 bits (153), Expect = 2e-10
Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 16/176 (9%)
Query: 2 RALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPWRDAETGERLVCAQCPPGTFVQRP 61
RA++GP L LL L+ + + + T Y +GE C C G V +P
Sbjct: 8 RAMDGPRLLLLLLLG-----VSLGGAKEACPTGLY----THSGE--CCKACNLGEGVAQP 56
Query: 62 CRRDSPTTCGPCPPR-HYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTGFF 120
C + T C PC ++ + E C+ C G + A C + CRC G++
Sbjct: 57 CGANQ-TVCEPCLDSVTFSDVVSATEPCKPCTECVGLQSMSA-PCVEADDAVCRCAYGYY 114
Query: 121 AH--AGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNC 174
G C C G+G++ QNT C+ CP GT+S ++ + C P C
Sbjct: 115 QDETTGRCEACRVCEAGSGLVFSCQDKQNTVCEECPDGTYSDEANHVDPCLPCTVC 170
Score = 49.3 bits (116), Expect = 4e-06
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 115 CRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPG-TFSASSSSSEQCQPHRN 173
C TG + H+G C + +C G GV P +Q T C+PC TFS S++E C+P
Sbjct: 32 CPTGLYTHSGECCK--ACNLGEGVAQPCGANQ-TVCEPCLDSVTFSDVVSATEPCKPCTE 88
Query: 174 CTALGLALNVPGSSSHDTLCTSCTGFPLSTRVPGAEEC 211
C L +++ P + D +C G+ E C
Sbjct: 89 CVGL-QSMSAPCVEADDAVCRCAYGYYQDETTGRCEAC 125
>gi|23238200 RELT tumor necrosis factor receptor precursor [Homo
sapiens]
Length = 430
Score = 57.8 bits (138), Expect = 1e-08
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 132 CPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLALNVPGSSSHDT 191
CPPG P Q T C+PCPPGTFSA+ SS CQPH C+ G ++ DT
Sbjct: 32 CPPGEEPDLD--PGQGTLCRPCPPGTFSAAWGSS-PCQPHARCSLWRRLEAQVGMATRDT 88
Query: 192 LCTSC 196
LC C
Sbjct: 89 LCGDC 93
Score = 35.4 bits (80), Expect = 0.062
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 11 LLCLVLALPALLPVPAVRGVAETPTYPWRDAETGERLVCAQCPPGTFVQRPCRRDSPTTC 70
L C ++ LP L + + P D + G+ +C CPPGTF +
Sbjct: 10 LSCFLMLLPWPLATLTSTTLWQCPPGEEPDLDPGQGTLCRPCPPGTF-------SAAWGS 62
Query: 71 GPCPPRHYTQFWNYLE 86
PC P W LE
Sbjct: 63 SPCQPHARCSLWRRLE 78
>gi|21361873 RELT tumor necrosis factor receptor precursor [Homo
sapiens]
Length = 430
Score = 57.8 bits (138), Expect = 1e-08
Identities = 30/65 (46%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 132 CPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLALNVPGSSSHDT 191
CPPG P Q T C+PCPPGTFSA+ SS CQPH C+ G ++ DT
Sbjct: 32 CPPGEEPDLD--PGQGTLCRPCPPGTFSAAWGSS-PCQPHARCSLWRRLEAQVGMATRDT 88
Query: 192 LCTSC 196
LC C
Sbjct: 89 LCGDC 93
Score = 35.4 bits (80), Expect = 0.062
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 11 LLCLVLALPALLPVPAVRGVAETPTYPWRDAETGERLVCAQCPPGTFVQRPCRRDSPTTC 70
L C ++ LP L + + P D + G+ +C CPPGTF +
Sbjct: 10 LSCFLMLLPWPLATLTSTTLWQCPPGEEPDLDPGQGTLCRPCPPGTF-------SAAWGS 62
Query: 71 GPCPPRHYTQFWNYLE 86
PC P W LE
Sbjct: 63 SPCQPHARCSLWRRLE 78
>gi|4759246 tumor necrosis factor receptor superfamily, member 18
isoform 1 precursor [Homo sapiens]
Length = 241
Score = 53.5 bits (127), Expect = 2e-07
Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Query: 101 EARACHATHNRACRCRTG---------------FFAHAGFCL--EHASCPPGAGVIAPGT 143
+AR C R CR G F C H CPPG GV + G
Sbjct: 46 DARCCRVHTTRCCRDYPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGK 105
Query: 144 PSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLALNVPGSSSHDTLC 193
S QC C GTFS C+P +CT G PG+ +H+ +C
Sbjct: 106 FSFGFQCIDCASGTFSGGHEG--HCKPWTDCTQFGFLTVFPGNKTHNAVC 153
>gi|23238197 tumor necrosis factor receptor superfamily, member 18
isoform 3 precursor [Homo sapiens]
Length = 234
Score = 53.5 bits (127), Expect = 2e-07
Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Query: 101 EARACHATHNRACRCRTG---------------FFAHAGFCL--EHASCPPGAGVIAPGT 143
+AR C R CR G F C H CPPG GV + G
Sbjct: 46 DARCCRVHTTRCCRDYPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGK 105
Query: 144 PSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLALNVPGSSSHDTLC 193
S QC C GTFS C+P +CT G PG+ +H+ +C
Sbjct: 106 FSFGFQCIDCASGTFSGGHEG--HCKPWTDCTQFGFLTVFPGNKTHNAVC 153
>gi|23510423 tumor necrosis factor receptor superfamily, member 6
isoform 3 precursor [Homo sapiens]
Length = 220
Score = 52.8 bits (125), Expect = 4e-07
Identities = 39/109 (35%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 52 CPPGTFVQRPC--RRDSPTTCGPCPP-RHYTQFWNYLERCRYCNVLCGERE--EEARACH 106
CPPG R C D P C PC + YT ++ +CR C LC E E C
Sbjct: 63 CPPGERKARDCTVNGDEPD-CVPCQEGKEYTDKAHFSSKCRRCR-LCDEGHGLEVEINCT 120
Query: 107 ATHNRACRCRTGFFAHAGFCLEHASCPPGA----GVIAPGTPSQNTQCQ 151
T N CRC+ FF ++ C EH C P G+I T + NT+C+
Sbjct: 121 RTQNTKCRCKPNFFCNSTVC-EH--CDPCTKCEHGIIKECTLTSNTKCK 166
>gi|23510421 tumor necrosis factor receptor superfamily, member 6
isoform 2 precursor [Homo sapiens]
Length = 314
Score = 52.8 bits (125), Expect = 4e-07
Identities = 39/109 (35%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 52 CPPGTFVQRPC--RRDSPTTCGPCPP-RHYTQFWNYLERCRYCNVLCGERE--EEARACH 106
CPPG R C D P C PC + YT ++ +CR C LC E E C
Sbjct: 63 CPPGERKARDCTVNGDEPD-CVPCQEGKEYTDKAHFSSKCRRCR-LCDEGHGLEVEINCT 120
Query: 107 ATHNRACRCRTGFFAHAGFCLEHASCPPGA----GVIAPGTPSQNTQCQ 151
T N CRC+ FF ++ C EH C P G+I T + NT+C+
Sbjct: 121 RTQNTKCRCKPNFFCNSTVC-EH--CDPCTKCEHGIIKECTLTSNTKCK 166
>gi|4507583 tumor necrosis factor receptor superfamily, member 6
isoform 1 precursor [Homo sapiens]
Length = 335
Score = 52.8 bits (125), Expect = 4e-07
Identities = 39/109 (35%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 52 CPPGTFVQRPC--RRDSPTTCGPCPP-RHYTQFWNYLERCRYCNVLCGERE--EEARACH 106
CPPG R C D P C PC + YT ++ +CR C LC E E C
Sbjct: 63 CPPGERKARDCTVNGDEPD-CVPCQEGKEYTDKAHFSSKCRRCR-LCDEGHGLEVEINCT 120
Query: 107 ATHNRACRCRTGFFAHAGFCLEHASCPPGA----GVIAPGTPSQNTQCQ 151
T N CRC+ FF ++ C EH C P G+I T + NT+C+
Sbjct: 121 RTQNTKCRCKPNFFCNSTVC-EH--CDPCTKCEHGIIKECTLTSNTKCK 166
>gi|4507587 tumor necrosis factor receptor superfamily, member 7
precursor [Homo sapiens]
Length = 260
Score = 52.4 bits (124), Expect = 5e-07
Identities = 47/173 (27%), Positives = 64/173 (36%), Gaps = 43/173 (24%)
Query: 12 LCLVLALPALLPVPAVRGVAETPTYPWRDAETGERLVCAQCPPGTFVQRPC-RRDSPTTC 70
LC++ L L PA + E + W +L C C PGTF+ + C + C
Sbjct: 9 LCVLGTLVGLSATPAPKSCPER--HYWAQG----KLCCQMCEPGTFLVKDCDQHRKAAQC 62
Query: 71 GPC------PPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTGFFAHAG 124
PC P H+T+ + E CR+CN R C T N C CR G+
Sbjct: 63 DPCIPGVSFSPDHHTR--PHCESCRHCN-----SGLLVRNCTITANAECACRNGWQCRDK 115
Query: 125 FCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTAL 177
C T+C P P + +A SS+ PH T L
Sbjct: 116 EC---------------------TECDPLPNPSLTA--RSSQALSPHPQPTHL 145
>gi|21361086 tumor necrosis factor receptor superfamily, member 10a
[Homo sapiens]
Length = 468
Score = 50.8 bits (120), Expect = 1e-06
Identities = 38/121 (31%), Positives = 48/121 (39%), Gaps = 16/121 (13%)
Query: 35 TYPWRDAETGERLVCAQCPPGTFVQRPCRRDSPTTCGPCPPR-HYTQFWNYLERCRYCNV 93
T W + GE CPPG+ R + P C C YT N L C C
Sbjct: 120 TQQWEHSPLGEL-----CPPGSH-----RSEHPGACNRCTEGVGYTNASNNLFACLPCTA 169
Query: 94 LCGEREEEARACHATHNRACRCRTGFFAH---AGFCLE-HASCPPGAGVIAPGTPSQNTQ 149
C EEE C T N AC+C+ G F + A C + CP G + TP + +
Sbjct: 170 -CKSDEEERSPCTTTRNTACQCKPGTFRNDNSAEMCRKCSRGCPRGMVKVKDCTPWSDIE 228
Query: 150 C 150
C
Sbjct: 229 C 229
>gi|4507575 tumor necrosis factor receptor 1 precursor [Homo
sapiens]
Length = 455
Score = 43.5 bits (101), Expect = 2e-04
Identities = 41/156 (26%), Positives = 56/156 (35%), Gaps = 13/156 (8%)
Query: 47 LVCAQCPPGTFVQRPCRRDSPTT-CGPCPPRHYTQFWNYLERCRYCNVLCGER-EEEARA 104
+ C +C GT++ C T C C +T N+L C C+ E + E +
Sbjct: 57 ICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISS 116
Query: 105 CHATHNRACRCRTGFFAHAGF-----CLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFS 159
C + C CR + H C + C G V QNT C C G F
Sbjct: 117 CTVDRDTVCGCRKNQYRHYWSENLFQCFNCSLCLNGT-VHLSCQEKQNTVC-TCHAGFFL 174
Query: 160 ASSS--SSEQCQPHRNCTALGLAL--NVPGSSSHDT 191
+ S C+ CT L L NV G+ T
Sbjct: 175 RENECVSCSNCKKSLECTKLCLPQIENVKGTEDSGT 210
Score = 32.3 bits (72), Expect = 0.52
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 24/87 (27%)
Query: 96 GEREEEARAC------HATHNRAC--RCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQN 147
G+RE+ C H +N C +C G + + CP P Q+
Sbjct: 35 GDREKRDSVCPQGKYIHPQNNSICCTKCHKGTYLYN-------DCPG---------PGQD 78
Query: 148 TQCQPCPPGTFSASSSSSEQCQPHRNC 174
T C+ C G+F+AS + C C
Sbjct: 79 TDCRECESGSFTASENHLRHCLSCSKC 105
>gi|84490388 R-spondin1 [Homo sapiens]
Length = 263
Score = 43.1 bits (100), Expect = 3e-04
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 14/124 (11%)
Query: 49 CAQCPPGTFV--QRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACH 106
C +C P F+ +R R CPP ++ + +C C + E AC
Sbjct: 53 CLKCSPKLFILLERNDIRQVGVCLPSCPPGYFDARNPDMNKCIKCKI------EHCEACF 106
Query: 107 ATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTP--SQNTQCQPCPPGTFSASSSS 164
+ HN +C+ G + H G C + +CP G+ A GT S QC+ + S
Sbjct: 107 S-HNFCTKCKEGLYLHKGRC--YPACPEGSSA-ANGTMECSSPAQCEMSEWSPWGPCSKK 162
Query: 165 SEQC 168
+ C
Sbjct: 163 QQLC 166
>gi|11140823 X-linked ectodysplasin receptor [Homo sapiens]
Length = 297
Score = 43.1 bits (100), Expect = 3e-04
Identities = 30/111 (27%), Positives = 40/111 (36%), Gaps = 9/111 (8%)
Query: 44 GERLVCAQCPPGTFVQRPCR--RDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEE 101
G + C +C PG + + C C CPPR Y W + RC+ C +
Sbjct: 13 GRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGH-HRCQSCITCAVINRVQ 71
Query: 102 ARACHATHNRAC-RCRTGFFAHAGF-CLEHASCPPGAGVIAPGTPSQNTQC 150
C AT N C C F+ L+ C P TP+ QC
Sbjct: 72 KVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIP----CTKQTPTSEVQC 118
>gi|181336739 multiple EGF-like-domains 11 [Homo sapiens]
Length = 1044
Score = 42.4 bits (98), Expect = 5e-04
Identities = 41/136 (30%), Positives = 47/136 (34%), Gaps = 41/136 (30%)
Query: 52 CPPGTF---VQRPCRRDSPTTCGP------CPPRHYTQFWNYLERCRYCNVLCGEREEEA 102
C PGT Q PC+ +C P C P YT YC LC
Sbjct: 176 CAPGTHGKGCQLPCQCRHGASCDPRAGECLCAPG-YTGV--------YCEELCPP----- 221
Query: 103 RACHATH-NRACRCRTGFFAH--AGFCLEHASCPPG-AGVIAPGTPSQNTQCQPCPPGTF 158
H H C C+ G H G C +CPPG G + QPCPPGTF
Sbjct: 222 -GSHGAHCELRCPCQNGGTCHHITGEC----ACPPGWTGAVC---------AQPCPPGTF 267
Query: 159 SASSSSSEQCQPHRNC 174
+ S C C
Sbjct: 268 GQNCSQDCPCHHGGQC 283
Score = 29.3 bits (64), Expect = 4.4
Identities = 35/135 (25%), Positives = 45/135 (33%), Gaps = 32/135 (23%)
Query: 49 CAQ-CPPGTFVQ---RPCRRDSPTTC----GPCPPRHYTQFWNYLERCRYCNVLCGEREE 100
C+Q CPPG + C + +C G C H T W L +C C
Sbjct: 693 CSQACPPGFWGPACFHACSCHNGASCSAEDGAC---HCTPGWTGL----FCTQRC----- 740
Query: 101 EARACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQC-QPCPPGTFS 159
A R C+C+ G ASC +G T C Q C PGTF
Sbjct: 741 PAAFFGKDCGRVCQCQNG-----------ASCDHISGKCTCRTGFTGQHCEQRCAPGTFG 789
Query: 160 ASSSSSEQCQPHRNC 174
+C + C
Sbjct: 790 YGCQQLCECMNNSTC 804
Score = 28.1 bits (61), Expect = 9.9
Identities = 36/154 (23%), Positives = 48/154 (31%), Gaps = 35/154 (22%)
Query: 54 PGTFVQRPCRRDSPTTCGP------CPPRHYTQFWNYLERCRY------CNVLCGEREEE 101
PG + PC D+ +C P C P N E C C + C +
Sbjct: 356 PGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCN--ESCPVGYYGDGCQLPC--TCQN 411
Query: 102 ARACHATHNRACRCRTGFFAH-------AGF----------CLEHASCPPGAGVIAPGTP 144
CH+ C C GF AG C +C P G
Sbjct: 412 GADCHSITG-GCTCAPGFMGEVCAVSCAAGTYGPNCSSICSCNNGGTCSPVDGSCTCKEG 470
Query: 145 SQNTQCQ-PCPPGTFSASSSSSEQCQPHRNCTAL 177
Q C PCP GT+ + + S C C+ +
Sbjct: 471 WQGLDCTLPCPSGTWGLNCNESCTCANGAACSPI 504
>gi|134244285 Notch homolog 3 [Homo sapiens]
Length = 2321
Score = 41.6 bits (96), Expect = 9e-04
Identities = 55/186 (29%), Positives = 66/186 (35%), Gaps = 43/186 (23%)
Query: 15 VLALPALLPVPAVRGVAETPTYPWRDAETGERLVCAQ---------CPPGTFVQRPCRRD 65
V ALP LL + A G A P G R C Q CPPG +R C+ +
Sbjct: 24 VRALPLLLLL-AGPGAAAPPCLDGSPCANGGR--CTQLPSREAACLCPPGWVGER-CQLE 79
Query: 66 SPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTGF----FA 121
P GPC R Q +V+ G T +CRC GF +
Sbjct: 80 DPCHSGPCAGRGVCQ----------SSVVAG-----------TARFSCRCPRGFRGPDCS 118
Query: 122 HAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSS-EQCQPHRNCTALGLA 180
CL S P G P C CPPG S S ++C+ C G
Sbjct: 119 LPDPCL---SSPCAHGARCSVGPDGRFLCS-CPPGYQGRSCRSDVDECRVGEPCRHGGTC 174
Query: 181 LNVPGS 186
LN PGS
Sbjct: 175 LNTPGS 180
Score = 35.4 bits (80), Expect = 0.062
Identities = 63/208 (30%), Positives = 78/208 (37%), Gaps = 49/208 (23%)
Query: 46 RLVCAQCPPGTF-VQRPCRRDSPTTCGPCPPRHYTQFWNYLERC-------------RYC 91
R +C+ CPPGT V D CGP PP + C Y
Sbjct: 1143 RYLCS-CPPGTLGVLCEINEDD---CGPGPPLDSGPRCLHNGTCVDLVGGFRCTCPPGYT 1198
Query: 92 NVLCGEREEEAR--ACHATHNRACRCRTGFFAHAGF-CLEHA--SCPPGAGVIAP--GTP 144
+ C E R ACHA H R C G GF CL HA S P V++P P
Sbjct: 1199 GLRCEADINECRSGACHAAHTRDCLQDPG----GGFRCLCHAGFSGPRCQTVLSPCESQP 1254
Query: 145 SQN-TQCQPCP-PG---TFSASSSS---SEQCQ-PHRNCTALGLALNVP-GSSSHDTLCT 194
Q+ QC+P P PG TF+ + +C+ R+C L + VP + C
Sbjct: 1255 CQHGGQCRPSPGPGGGLTFTCHCAQPFWGPRCERVARSCRELQCPVGVPCQQTPRGPRCA 1314
Query: 195 --------SCTGFPLSTRVPGAEECERA 214
SC FP S PGA A
Sbjct: 1315 CPPGLSGPSCRSFPGSP--PGASNASCA 1340
Score = 31.6 bits (70), Expect = 0.89
Identities = 49/190 (25%), Positives = 64/190 (33%), Gaps = 28/190 (14%)
Query: 46 RLVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLE--RCR----YCNVLCGERE 99
R +C+ CPPG + R CR D P RH N RC+ Y LC
Sbjct: 141 RFLCS-CPPG-YQGRSCRSDVDECRVGEPCRHGGTCLNTPGSFRCQCPAGYTGPLCENPA 198
Query: 100 EEARACHATHNRACRCRTGFFAHAGFCL---EHASCP------PG-----AGVIAPGTPS 145
+ CR ++G + CL E +C PG G G +
Sbjct: 199 VPCAPSPCRNGGTCR-QSGDLTYDCACLPGFEGQNCEVNVDDCPGHRCLNGGTCVDGVNT 257
Query: 146 QNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLALNVPGSSSHDTLCTSCTGFPLSTRV 205
N QC P G F Q QP+ C G N G S C G+ +
Sbjct: 258 YNCQCPPEWTGQFCTEDVDECQLQPNA-CHNGGTCFNTLGGHS----CVCVNGWTGESCS 312
Query: 206 PGAEECERAV 215
++C AV
Sbjct: 313 QNIDDCATAV 322
>gi|239757286 PREDICTED: similar to Fc fragment of IgG binding protein
[Homo sapiens]
Length = 1472
Score = 41.2 bits (95), Expect = 0.001
Identities = 37/119 (31%), Positives = 46/119 (38%), Gaps = 22/119 (18%)
Query: 73 CPPRHYTQFWNYLERCRY-CNVLCGEREEEARACHATHNRACRCRTGFFAHAGFCLEHAS 131
CPP ++ E C Y C + CG+ C + + C C GF CL AS
Sbjct: 1197 CPPH------SHYEACSYGCPLSCGDLPVPG-GCGSECHEGCVCDEGFALSGESCLPLAS 1249
Query: 132 C---------PPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLAL 181
C PPG PG P ++ C G S SSS C PH C G +L
Sbjct: 1250 CGCVHQGTYHPPGQ-TFYPG-PGCDSLCHCQEGGLVSCESSS---CGPHEACQPSGGSL 1303
>gi|239751787 PREDICTED: hypothetical protein XP_002348012 [Homo
sapiens]
Length = 3003
Score = 41.2 bits (95), Expect = 0.001
Identities = 37/119 (31%), Positives = 46/119 (38%), Gaps = 22/119 (18%)
Query: 73 CPPRHYTQFWNYLERCRY-CNVLCGEREEEARACHATHNRACRCRTGFFAHAGFCLEHAS 131
CPP ++ E C Y C + CG+ C + + C C GF CL AS
Sbjct: 1136 CPPH------SHYEACSYGCPLSCGDLPVPG-GCGSECHEGCVCDEGFALSGESCLPLAS 1188
Query: 132 C---------PPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLAL 181
C PPG PG P ++ C G S SSS C PH C G +L
Sbjct: 1189 CGCVHQGTYHPPGQ-TFYPG-PGCDSLCHCQEGGLVSCESSS---CGPHEACQPSGGSL 1242
Score = 32.7 bits (73), Expect = 0.40
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 126 CLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGLALNVPG 185
C E SC +G+ Q CPPG + + C R L + N+
Sbjct: 2794 CSERCSCSSSSGLTC--------QAAGCPPGRVCEVKAEARNCWATRGLCVLSVGANLTT 2845
Query: 186 SSSHDTLCTSCTGFPLSTRVPGAE 209
TS + LS+R PG +
Sbjct: 2846 FDGARGATTSPGVYELSSRCPGLQ 2869
Score = 28.9 bits (63), Expect = 5.8
Identities = 24/100 (24%), Positives = 32/100 (32%), Gaps = 16/100 (16%)
Query: 105 CHATHNRACRCRTGFFAHAGFCLEHASCP--------PGAGVIAPGTPSQNTQCQPCPPG 156
C + C C GF C+ C P V PG P +C+ P G
Sbjct: 2365 CESACREGCVCDAGFVLSGDTCVPVGQCGCLHDGRYYPLGEVFYPG-PECERRCECGPGG 2423
Query: 157 TFSASSSSSEQCQPHRNCTALGLALNVPGSSSHDTLCTSC 196
+ ++ C PH C L + H T C C
Sbjct: 2424 HVTCQEGAA--CGPHEEC-----RLEDGVQACHATGCGRC 2456
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,243,682
Number of Sequences: 37866
Number of extensions: 850286
Number of successful extensions: 3288
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 125
Number of HSP's that attempted gapping in prelim test: 2906
Number of HSP's gapped (non-prelim): 390
length of query: 300
length of database: 18,247,518
effective HSP length: 102
effective length of query: 198
effective length of database: 14,385,186
effective search space: 2848266828
effective search space used: 2848266828
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.