Guide to the Human Genome
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Name: LOC100290309 Sequence: fasta or formatted (3003aa) NCBI GI: 239751787
Description:

PREDICTED: hypothetical protein XP_002348012

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0        269           3
 C cysteine            7.4        223           1
 D aspartate           5.0        149           2
 E glutamate           4.6        139           2
 F phenylalanine       3.0         89           2
 G glycine            10.9        328           3
 H histidine           2.5         74           1
 I isoleucine          1.7         50           1
 K lysine              2.3         69           2
 L leucine             8.2        247           2
 M methionine          0.7         21           2
 N asparagine          3.1         93           2
 P proline             6.7        200           2
 Q glutamine           5.0        150           2
 R arginine            4.3        128           2
 S serine              7.2        216           4
 T threonine           5.4        161           3
 V valine              8.7        260           3
 W tryptophan          1.5         45           2
 Y tyrosine            3.1         92           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348012 
FCGBP                 0.854   Fc fragment of IgG binding protein 
LOC100133944          0.456   PREDICTED: similar to Fc fragment of IgG binding pr...
LOC100293676          0.424   PREDICTED: similar to Fc fragment of IgG binding pr...
LOC100293643          0.178   PREDICTED: similar to Fc fragment of IgG binding pr...
ZAN                   0.134   zonadhesin isoform 3 
ZAN                   0.130   zonadhesin isoform 6 
TECTA                 0.129   tectorin alpha precursor 
MUC5B                 0.061   mucin 5, subtype B, tracheobronchial 
LOC100132635          0.061   PREDICTED: similar to mucin 5, partial 
SSPO                  0.060   SCO-spondin 
MUC5AC                0.059   mucin 5AC 
VWF                   0.056   von Willebrand factor preproprotein 
MUC2                  0.050   mucin 2 precursor 
C12orf64              0.046   PREDICTED: chromosome 12 open reading frame 64 [Hom...
C12orf64              0.046   PREDICTED: chromosome 12 open reading frame 64 [Hom...
C12orf64              0.046   PREDICTED: hypothetical protein LOC283310 
MUC6                  0.045   mucin 6, gastric 
OTOG                  0.045   PREDICTED: otogelin isoform 1 
OTOG                  0.045   PREDICTED: otogelin isoform 2 
OTOG                  0.045   PREDICTED: otogelin isoform 2 
OTOG                  0.045   PREDICTED: otogelin isoform 1 
OTOG                  0.045   PREDICTED: otogelin isoform 2 
OTOG                  0.045   PREDICTED: otogelin isoform 1 
LOC100291118          0.034   PREDICTED: hypothetical protein XP_002347351 
LOC100287737          0.034   PREDICTED: hypothetical protein XP_002343203 
LOC100294420          0.032   PREDICTED: similar to mucin 2 
KCP                   0.029   cysteine rich BMP regulator 2 isoform 1 
BMPER                 0.025   BMP-binding endothelial regulator precursor protein ...
LOC100293409          0.023   PREDICTED: similar to Mucin-19 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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