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Search of human proteins with 4507581
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens]
(277 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens] 595 e-170
gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens] 372 e-103
gi|4507565 tumor necrosis factor receptor superfamily, member 11... 150 9e-37
gi|4505039 lymphotoxin beta receptor [Homo sapiens] 118 5e-27
gi|4507577 tumor necrosis factor receptor 2 precursor [Homo sapi... 114 7e-26
gi|148743793 osteoprotegerin precursor [Homo sapiens] 103 2e-22
gi|23200041 tumor necrosis factor receptor superfamily, member 1... 101 8e-22
gi|14790170 tumor necrosis factor receptor superfamily, member 6... 83 2e-16
gi|4507585 tumor necrosis factor receptor superfamily, member 6b... 83 2e-16
gi|4507579 tumor necrosis factor receptor superfamily, member 4 ... 77 2e-14
gi|7657039 tumor necrosis factor receptor superfamily, member 21... 76 3e-14
gi|4505393 nerve growth factor receptor precursor [Homo sapiens] 70 3e-12
gi|4507587 tumor necrosis factor receptor superfamily, member 7 ... 69 3e-12
gi|23510423 tumor necrosis factor receptor superfamily, member 6... 63 3e-10
gi|23510421 tumor necrosis factor receptor superfamily, member 6... 63 3e-10
gi|4507583 tumor necrosis factor receptor superfamily, member 6 ... 63 3e-10
gi|5730095 tumor necrosis factor receptor superfamily, member 9 ... 61 9e-10
gi|4507575 tumor necrosis factor receptor 1 precursor [Homo sapi... 54 1e-07
gi|4507569 tumor necrosis factor receptor superfamily, member 25... 50 3e-06
gi|23200023 tumor necrosis factor receptor superfamily, member 2... 48 1e-05
gi|23200021 tumor necrosis factor receptor superfamily, member 2... 48 1e-05
gi|89142745 tumor necrosis factor receptor superfamily, member 2... 48 1e-05
gi|4759246 tumor necrosis factor receptor superfamily, member 18... 46 3e-05
gi|23238197 tumor necrosis factor receptor superfamily, member 1... 46 3e-05
gi|68348711 tumor necrosis factor receptor superfamily, member 8... 46 4e-05
gi|23238194 tumor necrosis factor receptor superfamily, member 1... 42 5e-04
gi|38569482 hypothetical protein LOC57535 [Homo sapiens] 42 5e-04
gi|110611156 laminin, gamma 3 precursor [Homo sapiens] 42 6e-04
gi|224494019 tumor necrosis factor receptor superfamily, member ... 41 0.001
gi|23238204 tumor necrosis factor receptor superfamily, member 1... 41 0.001
>gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens]
Length = 277
Score = 595 bits (1534), Expect = e-170
Identities = 277/277 (100%), Positives = 277/277 (100%)
Query: 1 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL 60
MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
Sbjct: 1 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL 60
Query: 61 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV 120
PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
Sbjct: 61 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV 120
Query: 121 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTN 180
LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTN
Sbjct: 121 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTN 180
Query: 181 KTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFIKKVAKKPTNKAPHPKQEPQEINFPD 240
KTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFIKKVAKKPTNKAPHPKQEPQEINFPD
Sbjct: 181 KTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFIKKVAKKPTNKAPHPKQEPQEINFPD 240
Query: 241 DLPGSNTAAPVQETLHGCQPVTQEDGKESRISVQERQ 277
DLPGSNTAAPVQETLHGCQPVTQEDGKESRISVQERQ
Sbjct: 241 DLPGSNTAAPVQETLHGCQPVTQEDGKESRISVQERQ 277
>gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens]
Length = 203
Score = 372 bits (956), Expect = e-103
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL 60
MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
Sbjct: 1 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL 60
Query: 61 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV 120
PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
Sbjct: 61 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV 120
Query: 121 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWT 165
LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWT
Sbjct: 121 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWT 165
Score = 40.4 bits (93), Expect = 0.002
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 105 CEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPW 164
C E + + C C L C PG + T ++T C PC F + + CH
Sbjct: 26 CREKQYLINSQC--CSL---CQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQH 80
Query: 165 TSCETK-DLVVQQAGTNKTDVVC 186
C+ L VQQ GT++TD +C
Sbjct: 81 KYCDPNLGLRVQQKGTSETDTIC 103
>gi|4507565 tumor necrosis factor receptor superfamily, member 11a
precursor [Homo sapiens]
Length = 616
Score = 150 bits (380), Expect = 9e-37
Identities = 80/216 (37%), Positives = 109/216 (50%), Gaps = 2/216 (0%)
Query: 4 LPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECLPCG 63
L L C L L A+ PP EK Y +CC+ C+PG+ + S CT +++ CLPCG
Sbjct: 14 LLLLCALLARLQVALQIAPPCTS-EKHYEHLGRCCNKCEPGKYMSSKCTTTSDSVCLPCG 72
Query: 64 ESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCVLHR 123
E+LD+WN E C HK CD L G S T C C G+H S+ CE C +
Sbjct: 73 PDEYLDSWNEEDKCLLHKVCDTGKALVAVVAGNSTTPRRCACTAGYH-WSQDCECCRRNT 131
Query: 124 SCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTNKTD 183
C+PG G + DT+C+PC G+FS+ S+ +KC PWT+C V+ GT K+D
Sbjct: 132 ECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCRPWTNCTFLGKRVEHHGTEKSD 191
Query: 184 VVCGPQDRLRALVVIPIIFGILFAILLVLVFIKKVA 219
VC R P ++ ILL+ + VA
Sbjct: 192 AVCSSSLPARKPPNEPHVYLPGLIILLLFASVALVA 227
>gi|4505039 lymphotoxin beta receptor [Homo sapiens]
Length = 435
Score = 118 bits (296), Expect = 5e-27
Identities = 90/294 (30%), Positives = 129/294 (43%), Gaps = 44/294 (14%)
Query: 5 PLQCVLWGCLLTAVHPE--PPTA-----CR--EKQYLINSQ--CCSLCQPGQKLVSDCTE 53
PL L+G LL A P+ PP A CR EK+Y CCS C PG + + C+
Sbjct: 16 PLVLGLFG-LLAASQPQAVPPYASENQTCRDQEKEYYEPQHRICCSRCPPGTYVSAKCSR 74
Query: 54 FTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTS 113
+T C C E+ + + WN T C + CDP +GL TS+ T C C+ G C +
Sbjct: 75 IRDTVCATCAENSYNEHWNYLTICQLCRPCDPVMGLEEIAPCTSKRKTQCRCQPGMFCAA 134
Query: 114 EA--CESCVLHRSCSPGFGVK-QIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETK 170
A C C L C PG + + G + C PC G F N SS +C P T CE +
Sbjct: 135 WALECTHCELLSDCPPGTEAELKDEVGKGNNHCVPCKAGHFQNTSSPSARCQPHTRCENQ 194
Query: 171 DLVVQQAGTNKTDVVCG------PQDRLRALVVIPIIFGILFAILLVLVFI--------- 215
LV GT ++D C P + ++++ ++ + F +LL VF
Sbjct: 195 GLVEAAPGTAQSDTTCKNPLEPLPPEMSGTMLMLAVLLPLAFFLLLATVFSCIWKSHPSL 254
Query: 216 -----KKVAKKPTNKAPHP---KQEPQEIN--FPD----DLPGSNTAAPVQETL 255
+ ++P + P+P EP + + FPD LP S +PV L
Sbjct: 255 CRKLGSLLKRRPQGEGPNPVAGSWEPPKAHPYFPDLVQPLLPISGDVSPVSTGL 308
>gi|4507577 tumor necrosis factor receptor 2 precursor [Homo
sapiens]
Length = 461
Score = 114 bits (286), Expect = 7e-26
Identities = 66/187 (35%), Positives = 88/187 (47%), Gaps = 14/187 (7%)
Query: 16 TAVHPEPPTACREKQYLINS--QCCSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNR 73
T PEP + CR ++Y + CCS C PGQ CT+ ++T C C +S + WN
Sbjct: 30 TPYAPEPGSTCRLREYYDQTAQMCCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNW 89
Query: 74 ETHCHQ-HKYCDPNLGLRVQ-QKGTSETDTICTCEEGWHCT---SEACESCVLHRSCSPG 128
C C + +V+ Q T E + ICTC GW+C E C C R C PG
Sbjct: 90 VPECLSCGSRCSSD---QVETQACTREQNRICTCRPGWYCALSKQEGCRLCAPLRKCRPG 146
Query: 129 FGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTNKTDVVCGP 188
FGV + T SD +C+PC G FSN +S+ + C P C VV G D VC
Sbjct: 147 FGVARPGTETSDVVCKPCAPGTFSNTTSSTDICRPHQICN----VVAIPGNASMDAVCTS 202
Query: 189 QDRLRAL 195
R++
Sbjct: 203 TSPTRSM 209
>gi|148743793 osteoprotegerin precursor [Homo sapiens]
Length = 401
Score = 103 bits (257), Expect = 2e-22
Identities = 56/167 (33%), Positives = 79/167 (47%), Gaps = 8/167 (4%)
Query: 22 PPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHK 81
PP + + C C PG L CT +T C PC + + D+W+ C
Sbjct: 25 PPKYLHYDEETSHQLLCDKCPPGTYLKQHCTAKWKTVCAPCPDHYYTDSWHTSDEC---L 81
Query: 82 YCDPNLG--LRVQQKGTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVS 139
YC P V+Q+ + +C C+EG + E C+ HRSC PGFGV Q T
Sbjct: 82 YCSPVCKELQYVKQECNRTHNRVCECKEGRYLE---IEFCLKHRSCPPGFGVVQAGTPER 138
Query: 140 DTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTNKTDVVC 186
+T+C+ CP GFFSN +S+ C T+C L++ Q G D +C
Sbjct: 139 NTVCKRCPDGFFSNETSSKAPCRKHTNCSVFGLLLTQKGNATHDNIC 185
Score = 40.4 bits (93), Expect = 0.002
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 26 CREKQYLINSQCCS--LCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYC 83
C+E +YL C C PG +V T T C C + F + + + C +H C
Sbjct: 107 CKEGRYLEIEFCLKHRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNETSSKAPCRKHTNC 166
Query: 84 DPNLGLRVQQKGTSETDTICT 104
GL + QKG + D IC+
Sbjct: 167 SV-FGLLLTQKGNATHDNICS 186
>gi|23200041 tumor necrosis factor receptor superfamily, member 14
precursor [Homo sapiens]
Length = 283
Score = 101 bits (251), Expect = 8e-22
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 25 ACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCD 84
+C+E +Y + S+CC C PG ++ C E T T C PC ++ N + C Q + CD
Sbjct: 41 SCKEDEYPVGSECCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQMCD 100
Query: 85 PNLGLRVQQKGTSETDTICTCEEGWHC---TSEACESCVLHRSCSPGFGVKQIATGVSDT 141
P +GLR + + + +C C G C + C +C + + SPG V++ T DT
Sbjct: 101 PAMGLRASRNCSRTENAVCGCSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQDT 160
Query: 142 ICEPCPVGFFSNVSSAFEKCHPWTSC 167
+C+ CP G FS + E+C T C
Sbjct: 161 LCQNCPPGTFS-PNGTLEECQHQTKC 185
Score = 42.4 bits (98), Expect = 5e-04
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 106 EEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWT 165
E+ + SE C C SPG+ VK+ ++ T+CEPCP G + + KC
Sbjct: 44 EDEYPVGSECCPKC------SPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQ 97
Query: 166 SCETKDLVVQQAGTNKTD-VVCG 187
C+ + ++T+ VCG
Sbjct: 98 MCDPAMGLRASRNCSRTENAVCG 120
>gi|14790170 tumor necrosis factor receptor superfamily, member 6b
[Homo sapiens]
Length = 300
Score = 83.2 bits (204), Expect = 2e-16
Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 8/151 (5%)
Query: 38 CSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTS 97
C+ C PG + C + T C PC + WN C +YC+ G R ++
Sbjct: 49 CAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERC---RYCNVLCGEREEEARAC 105
Query: 98 ET--DTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVS 155
+ C C G+ + C + H SC PG GV T +T C+PCP G FS S
Sbjct: 106 HATHNRACRCRTGFFAHAGFC---LEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASS 162
Query: 156 SAFEKCHPWTSCETKDLVVQQAGTNKTDVVC 186
S+ E+C P +C L + G++ D +C
Sbjct: 163 SSSEQCQPHRNCTALGLALNVPGSSSHDTLC 193
Score = 47.8 bits (112), Expect = 1e-05
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 17 AVHPEPPTACREKQ-YLINSQCC---SLCQPGQKLVSDCTEFTETECLPCGESEFLDTWN 72
A H ACR + + ++ C + C PG +++ T T+C PC F + +
Sbjct: 104 ACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSS 163
Query: 73 RETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCT-----SEACESCVLHRSCSP 127
C H+ C LGL + G+S DT+CT G+ + +E CE V+
Sbjct: 164 SSEQCQPHRNCTA-LGLALNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAFQ 222
Query: 128 GFGVKQI 134
+K++
Sbjct: 223 DISIKRL 229
>gi|4507585 tumor necrosis factor receptor superfamily, member 6b
[Homo sapiens]
Length = 300
Score = 83.2 bits (204), Expect = 2e-16
Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 8/151 (5%)
Query: 38 CSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTS 97
C+ C PG + C + T C PC + WN C +YC+ G R ++
Sbjct: 49 CAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERC---RYCNVLCGEREEEARAC 105
Query: 98 ET--DTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVS 155
+ C C G+ + C + H SC PG GV T +T C+PCP G FS S
Sbjct: 106 HATHNRACRCRTGFFAHAGFC---LEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASS 162
Query: 156 SAFEKCHPWTSCETKDLVVQQAGTNKTDVVC 186
S+ E+C P +C L + G++ D +C
Sbjct: 163 SSSEQCQPHRNCTALGLALNVPGSSSHDTLC 193
Score = 47.8 bits (112), Expect = 1e-05
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 17 AVHPEPPTACREKQ-YLINSQCC---SLCQPGQKLVSDCTEFTETECLPCGESEFLDTWN 72
A H ACR + + ++ C + C PG +++ T T+C PC F + +
Sbjct: 104 ACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSS 163
Query: 73 RETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCT-----SEACESCVLHRSCSP 127
C H+ C LGL + G+S DT+CT G+ + +E CE V+
Sbjct: 164 SSEQCQPHRNCTA-LGLALNVPGSSSHDTLCTSCTGFPLSTRVPGAEECERAVIDFVAFQ 222
Query: 128 GFGVKQI 134
+K++
Sbjct: 223 DISIKRL 229
>gi|4507579 tumor necrosis factor receptor superfamily, member 4
precursor [Homo sapiens]
Length = 277
Score = 76.6 bits (187), Expect = 2e-14
Identities = 47/165 (28%), Positives = 66/165 (40%), Gaps = 25/165 (15%)
Query: 26 CREKQYLINSQCCSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDP 85
C Y N +CC C+PG +VS C+ T C PCG + D + + C +C+
Sbjct: 31 CVGDTYPSNDRCCHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSSKP-CKPCTWCNL 89
Query: 86 NLGLRVQQKGTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEP 145
G +Q T+ DT+C C G S PG C P
Sbjct: 90 RSGSERKQLCTATQDTVCRCRAGTQPLD----------SYKPGVD------------CAP 127
Query: 146 CPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTNKTDVVCGPQD 190
CP G FS + + C PWT+C Q +N +D +C +D
Sbjct: 128 CPPGHFSPGDN--QACKPWTNCTLAGKHTLQPASNSSDAICEDRD 170
>gi|7657039 tumor necrosis factor receptor superfamily, member 21
precursor [Homo sapiens]
Length = 655
Score = 76.3 bits (186), Expect = 3e-14
Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 38 CSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQK--G 95
C C G + CT + C C F N CH C + +K
Sbjct: 67 CDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHD---CSQPCPWPMIEKLPC 123
Query: 96 TSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVS 155
+ TD CTC G ++ +C H C G+GV++ T D C+ C G FS+V
Sbjct: 124 AALTDRECTCPPGMF---QSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVP 180
Query: 156 SAFEKCHPWTSCETKDLVVQQAGTNKTDVVCG 187
S+ KC +T C +++LVV + GT +TD VCG
Sbjct: 181 SSVMKCKAYTDCLSQNLVVIKPGTKETDNVCG 212
>gi|4505393 nerve growth factor receptor precursor [Homo sapiens]
Length = 427
Score = 69.7 bits (169), Expect = 3e-12
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 12/166 (7%)
Query: 25 ACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECLPCGES-EFLDTWNRETHCHQHKYC 83
AC Y + +CC C G+ + C +T C PC +S F D + C K C
Sbjct: 31 ACPTGLYTHSGECCKACNLGEGVAQPCGA-NQTVCEPCLDSVTFSDVVSATEPC---KPC 86
Query: 84 DPNLGLRVQQKGTSETD-TICTCEEGWHC--TSEACESCVLHRSCSPGFGVKQIATGVSD 140
+GL+ E D +C C G++ T+ CE+C R C G G+ +
Sbjct: 87 TECVGLQSMSAPCVEADDAVCRCAYGYYQDETTGRCEAC---RVCEAGSGLVFSCQDKQN 143
Query: 141 TICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTNKTDVVC 186
T+CE CP G +S+ ++ + C P T CE + +++ T D C
Sbjct: 144 TVCEECPDGTYSDEANHVDPCLPCTVCEDTERQLREC-TRWADAEC 188
>gi|4507587 tumor necrosis factor receptor superfamily, member 7
precursor [Homo sapiens]
Length = 260
Score = 69.3 bits (168), Expect = 3e-12
Identities = 67/260 (25%), Positives = 106/260 (40%), Gaps = 20/260 (7%)
Query: 8 CVLWGCLLTAVHPEPPTACREKQYLINSQ-CCSLCQPGQKLVSDCTEFTE-TECLPCGES 65
CVL G L+ P +C E+ Y + CC +C+PG LV DC + + +C PC
Sbjct: 10 CVL-GTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAAQCDPCIPG 68
Query: 66 -EFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCVLHRS 124
F + HC ++C N GL V + T + C C GW C + C C
Sbjct: 69 VSFSPDHHTRPHCESCRHC--NSGLLV-RNCTITANAECACRNGWQCRDKECTEC----D 121
Query: 125 CSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTN--KT 182
P + ++ +P + + S + A H T + + L + T+
Sbjct: 122 PLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLSTHWPPQ 181
Query: 183 DVVCGPQDRLRALVVIPIIFGILFAILLVLVFIKKVAKKPTNKAPHPKQ--EPQEINFPD 240
+C D +R LV+ +F L L +F+ + K +NK P + EP + P
Sbjct: 182 RSLCS-SDFIRILVIFSGMF--LVFTLAGALFLHQRRKYRSNKGESPVEPAEPCRYSCPR 238
Query: 241 DLPGSNTAAPVQETLHGCQP 260
+ GS P+QE +P
Sbjct: 239 EEEGS--TIPIQEDYRKPEP 256
>gi|23510423 tumor necrosis factor receptor superfamily, member 6
isoform 3 precursor [Homo sapiens]
Length = 220
Score = 62.8 bits (151), Expect = 3e-10
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 37 CCSLCQPGQKLVSDCT-EFTETECLPCGES-EFLDTWNRETHCHQHKYCDPNLGLRVQQK 94
C C PG++ DCT E +C+PC E E+ D + + C + + CD GL V+
Sbjct: 59 CHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEIN 118
Query: 95 GTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICE 144
T +T C C+ + C S CE C C G+ + T S+T C+
Sbjct: 119 CTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCE--HGIIKECTLTSNTKCK 166
>gi|23510421 tumor necrosis factor receptor superfamily, member 6
isoform 2 precursor [Homo sapiens]
Length = 314
Score = 62.8 bits (151), Expect = 3e-10
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 37 CCSLCQPGQKLVSDCT-EFTETECLPCGES-EFLDTWNRETHCHQHKYCDPNLGLRVQQK 94
C C PG++ DCT E +C+PC E E+ D + + C + + CD GL V+
Sbjct: 59 CHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEIN 118
Query: 95 GTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICE 144
T +T C C+ + C S CE C C G+ + T S+T C+
Sbjct: 119 CTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCE--HGIIKECTLTSNTKCK 166
>gi|4507583 tumor necrosis factor receptor superfamily, member 6
isoform 1 precursor [Homo sapiens]
Length = 335
Score = 62.8 bits (151), Expect = 3e-10
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 37 CCSLCQPGQKLVSDCT-EFTETECLPCGES-EFLDTWNRETHCHQHKYCDPNLGLRVQQK 94
C C PG++ DCT E +C+PC E E+ D + + C + + CD GL V+
Sbjct: 59 CHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEIN 118
Query: 95 GTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICE 144
T +T C C+ + C S CE C C G+ + T S+T C+
Sbjct: 119 CTRTQNTKCRCKPNFFCNSTVCEHCDPCTKCE--HGIIKECTLTSNTKCK 166
>gi|5730095 tumor necrosis factor receptor superfamily, member 9
precursor [Homo sapiens]
Length = 255
Score = 61.2 bits (147), Expect = 9e-10
Identities = 42/151 (27%), Positives = 57/151 (37%), Gaps = 18/151 (11%)
Query: 38 CSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTS 97
CS C G + C C PC + F + T C + C R + TS
Sbjct: 28 CSNCPAG----TFCDNNRNQICSPCPPNSFSSAGGQRT-CDICRQCKGVFRTRKECSSTS 82
Query: 98 ETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSA 157
+ C C G+HC C C + C G + + C+ C G F++
Sbjct: 83 NAE--CDCTPGFHCLGAGCSMC--EQDCKQGQELTKKG-------CKDCCFGTFNDQKRG 131
Query: 158 FEKCHPWTSCETKDLVVQQAGTNKTDVVCGP 188
C PWT+C V GT + DVVCGP
Sbjct: 132 I--CRPWTNCSLDGKSVLVNGTKERDVVCGP 160
>gi|4507575 tumor necrosis factor receptor 1 precursor [Homo
sapiens]
Length = 455
Score = 54.3 bits (129), Expect = 1e-07
Identities = 54/199 (27%), Positives = 82/199 (41%), Gaps = 17/199 (8%)
Query: 24 TACREKQYLI---NSQCCSLCQPGQKLVSDCT-EFTETECLPCGESEFLDTWNRETHCHQ 79
+ C + +Y+ NS CC+ C G L +DC +T+C C F + N HC
Sbjct: 42 SVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHCLS 101
Query: 80 HKYCDPNLGLRVQQKGTSETDTICTCEEGW--HCTSEACESCVLHRSCSPGFGVKQIATG 137
C +G T + DT+C C + H SE C C G V
Sbjct: 102 CSKCRKEMGQVEISSCTVDRDTVCGCRKNQYRHYWSENLFQCFNCSLCLNG-TVHLSCQE 160
Query: 138 VSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTNKTDVVCGPQDR-LRALV 196
+T+C C GFF + +C ++C+ K L + + + V G +D L+
Sbjct: 161 KQNTVC-TCHAGFFLREN----ECVSCSNCK-KSLECTKLCLPQIENVKGTEDSGTTVLL 214
Query: 197 VIPIIFGILFAILLVLVFI 215
+ I FG+ LL L+FI
Sbjct: 215 PLVIFFGL---CLLSLLFI 230
>gi|4507569 tumor necrosis factor receptor superfamily, member 25
isoform 2 precursor [Homo sapiens]
Length = 417
Score = 49.7 bits (117), Expect = 3e-06
Identities = 46/184 (25%), Positives = 70/184 (38%), Gaps = 30/184 (16%)
Query: 37 CCSLCQPGQKLVSDCTE-FTETECLPCGESEFLDTWNRE-THCHQHKYCDPNLGLRVQQK 94
CC C G L + CTE + CL C + FL N + C + + CD +
Sbjct: 47 CCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALEN 106
Query: 95 GTSETDTICTCEEGW-------HCTSEA---CESCVLHRSCSPGFGVKQIATGVSDTICE 144
++ DT C C+ GW C S + C+ C+ C ++ DT C
Sbjct: 107 CSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCL---DCGALHRHTRLLCSRRDTDCG 163
Query: 145 PCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTNKTDVVCGPQDR-----LRALVVIP 199
C GF+ + SC T L + + VCG + L A +V+P
Sbjct: 164 TCLPGFYEHGDGC-------VSCPTSTL---GSCPERCAAVCGWRQMFWVQVLLAGLVVP 213
Query: 200 IIFG 203
++ G
Sbjct: 214 LLLG 217
>gi|23200023 tumor necrosis factor receptor superfamily, member 25
isoform 3 precursor [Homo sapiens]
Length = 380
Score = 47.8 bits (112), Expect = 1e-05
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 15/129 (11%)
Query: 37 CCSLCQPGQKLVSDCTE-FTETECLPCGESEFLDTWNRE-THCHQHKYCDPNLGLRVQQK 94
CC C G L + CTE + CL C + FL N + C + + CD +
Sbjct: 47 CCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALEN 106
Query: 95 GTSETDTICTCEEGW-------HCTSEA---CESCVLHRSCSPGFGVKQIATGVSDTICE 144
++ DT C C+ GW C S + C+ C+ C ++ DT C
Sbjct: 107 CSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCL---DCGALHRHTRLLCSRRDTDCG 163
Query: 145 PCPVGFFSN 153
C GF+ +
Sbjct: 164 TCLPGFYEH 172
>gi|23200021 tumor necrosis factor receptor superfamily, member 25
isoform 1 precursor [Homo sapiens]
Length = 426
Score = 47.8 bits (112), Expect = 1e-05
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 15/129 (11%)
Query: 37 CCSLCQPGQKLVSDCTE-FTETECLPCGESEFLDTWNRE-THCHQHKYCDPNLGLRVQQK 94
CC C G L + CTE + CL C + FL N + C + + CD +
Sbjct: 47 CCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALEN 106
Query: 95 GTSETDTICTCEEGW-------HCTSEA---CESCVLHRSCSPGFGVKQIATGVSDTICE 144
++ DT C C+ GW C S + C+ C+ C ++ DT C
Sbjct: 107 CSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCL---DCGALHRHTRLLCSRRDTDCG 163
Query: 145 PCPVGFFSN 153
C GF+ +
Sbjct: 164 TCLPGFYEH 172
>gi|89142745 tumor necrosis factor receptor superfamily, member 25
isoform 12 precursor [Homo sapiens]
Length = 181
Score = 47.8 bits (112), Expect = 1e-05
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 15/129 (11%)
Query: 37 CCSLCQPGQKLVSDCTE-FTETECLPCGESEFLDTWNRE-THCHQHKYCDPNLGLRVQQK 94
CC C G L + CTE + CL C + FL N + C + + CD +
Sbjct: 47 CCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALEN 106
Query: 95 GTSETDTICTCEEGW-------HCTSEA---CESCVLHRSCSPGFGVKQIATGVSDTICE 144
++ DT C C+ GW C S + C+ C+ C ++ DT C
Sbjct: 107 CSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCL---DCGALHRHTRLLCSRRDTDCG 163
Query: 145 PCPVGFFSN 153
C GF+ +
Sbjct: 164 TCLPGFYEH 172
>gi|4759246 tumor necrosis factor receptor superfamily, member 18
isoform 1 precursor [Homo sapiens]
Length = 241
Score = 46.2 bits (108), Expect = 3e-05
Identities = 36/130 (27%), Positives = 46/130 (35%), Gaps = 11/130 (8%)
Query: 62 CGESEFLDTWNRETHC---HQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACES 118
CG L + C H + C G ++ SE D +C E +HC C +
Sbjct: 34 CGPGRLLLGTGTDARCCRVHTTRCCRDYPG----EECCSEWDCMCVQPE-FHCGDPCCTT 88
Query: 119 CVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAG 178
C H C PG GV+ C C G FS C PWT C + G
Sbjct: 89 C-RHHPCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEGH--CKPWTDCTQFGFLTVFPG 145
Query: 179 TNKTDVVCGP 188
+ VC P
Sbjct: 146 NKTHNAVCVP 155
>gi|23238197 tumor necrosis factor receptor superfamily, member 18
isoform 3 precursor [Homo sapiens]
Length = 234
Score = 46.2 bits (108), Expect = 3e-05
Identities = 36/130 (27%), Positives = 46/130 (35%), Gaps = 11/130 (8%)
Query: 62 CGESEFLDTWNRETHC---HQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACES 118
CG L + C H + C G ++ SE D +C E +HC C +
Sbjct: 34 CGPGRLLLGTGTDARCCRVHTTRCCRDYPG----EECCSEWDCMCVQPE-FHCGDPCCTT 88
Query: 119 CVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAG 178
C H C PG GV+ C C G FS C PWT C + G
Sbjct: 89 C-RHHPCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEGH--CKPWTDCTQFGFLTVFPG 145
Query: 179 TNKTDVVCGP 188
+ VC P
Sbjct: 146 NKTHNAVCVP 155
>gi|68348711 tumor necrosis factor receptor superfamily, member 8
isoform 1 precursor [Homo sapiens]
Length = 595
Score = 45.8 bits (107), Expect = 4e-05
Identities = 51/234 (21%), Positives = 78/234 (33%), Gaps = 33/234 (14%)
Query: 36 QCCSLCQPGQKLVSDCTEFTETECLP-CGESEFLDTWNRETHCHQHKYCDPNLGLRVQQK 94
+CC C G C + T+C C +LD +R T C D L +
Sbjct: 43 RCCYRCPMGLFPTQQCPQ-RPTDCRKQCEPDYYLDEADRCTACVTCSRDD----LVEKTP 97
Query: 95 GTSETDTICTCEEGWHCTSEA---CESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFF 151
+ +C C G C++ A C C H C G VK T +T+CEP G
Sbjct: 98 CAWNSSRVCECRPGMFCSTSAVNSCARCFFHSVCPAGMIVKFPGTAQKNTVCEPASPG-V 156
Query: 152 SNVSSAFEKCHPWTSCETKDLVVQQAGTNKTDVVCGPQDRLRALVVIPIIFGILFAILLV 211
S ++ E C E + QA + +P+ G
Sbjct: 157 SPACASPENCK-----EPSSGTIPQAKPTPVSPATS------SASTMPVRGG-------- 197
Query: 212 LVFIKKVAKKPTNKAPHPKQEPQEINFPDDLPGSNTAAPVQETLHGCQPVTQED 265
++A++ +K P + P PG + P E C+ + D
Sbjct: 198 ----TRLAQEAASKLTRAPDSPSSVGRPSSDPGLSPTQPCPEGSGDCRKQCEPD 247
>gi|23238194 tumor necrosis factor receptor superfamily, member 18
isoform 2 precursor [Homo sapiens]
Length = 255
Score = 42.4 bits (98), Expect = 5e-04
Identities = 32/109 (29%), Positives = 40/109 (36%), Gaps = 11/109 (10%)
Query: 62 CGESEFLDTWNRETHC---HQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACES 118
CG L + C H + C G ++ SE D +C E +HC C +
Sbjct: 34 CGPGRLLLGTGTDARCCRVHTTRCCRDYPG----EECCSEWDCMCVQPE-FHCGDPCCTT 88
Query: 119 CVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSC 167
C H C PG GV+ C C G FS C PWT C
Sbjct: 89 C-RHHPCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEG--HCKPWTDC 134
>gi|38569482 hypothetical protein LOC57535 [Homo sapiens]
Length = 1013
Score = 42.4 bits (98), Expect = 5e-04
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 25/154 (16%)
Query: 38 CSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTS 97
C C+PG + F C C + + + ET CHQ CDP+ + +KG+S
Sbjct: 275 CFPCKPGTYADKQGSSF----CKLCPANSYSN--KGETSCHQ---CDPD---KYSEKGSS 322
Query: 98 ETDTICTC-EEGWHCTSEAC----ESCVLHRSCSPGF-------GVKQIATGVSDTICEP 145
+ C ++ + T AC E+ ++++ P VK A+GV T C P
Sbjct: 323 SCNVRPACTDKDYFYTHTACDANGETQLMYKWAKPKICSEDLEGAVKLPASGVK-THCPP 381
Query: 146 CPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGT 179
C GFF +S + C + D AGT
Sbjct: 382 CNPGFFKTNNSTCQPCPYGSYSNGSDCTRCPAGT 415
>gi|110611156 laminin, gamma 3 precursor [Homo sapiens]
Length = 1575
Score = 42.0 bits (97), Expect = 6e-04
Identities = 34/116 (29%), Positives = 40/116 (34%), Gaps = 45/116 (38%)
Query: 36 QCCSLCQPGQKLVSDCTEFTE----TECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRV 91
Q C C PG K E + C+PC C+QH CDPN G
Sbjct: 682 QFCESCAPGYK-----REMPQGGPYASCVPCT-------------CNQHGTCDPNTG--- 720
Query: 92 QQKGTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGVSDTICEPCP 147
IC C H +CE C+ PGF A D C+PCP
Sbjct: 721 ----------ICVCSH--HTEGPSCERCL------PGFYGNPFAGQADD--CQPCP 756
Score = 31.2 bits (69), Expect = 1.0
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 25/85 (29%)
Query: 102 ICTCEEGWHCTSEACESCV----------------------LHRSCSPGFGVKQIATGVS 139
IC+C G+ T + CESC H +C P G+ +
Sbjct: 672 ICSCPTGY--TGQFCESCAPGYKREMPQGGPYASCVPCTCNQHGTCDPNTGICVCSHHTE 729
Query: 140 DTICEPCPVGFFSN-VSSAFEKCHP 163
CE C GF+ N + + C P
Sbjct: 730 GPSCERCLPGFYGNPFAGQADDCQP 754
Score = 28.9 bits (63), Expect = 5.2
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 18/70 (25%)
Query: 116 CESCVLHR------SCSPGFGVKQIATGVSDTICEPCPVGFF------------SNVSSA 157
C SC H C P G GV+ C+ C +GFF S + +A
Sbjct: 914 CRSCKCHPLGSQEDQCHPKTGQCTCRPGVTGQACDRCQLGFFGFSIKGCRACRCSPLGAA 973
Query: 158 FEKCHPWTSC 167
+CH +C
Sbjct: 974 SAQCHENGTC 983
>gi|224494019 tumor necrosis factor receptor superfamily, member 10b
isoform 1 precursor [Homo sapiens]
Length = 440
Score = 40.8 bits (94), Expect = 0.001
Identities = 51/209 (24%), Positives = 79/209 (37%), Gaps = 49/209 (23%)
Query: 20 PEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECLPCGESEFLDT-WNRETHCH 78
P+ A ++K+ +S LC PG + D +C+ C + T WN C
Sbjct: 63 PQQRAAPQQKR---SSPSEGLCPPGHHISED-----GRDCISCKYGQDYSTHWNDLLFCL 114
Query: 79 QHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIATGV 138
+ CD G T+ +T+C CEEG ++ E C R C G
Sbjct: 115 RCTRCDS--GEVELSPCTTTRNTVCQCEEGTFREEDSPEMC---RKCRTG---------- 159
Query: 139 SDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTNKTDVVCGPQDRLRALVVI 198
CP G C PW+ E V +++GT + V ++ + +
Sbjct: 160 -------CPRGMVK-----VGDCTPWSDIE---CVHKESGTKHSGEVPAVEETVTSSPGT 204
Query: 199 P--------IIFGILFA--ILLVLVFIKK 217
P II G+ A +L+V VF+ K
Sbjct: 205 PASPCSLSGIIIGVTVAAVVLIVAVFVCK 233
>gi|23238204 tumor necrosis factor receptor superfamily, member 19
isoform 2 precursor [Homo sapiens]
Length = 417
Score = 40.8 bits (94), Expect = 0.001
Identities = 52/211 (24%), Positives = 79/211 (37%), Gaps = 54/211 (25%)
Query: 26 CREKQYLINS-QC--CSLCQPGQKLVSDCT--EFTETECLPCGESEFLDTWNRETHCHQH 80
CR++++ S C C+ C PG +L +C + +C+ C F + W +
Sbjct: 34 CRQQEFRDRSGNCVPCNQCGPGMELSKECGFGYGEDAQCVTCRLHRFKEDWGFQK----- 88
Query: 81 KYCDPNLGL----RVQQKGTSET-DTICTCEEGWHCTSEACESCVLHRSCSPGFGVKQIA 135
C P L R Q+ S T D IC C PGF K
Sbjct: 89 --CKPCLDCAVVNRFQKANCSATSDAICG-------------------DCLPGFYRKTKL 127
Query: 136 TGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTNKTDVVCGPQDRLRAL 195
G D C PC + +E C +K +V+ A T P+D A
Sbjct: 128 VGFQDMECVPC-----GDPPPPYE-----PHCASKVNLVKIAST-----ASSPRDTALAA 172
Query: 196 VVIPIIFGILFAILLVLVFIKK---VAKKPT 223
V+ + +L A+L++ V K + KKP+
Sbjct: 173 VICSALATVLLALLILCVIYCKRQFMEKKPS 203
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,854,626
Number of Sequences: 37866
Number of extensions: 635913
Number of successful extensions: 2009
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 1797
Number of HSP's gapped (non-prelim): 221
length of query: 277
length of database: 18,247,518
effective HSP length: 101
effective length of query: 176
effective length of database: 14,423,052
effective search space: 2538457152
effective search space used: 2538457152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.