Guide to the Human Genome
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Name: LAMA2 Sequence: fasta or formatted (3122aa) NCBI GI: 28559088
Description:

laminin alpha 2 subunit isoform a precursor

Referenced in:

Netrins and Laminins

Other entries for this name:
alt prot [3118aa] laminin alpha 2 subunit isoform b precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6        205           3
 C cysteine            5.2        163           2
 D aspartate           5.9        183           2
 E glutamate           6.5        204           5
 F phenylalanine       3.3        104           2
 G glycine             8.4        263           3
 H histidine           2.2         70           2
 I isoleucine          5.3        165           2
 K lysine              6.0        186           3
 L leucine             7.9        247           6
 M methionine          1.5         46           2
 N asparagine          5.2        163           2
 P proline             5.6        174           2
 Q glutamine           3.8        120           3
 R arginine            5.1        160           2
 S serine              6.2        194           3
 T threonine           6.2        193           5
 V valine              5.1        159           2
 W tryptophan          0.9         27           2
 Y tyrosine            3.1         96           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   laminin alpha 2 subunit isoform a precursor 
LAMA2                 0.998   laminin alpha 2 subunit isoform b precursor 
LAMA1                 0.436   laminin, alpha 1 precursor 
LAMA3                 0.095   laminin alpha 3 subunit isoform 1 
LAMA3                 0.092   laminin alpha 3 subunit isoform 3 
LAMC1                 0.092   laminin, gamma 1 precursor 
LAMC3                 0.087   laminin, gamma 3 precursor 
LAMA5                 0.068   laminin alpha 5 
LAMA3                 0.062   laminin alpha 3 subunit isoform 2 
LAMA4                 0.061   laminin, alpha 4 isoform 2 precursor 
LAMA4                 0.061   laminin, alpha 4 isoform 2 precursor 
LAMA4                 0.060   laminin, alpha 4 isoform 1 precursor 
LAMA3                 0.059   laminin alpha 3 subunit isoform 4 
LAMB2                 0.058   laminin, beta 2 precursor 
HSPG2                 0.051   heparan sulfate proteoglycan 2 
LAMC2                 0.044   laminin, gamma 2 isoform b precursor 
LAMC2                 0.044   laminin, gamma 2 isoform a precursor 
LAMB1                 0.043   laminin, beta 1 precursor 
USH2A                 0.038   usherin isoform B 
USH2A                 0.038   usherin isoform A 
LAMB4                 0.036   laminin, beta 4 
NTN1                  0.034   netrin 1 
NTN4                  0.028   netrin 4 
LAMB3                 0.027   laminin, beta 3 precursor 
LAMB3                 0.027   laminin, beta 3 precursor 
LAMB3                 0.027   laminin, beta 3 precursor 
MEGF6                 0.026   EGF-like-domain, multiple 3 
MEGF11                0.024   multiple EGF-like-domains 11 
MEGF10                0.024   multiple EGF-like-domains 10 
NTNG1                 0.022   netrin G1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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