Guide to the Human Genome
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Name: LAMB4 Sequence: fasta or formatted (1761aa) NCBI GI: 143770880
Description:

laminin, beta 4

Referenced in:

Netrins and Laminins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0        105           2
 C cysteine            7.3        129           2
 D aspartate           6.0        105           2
 E glutamate           5.7        101           3
 F phenylalanine       2.7         48           2
 G glycine             7.8        137           3
 H histidine           3.1         54           2
 I isoleucine          4.3         76           2
 K lysine              5.1         90           2
 L leucine             9.0        159           3
 M methionine          1.0         18           1
 N asparagine          4.9         87           3
 P proline             5.8        102           2
 Q glutamine           6.0        105           2
 R arginine            4.7         83           2
 S serine              7.3        129           3
 T threonine           5.1         89           2
 V valine              4.8         84           2
 W tryptophan          0.6         11           2
 Y tyrosine            2.8         49           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   laminin, beta 4 
LAMB1                 0.386   laminin, beta 1 precursor 
LAMB2                 0.364   laminin, beta 2 precursor 
LAMB3                 0.114   laminin, beta 3 precursor 
LAMB3                 0.114   laminin, beta 3 precursor 
LAMB3                 0.114   laminin, beta 3 precursor 
NTN4                  0.088   netrin 4 
LAMC1                 0.077   laminin, gamma 1 precursor 
LAMA1                 0.071   laminin, alpha 1 precursor 
LAMA5                 0.070   laminin alpha 5 
LAMC3                 0.068   laminin, gamma 3 precursor 
LAMA3                 0.066   laminin alpha 3 subunit isoform 1 
LAMA3                 0.066   laminin alpha 3 subunit isoform 3 
LAMA2                 0.064   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.064   laminin alpha 2 subunit isoform a precursor 
USH2A                 0.061   usherin isoform B 
USH2A                 0.061   usherin isoform A 
NTN1                  0.060   netrin 1 
NTN3                  0.050   netrin 3 
NTNG1                 0.042   netrin G1 isoform 1 
MEGF9                 0.040   multiple EGF-like-domains 9 
MEGF11                0.039   multiple EGF-like-domains 11 
NTNG2                 0.038   netrin G2 
LAMA4                 0.038   laminin, alpha 4 isoform 1 precursor 
LAMA4                 0.038   laminin, alpha 4 isoform 2 precursor 
LAMA4                 0.038   laminin, alpha 4 isoform 2 precursor 
PEAR1                 0.038   platelet endothelial aggregation receptor 1 
MEGF10                0.037   multiple EGF-like-domains 10 
NTN5                  0.037   netrin 5 
LAMC2                 0.036   laminin, gamma 2 isoform b precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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