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Search of human proteins with 31543148
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31543148 hypothetical protein LOC79173 [Homo sapiens]
(637 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31543148 hypothetical protein LOC79173 [Homo sapiens] 1310 0.0
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 66 9e-11
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 62 2e-09
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 62 2e-09
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 59 1e-08
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 58 2e-08
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 57 5e-08
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 57 7e-08
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 56 9e-08
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 54 4e-07
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 54 4e-07
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 54 4e-07
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 54 6e-07
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 54 6e-07
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 54 6e-07
gi|91208420 bassoon protein [Homo sapiens] 53 1e-06
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 53 1e-06
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 53 1e-06
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 52 2e-06
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 51 3e-06
gi|150418009 transforming, acidic coiled-coil containing protein... 51 3e-06
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 51 4e-06
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 51 4e-06
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 51 4e-06
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens] 51 4e-06
gi|50511941 EMI domain containing 1 [Homo sapiens] 50 5e-06
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 50 6e-06
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 50 6e-06
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 50 6e-06
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 50 6e-06
>gi|31543148 hypothetical protein LOC79173 [Homo sapiens]
Length = 637
Score = 1310 bits (3391), Expect = 0.0
Identities = 637/637 (100%), Positives = 637/637 (100%)
Query: 1 MTKRKKLRTSGEGLCPPKPLKNPRLGDFYGDPQSSMLGCLHHPEEPEGKLGPVPSTQQHG 60
MTKRKKLRTSGEGLCPPKPLKNPRLGDFYGDPQSSMLGCLHHPEEPEGKLGPVPSTQQHG
Sbjct: 1 MTKRKKLRTSGEGLCPPKPLKNPRLGDFYGDPQSSMLGCLHHPEEPEGKLGPVPSTQQHG 60
Query: 61 EEPGKAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSFGRFVPQFAKSRKTVTRKEEMK 120
EEPGKAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSFGRFVPQFAKSRKTVTRKEEMK
Sbjct: 61 EEPGKAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSFGRFVPQFAKSRKTVTRKEEMK 120
Query: 121 DEDRGSGAFSLETIAESSAQSPGCQLLVETLGVPLQEATELGDPTQADSARPEQSSQSPV 180
DEDRGSGAFSLETIAESSAQSPGCQLLVETLGVPLQEATELGDPTQADSARPEQSSQSPV
Sbjct: 121 DEDRGSGAFSLETIAESSAQSPGCQLLVETLGVPLQEATELGDPTQADSARPEQSSQSPV 180
Query: 181 QAVPGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDRVPGDGGQKEHLPSI 240
QAVPGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDRVPGDGGQKEHLPSI
Sbjct: 181 QAVPGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDRVPGDGGQKEHLPSI 240
Query: 241 DSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWCLE 300
DSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWCLE
Sbjct: 241 DSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWCLE 300
Query: 301 PGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPD 360
PGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPD
Sbjct: 301 PGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPD 360
Query: 361 GQASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLA 420
GQASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLA
Sbjct: 361 GQASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLA 420
Query: 421 LAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELGGQNLERDLEGFRVSPQAS 480
LAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELGGQNLERDLEGFRVSPQAS
Sbjct: 421 LAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELGGQNLERDLEGFRVSPQAS 480
Query: 481 VVLEHREIADDPLQEPGAQQGIPDTTSELAGQRDHLPHSADQGTWADSLAVELDFLLDSQ 540
VVLEHREIADDPLQEPGAQQGIPDTTSELAGQRDHLPHSADQGTWADSLAVELDFLLDSQ
Sbjct: 481 VVLEHREIADDPLQEPGAQQGIPDTTSELAGQRDHLPHSADQGTWADSLAVELDFLLDSQ 540
Query: 541 IQDALDASDFEAPPEQLFPSGNKPGPCWPGPSSHANGDPVAVAKAQPSRLIMGTHRDLEA 600
IQDALDASDFEAPPEQLFPSGNKPGPCWPGPSSHANGDPVAVAKAQPSRLIMGTHRDLEA
Sbjct: 541 IQDALDASDFEAPPEQLFPSGNKPGPCWPGPSSHANGDPVAVAKAQPSRLIMGTHRDLEA 600
Query: 601 FKRLNYRKTKLGGKAPLPYPSKGPGNIPRGDPPWREL 637
FKRLNYRKTKLGGKAPLPYPSKGPGNIPRGDPPWREL
Sbjct: 601 FKRLNYRKTKLGGKAPLPYPSKGPGNIPRGDPPWREL 637
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 66.2 bits (160), Expect = 9e-11
Identities = 136/495 (27%), Positives = 165/495 (33%), Gaps = 67/495 (13%)
Query: 16 PPKPLKNPRLGD------FYGDPQSSMLGCL----HHPEEPEGKLGPVPSTQQHG----- 60
PP P P LG YG + S G P P G GP + G
Sbjct: 146 PPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPP 205
Query: 61 EEPGKAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSFGRFVPQFAKSRKTVTRKEEMK 120
EPG+ +S P G P + + A P G PQ A+ MK
Sbjct: 206 GEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMK 265
Query: 121 DEDRGSGAFSLETIA-----ESSAQSPGCQLLVETLGVPLQEATELGDPTQADSARPEQS 175
SG + A + SPG +G P E G P A +
Sbjct: 266 GHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMG-PRGLPGERGRPGAPGPAGARGN 324
Query: 176 SQSPVQAVPGSGDSQPDDPPDRGTGLSASQRAS-QDHLSEQGADDSKPETDRVPGDGGQK 234
+ A P G + P PP + A A Q +G + E PG G
Sbjct: 325 DGATGAAGP-PGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGP-PGPAGAA 382
Query: 235 EHL--PSIDSE-GEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSGPAPG 291
P D + G K GAP GA GA P GPQ G G P P APG
Sbjct: 383 GPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQ--GPGGPPGPKGNSGEPGAPG 440
Query: 292 -LGPASWCLEPGSV-AQGSPDPQQTPSRMGREGEGTHSSL--------GCSSLGMVVIAD 341
G EPG V QG P P + G GE + L G S G AD
Sbjct: 441 SKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPG-AD 499
Query: 342 LSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGH--RRALPGCTSLTGE------ 393
P GP G+ + PA P+ + G LPG LTG
Sbjct: 500 GVAGP----------KGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGP 549
Query: 394 --TTGESGEAGQDGK--PPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQK 449
TG G AGQDG+ PPG A + PG + AG+ G A P
Sbjct: 550 DGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGA---AGEPGKAGERGVP--GPP 604
Query: 450 QEPGPAQEEAELGGQ 464
GPA ++ E G Q
Sbjct: 605 GAVGPAGKDGEAGAQ 619
Score = 46.6 bits (109), Expect = 7e-05
Identities = 69/248 (27%), Positives = 88/248 (35%), Gaps = 30/248 (12%)
Query: 228 PGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSG 287
PG G ++G+ +G P + GA+ AG P GP G P AP +
Sbjct: 805 PGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGP--AGPPGPIGNVGAPGAK 862
Query: 288 PAPG-LGPASWCLEPGSVAQ-------GSPDPQQTPSRMGRE-GEGTHSSLGCSSLGMVV 338
A G GP PG+ + G+ P P G+E G+G G G
Sbjct: 863 GARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETG--PAGRPG 920
Query: 339 IADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGG--------HRRALPGCTSL 390
P E+ G DG A A P+ A G R PG
Sbjct: 921 EVGPPGPPGPAGEKG--SPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGP 978
Query: 391 TGE--TTGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGP-CVN 447
+GE G SG +G+ G PPG +GP LA PG G G D P
Sbjct: 979 SGEPGKQGPSGASGERG-PPGP--MGP-PGLAGPPGESGREGAPGAEGSPGRDGSPGAKG 1034
Query: 448 QKQEPGPA 455
+ E GPA
Sbjct: 1035 DRGETGPA 1042
Score = 45.4 bits (106), Expect = 2e-04
Identities = 82/317 (25%), Positives = 108/317 (34%), Gaps = 66/317 (20%)
Query: 157 EATELGDPTQADSA-RPEQSSQSPVQAVPGS-------GDSQPDDPPDRGTGLSASQRAS 208
+A +G P +A P ++ + V PG+ G++ PP G A +R
Sbjct: 576 QAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPP--GPAGPAGERGE 633
Query: 209 QDHLSEQGADD-----SKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGA 263
Q G P PG+ G L + G + +RG P E G Q G
Sbjct: 634 QGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPG- 692
Query: 264 GLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREG- 322
P GP+ +G P + +G APG PGS QG+P Q P G G
Sbjct: 693 --PAGPR-GANGAPGNDGAKGDAG-APG--------APGS--QGAPGLQGMPGERGAAGL 738
Query: 323 ---EGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKA-ADG 378
+G G AD S G DG P P A A G
Sbjct: 739 PGPKGDRGDAGPKG------ADGS-------------PGKDGVRGLTGPIGPPGPAGAPG 779
Query: 379 GHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHA 438
+ P + G G+ G+ G P GP + GE GD+G A
Sbjct: 780 DKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGE----PGDAG-A 834
Query: 439 SPDTGPCVNQKQEPGPA 455
D GP PGPA
Sbjct: 835 KGDAGP-------PGPA 844
Score = 38.1 bits (87), Expect = 0.025
Identities = 54/199 (27%), Positives = 61/199 (30%), Gaps = 65/199 (32%)
Query: 250 GAPQEGGAQRTAGA----GLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWCLEPGSVA 305
G P E G + GA G G P +GD PA P APG A
Sbjct: 1007 GPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPP---GAPG-------------A 1050
Query: 306 QGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASA 365
G+P P + G GE T P AGP G A
Sbjct: 1051 PGAPGPVGPAGKSGDRGE--------------------TGPA-------GPAGPVGPVGA 1083
Query: 366 ISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLALAPGS 425
PA P+ D G TGE G+ G G L GP PGS
Sbjct: 1084 RGPAGPQGPRGDKGE--------------TGEQGDRGIKGHRGFSGLQGPPG----PPGS 1125
Query: 426 GESMMGAGDSGHASPDTGP 444
+G SG A P P
Sbjct: 1126 PGEQGPSGASGPAGPRGPP 1144
Score = 36.6 bits (83), Expect = 0.073
Identities = 68/259 (26%), Positives = 84/259 (32%), Gaps = 21/259 (8%)
Query: 43 PEEPEGKLGPVPSTQQHGEE--PG-KAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSF 99
P+ G+ G V Q GE PG S P ++ S R P P P+ P
Sbjct: 951 PQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGP---PGPMGPP---- 1003
Query: 100 GRFVPQFAKSRKTVTRKEEMKDEDRGSGAFSLETIAESSAQSPGCQLLVETLGVPLQEAT 159
G P R+ E D GA + A PG G P+ A
Sbjct: 1004 GLAGPPGESGREGAPGAEGSPGRDGSPGAKG-DRGETGPAGPPGAPGAPGAPG-PVGPAG 1061
Query: 160 ELGDPTQADSARPEQSSQSPVQAVPGSGDSQPDDPP-DRGTGLSASQRASQDHLSEQGAD 218
+ GD + A P PV V G + P P D+G R + H G
Sbjct: 1062 KSGDRGETGPAGPA----GPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQ 1117
Query: 219 DSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQ-EEGDGVP 277
P PG+ G G GAP + G G P GP+ GD P
Sbjct: 1118 -GPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGP 1176
Query: 278 CTPASAPTSGPAPGLGPAS 296
P P GP GP S
Sbjct: 1177 VGPPGPP--GPPGPPGPPS 1193
Score = 34.3 bits (77), Expect = 0.36
Identities = 42/158 (26%), Positives = 49/158 (31%), Gaps = 10/158 (6%)
Query: 164 PTQADSARPEQSSQSPVQAVPGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPE 223
P A + PV SGD P G ++ QG K E
Sbjct: 1041 PAGPPGAPGAPGAPGPVGPAGKSGDRGETGPA--GPAGPVGPVGARGPAGPQGPRGDKGE 1098
Query: 224 TDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEG-----DGVPC 278
T GD G K H +G G+P E G +G P GP DG+
Sbjct: 1099 TGE-QGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNG 1157
Query: 279 TPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPS 316
P GP G A PG G P P PS
Sbjct: 1158 LPGPIGPPGPRGRTGDAGPVGPPG--PPGPPGPPGPPS 1193
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 62.0 bits (149), Expect = 2e-09
Identities = 83/296 (28%), Positives = 107/296 (36%), Gaps = 47/296 (15%)
Query: 184 PGS-GDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPE--TDRVPGDGGQKEHLPSI 240
PG G++ P P G + Q E+GA K E V G G
Sbjct: 797 PGERGETGPPGPA--GFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPP 854
Query: 241 DSEGEKPDRGAPQEGGAQRTAGA-GLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWCL 299
+G K +RG+P GA GA GLPG P G+ P P+ +P P GPA
Sbjct: 855 GPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPP--GPAGNTG 912
Query: 300 EPGSVAQGSPDPQQTPSRMGREGE-GTHSSLGCSSLGMVVIADLSTDPTELEERALEVAG 358
PGS G P+ + G +G G G G + IA ++ A +AG
Sbjct: 913 APGS--PGVSGPKGDAGQPGEKGSPGAQGPPGAP--GPLGIAGIT--------GARGLAG 960
Query: 359 PDGQASAISPASPRRKAADGGHRRALPGCTSLTGE-----------TTGESGEAGQDGKP 407
P G P+ + G PG L+GE G +GE G+DG P
Sbjct: 961 PPGMPGPRGSPGPQGVKGESGK----PGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNP 1016
Query: 408 PGDVLVGPTASLALAPGSGESMMGAGDSG-HASPDTGPCVNQKQEPGPAQEEAELG 462
D L PG S G GD G + SP PGP + G
Sbjct: 1017 GSDGL----------PGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSG 1062
Score = 55.5 bits (132), Expect = 2e-07
Identities = 82/291 (28%), Positives = 98/291 (33%), Gaps = 56/291 (19%)
Query: 181 QAVPG-SGDSQPDDPPD-RGTGLSASQRASQDHLSEQGADDS--KPETDRVPGDGGQKEH 236
Q PG +G++ P PP G G QG + P + PG+ G K
Sbjct: 605 QGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGD 664
Query: 237 LPSIDSEGEKPDRGAPQEGGAQRTAGA-GLPGG---PQEEGDGVPCTPASAPTSGPAPGL 292
+ + G K D GAP E G AGA GL GG P EG P P + PGL
Sbjct: 665 AGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGL 724
Query: 293 GPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEER 352
E G + GSP P+ G G G G
Sbjct: 725 QGMPG--ERGGL--GSPGPKGDKGEPG--GPGADGVPGKD-------------------- 758
Query: 353 ALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKPPGDVL 412
GP G I P P + D G A PG + G G GE G+ G PPG
Sbjct: 759 -----GPRGPTGPIGPPGPAGQPGDKGEGGA-PGLPGIAG-PRGSPGERGETG-PPG--- 807
Query: 413 VGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELGG 463
A APG G G+ G +K E GP GG
Sbjct: 808 ---PAGFPGAPGQNGEPGGKGERG--------APGEKGEGGPPGVAGPPGG 847
Score = 55.1 bits (131), Expect = 2e-07
Identities = 85/287 (29%), Positives = 101/287 (35%), Gaps = 71/287 (24%)
Query: 222 PETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGA----------GLPGGPQE 271
P T PG G K + S G G E G Q AGA G PGG E
Sbjct: 338 PGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGE 397
Query: 272 EGD-GVPCTPASAPTSGP--------APGL-GPASWCLEPG-SVAQGSPDPQ-------- 312
G G+P P GP APGL G A EPG + A+G P P+
Sbjct: 398 MGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAG---EPGKNGAKGEPGPRGERGEAGI 454
Query: 313 -QTPSRMGREG-EGTHSSLGCSSL----------GMVVIADLSTDPTELEERALEVAGPD 360
P G +G +G+ G + L G A + P E GP
Sbjct: 455 PGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGE--------KGPA 506
Query: 361 GQASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLA 420
G+ A PA PR A + G R +PG + G G G G DGKP GP
Sbjct: 507 GERGAPGPAGPRGAAGEPG-RDGVPGGPGMRG-MPGSPGGPGSDGKP------GP----- 553
Query: 421 LAPGSGESMMGAGDSGHASPDTGPCV----NQKQEPGPAQEEAELGG 463
PGS G G + P P V K G + E GG
Sbjct: 554 --PGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGG 598
Score = 53.9 bits (128), Expect = 4e-07
Identities = 63/226 (27%), Positives = 84/226 (37%), Gaps = 36/226 (15%)
Query: 219 DSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQ----EEGD 274
D P +D +PG G S +G++ + G+P GA G P GP + G+
Sbjct: 1013 DGNPGSDGLPGRDG------SPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGE 1066
Query: 275 GVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGE-GTHSSLGCSS 333
P PA AP GPA ++G+P PQ G GE G G
Sbjct: 1067 SGPAGPAGAP--------GPAG--------SRGAPGPQGPRGDKGETGERGAAGIKGHRG 1110
Query: 334 LGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGHRRAL--PGCTSLT 391
A S P ++ A+ GP G + P+ P K GH + PG
Sbjct: 1111 FPGNPGAPGSPGPAG-QQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNR 1169
Query: 392 GE--TTGESGEAGQDGKPPGDVLVGP----TASLALAPGSGESMMG 431
GE + G G GQ G P GP + A+A GE G
Sbjct: 1170 GERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAGIGGEKAGG 1215
Score = 53.5 bits (127), Expect = 6e-07
Identities = 86/310 (27%), Positives = 98/310 (31%), Gaps = 60/310 (19%)
Query: 169 SARPEQSSQSPVQAVPGS-GDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDR- 226
S P Q PG G + P PP + S A +D E G E
Sbjct: 188 SGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKD--GESGRPGRPGERGLP 245
Query: 227 ----------VPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGV 276
+PG G K H GEK + GAP G GLPG E G
Sbjct: 246 GPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGEN-----GLPG---ENGAPG 297
Query: 277 PCTPASAPTSGPAPGLGPASWCL--EPGSVAQGSPDPQQTPSRMGREGE-GTHSSLG-CS 332
P P AP PGL A+ + + G P P P G G G +G
Sbjct: 298 PMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAG 357
Query: 333 SLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTG 392
S G +P GP G A A P P PG G
Sbjct: 358 SPGSNGAPGQRGEP-----------GPQGHAGAQGPPGP-------------PGINGSPG 393
Query: 393 ETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEP 452
GE G AG G P GP A A G+ GAG+ G K EP
Sbjct: 394 -GKGEMGPAGIPGAPGLMGARGPPGP-AGANGAPGLRGGAGEPGKN--------GAKGEP 443
Query: 453 GPAQEEAELG 462
GP E E G
Sbjct: 444 GPRGERGEAG 453
Score = 41.6 bits (96), Expect = 0.002
Identities = 75/302 (24%), Positives = 98/302 (32%), Gaps = 85/302 (28%)
Query: 152 GVPLQEATELGDPTQADSARPEQSSQSPVQAVPG-SGDSQPDDPPDRGTGLSASQRASQD 210
GVP + + D + + + + PG G + P+ P G A +R +
Sbjct: 456 GVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIP--GEKGPAGERGAPG 513
Query: 211 HLSEQGADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQ 270
+GA +P D VPG G RG P G PGGP
Sbjct: 514 PAGPRGAA-GEPGRDGVPGGPGM---------------RGMP-----------GSPGGP- 545
Query: 271 EEGDGVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGE-GTHSSL 329
DG P P S SG GP+ +PG G P P+ G+ GE G
Sbjct: 546 -GSDGKPGPPGSQGESGRPGPPGPSGPRGQPG--VMGFPGPKGNDGAPGKNGERGGPGGP 602
Query: 330 GCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGHR-------- 381
G GP G+ P P GG +
Sbjct: 603 G-------------------------PQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGP 637
Query: 382 ---RALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHA 438
+ LPG TG GE+G+ G+ G P GD A APG+ AG G
Sbjct: 638 QGLQGLPG----TGGPPGENGKPGEPG-PKGD---------AGAPGAPGGKGDAGAPGER 683
Query: 439 SP 440
P
Sbjct: 684 GP 685
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 61.6 bits (148), Expect = 2e-09
Identities = 110/462 (23%), Positives = 152/462 (32%), Gaps = 89/462 (19%)
Query: 62 EPGKAVSSSPDEETGSPCRLL---------RQPEKEPAPLPPSQNSFGRFVPQFAKSRKT 112
+PG+ P E G+P +++ R+ + P+ P + G P+
Sbjct: 1336 DPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPG 1395
Query: 113 VTRKEEMKDE-DRGSGAFSLETIAESSAQSPGCQLLVETLGVPLQEATELGDPTQADSAR 171
K + D +RG IA PG G P + +G P +
Sbjct: 1396 TAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLP------GSPGPQGP-VGPPGKKGEKG 1448
Query: 172 PEQSSQSPVQAVPGS-GDSQPDDPP-------DRGTGLSASQRASQDHLSEQGADDSK-- 221
+ + PGS G+ P PP DRG + + G S+
Sbjct: 1449 DSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGL 1508
Query: 222 PETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPA 281
P PG G + +GEK + G P G G + G E+GD P P
Sbjct: 1509 PGVAGRPGAKGPEGPPGPTGRQGEKGEPGRP---GDPAVVGPAVAGPKGEKGDVGPAGPR 1565
Query: 282 SAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIAD 341
A +G GP PG V G P P+ P G +G+ A
Sbjct: 1566 GA--TGVQGERGP------PGLVLPGDPGPKGDPGDRG-------------PIGLTGRAG 1604
Query: 342 LSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGHR--RALPGCTSLTGET----- 394
D E+ G G+ P PR + + G + PG L G+
Sbjct: 1605 PPGDSGPPGEK-----GDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGL 1659
Query: 395 ------TGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASP-----DTG 443
G GE G G P D G +PGS G+ G P DTG
Sbjct: 1660 RGAPGVRGPVGEKGDQGDPGEDGRNG-------SPGSSGPKGDRGEPGPPGPPGRLVDTG 1712
Query: 444 PCVNQKQEPGPAQEEAELG--------GQNLERDLEGFRVSP 477
P +K EPG +E G G ER +EGFR P
Sbjct: 1713 PGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPP 1754
Score = 55.1 bits (131), Expect = 2e-07
Identities = 70/241 (29%), Positives = 88/241 (36%), Gaps = 29/241 (12%)
Query: 187 GDSQPD----DPPDRGTGLSASQRASQDHLSEQGADDSKPETDRVPGDGGQK--EHLPSI 240
GDS P DP G R + E+G D+ P +PG G++ P +
Sbjct: 1607 GDSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKG-DEGPPGDPGLPGKAGERGLRGAPGV 1665
Query: 241 DSE-GEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWCL 299
GEK D+G P E G + G+ P G + E G P P +GP A
Sbjct: 1666 RGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGE-PGPPGPPGRLVDTGPG-----AREKG 1719
Query: 300 EPGSVAQGSP-DPQQTPSRMGREGE-------GTHSSLGCSSLGMVVIADLSTDPTELEE 351
EPG Q P P+ P G GE G G + P L+
Sbjct: 1720 EPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDG 1779
Query: 352 RALEVAGPDGQASAISPASPRRKAADGGH--RRALPGCTSLTGETTGESGEAGQDGKPPG 409
R +G DG+ A P+ P A G R LPG G G SG G GKP
Sbjct: 1780 R----SGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQG-LPGPSGPPGLPGKPGE 1834
Query: 410 D 410
D
Sbjct: 1835 D 1835
Score = 50.1 bits (118), Expect = 6e-06
Identities = 71/260 (27%), Positives = 88/260 (33%), Gaps = 49/260 (18%)
Query: 228 PGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSG 287
PG G K S +G K DRG P G + G P G DG P P +G
Sbjct: 2110 PGLKGAKGEPGSNGDQGPKGDRGVP---GIKGDRGEPGPRGQ----DGNPGLPGERGMAG 2162
Query: 288 P--APGL-GPASWCLEPGSV-AQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLS 343
P PGL GP PG V G P P P G G S L
Sbjct: 2163 PEGKPGLQGPRG---PPGPVGGHGDPGPPGAPGLAGPAGPQGPSG-------------LK 2206
Query: 344 TDPTELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGE--------TT 395
+P E + GP G P P G LPG TG+ +
Sbjct: 2207 GEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQG-SPGLPGQVGETGKPGAPGRDGAS 2265
Query: 396 GESGEAGQDGKPPGDVL---VGPTASLALAPGSGESMMG----AGDSGHASPDTGPCVNQ 448
G+ G+ G G P L VGP G++++G G+ G G V +
Sbjct: 2266 GKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGE 2325
Query: 449 ------KQEPGPAQEEAELG 462
+ PGP E+ E G
Sbjct: 2326 PGAKGDRGLPGPRGEKGEAG 2345
Score = 46.6 bits (109), Expect = 7e-05
Identities = 116/459 (25%), Positives = 145/459 (31%), Gaps = 103/459 (22%)
Query: 46 PEGKLGPVPSTQQHGEE--PGKAVSSSPDE---------ETGSPCRLLRQPEKE---PAP 91
P G GPV G PG A + P ETG P R L P P P
Sbjct: 2172 PRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGP 2231
Query: 92 LPPS-----QNSFGR--FVPQFAKSRKTVTRKEEMKDEDRGSGAFSLETIAESSAQSPGC 144
PS Q S G V + K KD DRGS PG
Sbjct: 2232 PGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGV------------PGS 2279
Query: 145 QLLVETLGVPLQEATELGDPTQADSARPEQSSQSPVQAVPG--SGD--SQPDDPPDRGTG 200
L +G P E G P QA P + + PG +GD +P DRG
Sbjct: 2280 PGLPGPVG-PKGEPGPTGAPGQAVVGLPGAKGE---KGAPGGLAGDLVGEPGAKGDRGLP 2335
Query: 201 LSASQRASQDHLSEQGADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRT 260
++ E G PG+ GQK GAP G +
Sbjct: 2336 GPRGEKGEAGRAGEPGD----------PGEDGQK---------------GAPGPKGFKGD 2370
Query: 261 AGAGLPGGPQEEGD-------GVPCTPASAPTSGPAPGLGPASWCLEPGSVAQ----GSP 309
G G+PG P G G+P P + G GP +PG + G P
Sbjct: 2371 PGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPP 2430
Query: 310 DPQQTPSRMGREG-EGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISP 368
+ P +G G G+ G S L + + + + GP G+
Sbjct: 2431 GREGIPGPLGPPGPPGSVGPPGASGL-----------KGDKGDPGVGLPGPRGER----- 2474
Query: 369 ASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGES 428
P + DG R G LTG G GE G+ G L G A+ G
Sbjct: 2475 GEPGIRGEDG--RPGQEGPRGLTG-PPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGP 2531
Query: 429 MMGAGDSGHASP-----DTGPCVNQKQEPGPAQEEAELG 462
GD G P D GP +PG + E G
Sbjct: 2532 RGAKGDMGERGPRGLDGDKGP-RGDNGDPGDKGSKGEPG 2569
Score = 43.1 bits (100), Expect = 8e-04
Identities = 81/346 (23%), Positives = 111/346 (32%), Gaps = 49/346 (14%)
Query: 184 PGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGA-----DDSKPETDRVPGDGGQKEHLP 238
PG S+ +P D+G+ R + GA D P D VPG G+K +
Sbjct: 2559 PGDKGSK-GEPGDKGSAGLPGLRGLLGPQGQPGAAGIPGDPGSPGKDGVPGIRGEKGDVG 2617
Query: 239 SIDSEGEKPDRGAPQEGGAQRTAG----AGLPGGPQEEGD----GVPCTPASAPTSGPAP 290
+ G K +RG G G AG PG P G G P P + G
Sbjct: 2618 FMGPRGLKGERGVKGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEG 2677
Query: 291 GLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPTELE 350
+GP + G Q P Q G +GE +G D +
Sbjct: 2678 LIGPKG---DRGFDGQPGPKGDQ-----GEKGERGTPGIGGFP------GPSGNDGS--- 2720
Query: 351 ERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGE--TTGESGEAGQDGKPP 408
AGP G ++ P P G R P + G G GE G+ G+P
Sbjct: 2721 ------AGPPGPPGSVGPRGPEGLQGQKGERG--PPGERVVGAPGVPGAPGERGEQGRPG 2772
Query: 409 GDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELGGQ---- 464
G AL + S H + G + P P+ G Q
Sbjct: 2773 PAGPRGEKGEAALTEDDIRGFVRQEMSQHCACQ-GQFIASGSRPLPSYAADTAGSQLHAV 2831
Query: 465 ---NLERDLEGFRVSPQASVVLEHREIADDPLQEPGAQQGIPDTTS 507
+ E RV P+ E+ E + + Q+P A D S
Sbjct: 2832 PVLRVSHAEEEERVPPEDDEYSEYSEYSVEEYQDPEAPWDSDDPCS 2877
Score = 39.7 bits (91), Expect = 0.009
Identities = 82/328 (25%), Positives = 106/328 (32%), Gaps = 49/328 (14%)
Query: 212 LSEQGADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQE 271
L+ + + P D G+ G +G K +RGAP G Q GLPG
Sbjct: 1840 LNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQ--GPPGLPGPVGP 1897
Query: 272 EGDGVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGC 331
G G P P +GP G GS Q P G GE
Sbjct: 1898 PGQGFPGVPGG---TGPKGDRGET-----------GSKGEQGLPGERGLRGEP------- 1936
Query: 332 SSLGMVVIADLSTDPTELEERALE--VAGPDGQASAISPASPRRKAADGGHRRALP---- 385
G V D + ++ AL V D + + P RR+ G P
Sbjct: 1937 ---GSVPNVDRLLETAGIKASALREIVETWDESSGSFLPVPERRRGPKGDSGEQGPPGKE 1993
Query: 386 GCTSLTGE--TTGESGEAGQDGKPPGDVL--VGPTASLALAPGSGESMMGAGDSGHASPD 441
G GE G+ G+ G G PPG L GP LA G+ G G P
Sbjct: 1994 GPIGFPGERGLKGDRGDPGPQG-PPGLALGERGPPGPSGLAGEPGK----PGIPG--LPG 2046
Query: 442 TGPCVNQKQEPGPAQEEAELG--GQNLERDLEGFRVSPQASVVLEHREIADDPLQEPGAQ 499
V + PG E E G G+ G +P + D+P +
Sbjct: 2047 RAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGE 2106
Query: 500 QGIPDTTSELAGQRDHLPHSADQGTWAD 527
QG P L G + + DQG D
Sbjct: 2107 QGPPG----LKGAKGEPGSNGDQGPKGD 2130
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 59.3 bits (142), Expect = 1e-08
Identities = 67/238 (28%), Positives = 87/238 (36%), Gaps = 32/238 (13%)
Query: 229 GDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGD-GVPCTPASAPTSG 287
GD G+K + I +G + D G P G + AG PG P +GD G+ TP + G
Sbjct: 951 GDQGEKGQIGPIGEKGSRGDPGTP--GVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPG 1008
Query: 288 PAPGLGPASWCLEPGSV-AQGSPDPQQTPSRMGREG-EGTHSSLGCSSLGMVVIADLSTD 345
P +G PG G P PQ +P G +G +G G +G+ + D
Sbjct: 1009 PKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLRGEKGD 1068
Query: 346 PTELEERALEVAGPDGQASAISPASPRRKAADGG-HRRALPGCTSLTGE--------TTG 396
Q A P SP K G +PG L G + G
Sbjct: 1069 ----------------QGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSVGYPGSPG 1112
Query: 397 ESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGP-CVNQKQEPG 453
GE G G P D + G L PG+ AG G D P +K EPG
Sbjct: 1113 LPGEKGDKGLPGLDGIPGVKGEAGL-PGTPGPTGPAGQKGEPGSDGIPGSAGEKGEPG 1169
Score = 40.8 bits (94), Expect = 0.004
Identities = 77/300 (25%), Positives = 104/300 (34%), Gaps = 65/300 (21%)
Query: 184 PGS-GDSQPDDPPDRGTGLSASQRASQDHLSEQGADD---SKPETDRV---PGDGGQKEH 236
PGS GD+ P PP G + G+ K E ++ PG G +
Sbjct: 594 PGSRGDTGPPGPPGYGPAGPIGDKGQAGFPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGL 653
Query: 237 LPSIDSEGEKPDRG---------APQEGGAQRTAGAGLPGGPQEEG-DGVPCTPASAPTS 286
S G + DRG P E GA G G PG P +G DG+P
Sbjct: 654 PGSPGFPGPQGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPKGVDGLP--------- 704
Query: 287 GPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSL-GMVVIADLSTD 345
+GP PG+ G P P G +G+ +G L G+ + +
Sbjct: 705 ---GDMGP------PGT--PGRPGFNGLPGNPGVQGQKGEPGVGLPGLKGLPGLPGIPGT 753
Query: 346 PTELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDG 405
P E+ ++ V G G+ AI P PG + GE G G G G
Sbjct: 754 PG--EKGSIGVPGVPGEHGAIGP----------------PGLQGIRGE-PGPPGLPGSVG 794
Query: 406 KP--PGDVLVGPTASLALAPGSGESMMG-AGDSGHASPDTGPCVNQKQEPGPAQEEAELG 462
P PG +GP A P G+ G +G G P PGP ++ G
Sbjct: 795 SPGVPG---IGPPG--ARGPPGGQGPPGLSGPPGIKGEKGFPGFPGLDMPGPKGDKGAQG 849
Score = 40.4 bits (93), Expect = 0.005
Identities = 67/235 (28%), Positives = 83/235 (35%), Gaps = 33/235 (14%)
Query: 243 EGEKPDRGAPQEGGAQRTAGAGLPGGPQ----EEGD-GVPCTPASAPTSGPAPGLGPASW 297
+G+K +RG P G G P GPQ ++GD G P P + T GP G
Sbjct: 45 KGQKGERGLPGLQGVIGFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGASGYPGN 104
Query: 298 CLEPGSVAQ-GSPDPQQTPSRMGREGEGTHSSLGCSSL-------GMVVIADLSTDPTEL 349
PG Q G P P P G +GE LG L G + + DP E+
Sbjct: 105 PGLPGIPGQDGPPGPPGIPGCNGTKGE--RGPLGPPGLPGFAGNPGPPGLPGMKGDPGEI 162
Query: 350 EERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGET--TGESGEAGQDGKP 407
V G + P P G LPG G TG G G G P
Sbjct: 163 ---LGHVPGMLLKGERGFPGIPGTPGPPG-----LPGLQGPVGPPGFTGPPGPPGPPG-P 213
Query: 408 PGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELG 462
PG+ L+ G+ GD G + P P Q QE G + E G
Sbjct: 214 PGE---KGQMGLSFQGPKGDK----GDQGVSGPPGVPGQAQVQEKGDFATKGEKG 261
Score = 40.4 bits (93), Expect = 0.005
Identities = 82/352 (23%), Positives = 108/352 (30%), Gaps = 72/352 (20%)
Query: 172 PEQSSQSPVQAVPGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDRVPGDG 231
P + + +PG P P +G+ S S E+G D P D +PG
Sbjct: 1078 PGEKGEKGSIGIPG----MPGSPGLKGSPGSVGYPGSPGLPGEKG-DKGLPGLDGIPGVK 1132
Query: 232 GQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGA---------GLPGGPQEEGDGVPCTPAS 282
G+ + G +G P G +AG G PG P +GD
Sbjct: 1133 GEAGLPGTPGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKGSKGEVG 1192
Query: 283 APTSGPAPGLGPASWCLEPGSVAQ----GSPDPQQTPSRMGREGEGTHSSLGCSSLGMVV 338
P +PG+ PGS + G P PQ P G G T G
Sbjct: 1193 FPGLAGSPGI--------PGSKGEQGFMGPPGPQGQPGLPGSPGHATEGPKG-------- 1236
Query: 339 IADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGETTGES 398
GP GQ P P G LPG G
Sbjct: 1237 -----------------DRGPQGQPGL--PGLPGPMGPPG-----LPG-------IDGVK 1265
Query: 399 GEAGQDGKPPGDVLVGPTASLAL--APGSGESMMGAGDSGHASPDTGP-CVNQKQEPGPA 455
G+ G G P + GP PG G S G G P P K PG
Sbjct: 1266 GDKGNPGWPGAPGVPGPKGDPGFQGMPGIGGSPGITGSKGDMGPPGVPGFQGPKGLPGLQ 1325
Query: 456 QEEAELGGQNL--ERDLEGFRVSPQASVVLEHREIADDPLQEPGAQ--QGIP 503
+ + G Q + + L G P +++ P PG + QG+P
Sbjct: 1326 GIKGDQGDQGVPGAKGLPGPPGPPGPYDIIKGEPGLPGPEGPPGLKGLQGLP 1377
Score = 39.3 bits (90), Expect = 0.011
Identities = 74/264 (28%), Positives = 83/264 (31%), Gaps = 71/264 (26%)
Query: 227 VPGDGGQKEHLPSIDSE-GEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDG---------V 276
VPG G P E GEK DRG P + GLPG P G V
Sbjct: 377 VPGQAGA----PGFPGERGEKGDRGFPGTSLPGPSGRDGLPGPPGSPGPPGQPGYTNGIV 432
Query: 277 PCTPASAPTSGPAPGL-GPASWCLEPGSVAQ--------------GSPDPQQTPSRMGRE 321
C P GP PG+ G + E G Q G P PQ P +G
Sbjct: 433 ECQPGPPGDQGP-PGIPGQPGFIGEIGEKGQKGESCLICDIDGYRGPPGPQGPPGEIGFP 491
Query: 322 GE-GTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGH 380
G+ G G + V GP G I P K G
Sbjct: 492 GQPGAKGDRGLPG----------------RDGVAGVPGPQGTPGLI--GQPGAKGEPGEF 533
Query: 381 RRAL--------PGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGE--SMM 430
L PG G TG +G G+DG P L GP S GE
Sbjct: 534 YFDLRLKGDKGDPGFPGQPG-MTGRAGSPGRDGHPG---LPGPKGSPGSVGLKGERGPPG 589
Query: 431 GAGDSGHASPDTGPCVNQKQEPGP 454
G G G + DTGP PGP
Sbjct: 590 GVGFPG-SRGDTGP-------PGP 605
Score = 38.1 bits (87), Expect = 0.025
Identities = 83/332 (25%), Positives = 106/332 (31%), Gaps = 73/332 (21%)
Query: 154 PLQEATELGDPTQADSARPEQSSQSPVQAVPGSGDSQPDDPPDRGTGLSASQRASQDHLS 213
P E ++G Q S VPG Q ++G + ++ +
Sbjct: 213 PPGEKGQMGLSFQGPKGDKGDQGVSGPPGVPGQAQVQ-----EKGDFATKGEKGQKGEPG 267
Query: 214 EQG-------ADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLP 266
QG + KP PG G K GEK G P E G G P
Sbjct: 268 FQGMPGVGEKGEPGKPGPRGKPGKDGDK---------GEKGSPGFPGEPGYPGLIGRQGP 318
Query: 267 GGPQEEGDGVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTH 326
G + E G P P +GP G + PG +G P P+ P G+ G
Sbjct: 319 QGEKGEA-GPPGPPGIVIGTGPLGEKGERGYPGTPG--PRGEPGPKGFPGLPGQPGPP-- 373
Query: 327 SSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPG 386
G+ V GQA A P P + G R PG
Sbjct: 374 --------GLPV---------------------PGQAGA--PGFPGERGEKGD--RGFPG 400
Query: 387 CTSLTGETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMG-AGDSGHASPDTGPC 445
TSL G +G G G G P GP G E G GD G P P
Sbjct: 401 -TSLPG-PSGRDGLPGPPGSP------GPPGQPGYTNGIVECQPGPPGDQG---PPGIP- 448
Query: 446 VNQKQEPGPAQEEAELGGQNLERDLEGFRVSP 477
Q G E+ + G L D++G+R P
Sbjct: 449 -GQPGFIGEIGEKGQKGESCLICDIDGYRGPP 479
Score = 34.7 bits (78), Expect = 0.28
Identities = 56/192 (29%), Positives = 63/192 (32%), Gaps = 24/192 (12%)
Query: 228 PGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGA----GLPGG---PQEEGDGVPCTP 280
PG GQ S G G P G+ + G G PGG P GD P P
Sbjct: 546 PGFPGQPGMTGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDTGPPGP 605
Query: 281 ASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRM----GREG-EGTHSSLGCSSLG 335
+GP G A + PGS G P P+ P ++ G G EG S G
Sbjct: 606 PGYGPAGPIGDKGQAGFPGGPGS--PGLPGPKGEPGKIVPLPGPPGAEGLPGSPGFPG-- 661
Query: 336 MVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGETT 395
D T G GQ P P K DG LPG G T
Sbjct: 662 --PQGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPKGVDG-----LPGDMGPPG-TP 713
Query: 396 GESGEAGQDGKP 407
G G G G P
Sbjct: 714 GRPGFNGLPGNP 725
Score = 30.8 bits (68), Expect = 4.0
Identities = 58/231 (25%), Positives = 77/231 (33%), Gaps = 30/231 (12%)
Query: 228 PGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSG 287
PG G+K + + +G K D+G G G+PG Q + G T G
Sbjct: 211 PGPPGEKGQM-GLSFQGPKGDKGDQGVSGPP-----GVPGQAQVQEKG------DFATKG 258
Query: 288 PAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGE-GTHSSLGC-SSLGMVVIADLSTD 345
G + PG +G P + G++G+ G S G G +
Sbjct: 259 EKGQKGEPGFQGMPGVGEKGEPGKPGPRGKPGKDGDKGEKGSPGFPGEPGYPGLIGRQGP 318
Query: 346 PTELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGE--TTGESGEAGQ 403
E E AGP G + P + + G+ PG GE G G GQ
Sbjct: 319 QGEKGE-----AGPPGPPGIVIGTGPLGEKGERGY----PGTPGPRGEPGPKGFPGLPGQ 369
Query: 404 DGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGP 454
G PPG P A APG GD G + PGP
Sbjct: 370 PG-PPG----LPVPGQAGAPGFPGERGEKGDRGFPGTSLPGPSGRDGLPGP 415
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 58.2 bits (139), Expect = 2e-08
Identities = 91/303 (30%), Positives = 109/303 (35%), Gaps = 56/303 (18%)
Query: 179 PVQAVPGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDRVPGDGGQKEHLP 238
PV A+ G+ P PP G S +R G +P PG G+K
Sbjct: 1067 PVGALGLKGNEGPPGPP--GPAGSPGERGPAGAAGPIGIP-GRPGPQGPPGPAGEK---- 1119
Query: 239 SIDSEGEKPDRGAPQEGGAQRTAG----AGLPGGPQEEGD-------GVPCTPASAPTSG 287
+ GEK +G G Q G AG G P E+GD G + G
Sbjct: 1120 --GAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQG 1177
Query: 288 PAPGLGPASWCLEPG-SVAQGSPDPQQTPSRMGREG-EGTHSSLGCSSLGMVVIADLSTD 345
P GP +PG S A G P P+ G++G EG G G V + L
Sbjct: 1178 PPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPG--PPGPVGLQGLPGP 1235
Query: 346 PTELEERALEVAGPDGQASAISPASPR----RKAADGGHRRALPGCTSLTGETTGESGEA 401
P E E G GQ P PR ADG + PG G GE GE
Sbjct: 1236 PGEKGE-----TGDVGQMGPPGPPGPRGPSGAPGADG--PQGPPGGIGNPG-AVGEKGEP 1287
Query: 402 GQDGKP--PGDVLVGPTASLALAPGSGESMMGAGDSGHASP--------DTGPCVNQKQE 451
G+ G+P PG+ GP GES G SG A P D GP K
Sbjct: 1288 GEAGEPGLPGE--GGPPGPKGERGEKGES----GPSGAAGPPGPKGPPGDDGP----KGS 1337
Query: 452 PGP 454
PGP
Sbjct: 1338 PGP 1340
Score = 55.1 bits (131), Expect = 2e-07
Identities = 83/295 (28%), Positives = 104/295 (35%), Gaps = 68/295 (23%)
Query: 216 GADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAG------------- 262
G D K E G+ GQK S+G+K ++G P G Q G
Sbjct: 1153 GEDGDKGEI----GEPGQK------GSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGP 1202
Query: 263 ---------------AGLPGGPQEEG-DGVPCTPASAPTSGPAPGLGPASWCLEPG---- 302
G PG P G G+P P +G +GP PG
Sbjct: 1203 RGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPG---PPGPRGP 1259
Query: 303 SVAQGSPDPQQTPSRMGREGE-GTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDG 361
S A G+ PQ P +G G G G G + P ER + G G
Sbjct: 1260 SGAPGADGPQGPPGGIGNPGAVGEKGEPG--EAGEPGLPGEGGPPGPKGERGEK--GESG 1315
Query: 362 QASAISPASPRRKAADGGHRRALPGCTSLTGE--TTGESGEAGQDGKPPGDVLVGPTASL 419
+ A P P+ D G + + PG G+ GE G AGQDG PPGD G
Sbjct: 1316 PSGAAGPPGPKGPPGDDGPKGS-PGPVGFPGDPGPPGEPGPAGQDG-PPGD--KGDDGE- 1370
Query: 420 ALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELG--GQNLERDLEG 472
PG S G+ G + P ++ PGPA E G G E LEG
Sbjct: 1371 ---PGQTGSPGPTGEPGPSGPP-----GKRGPPGPAGPEGRQGEKGAKGEAGLEG 1417
Score = 53.1 bits (126), Expect = 7e-07
Identities = 105/449 (23%), Positives = 147/449 (32%), Gaps = 95/449 (21%)
Query: 44 EEPEGKLGPVPSTQQHGEEPGKAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSFGRFV 103
E+PE LG P+ + E K + P+E T +P E AP+P + G
Sbjct: 281 EDPED-LGKEPTPSKKPVEAAKETTEVPEELTPTP--------TEAAPMPETSEGAG--- 328
Query: 104 PQFAKSRKTVTRKEEMKDEDRGSGAFSLETIAESSAQSPGCQLLVETLGVPLQEATELGD 163
K+ED G G + + SP L T G G+
Sbjct: 329 ----------------KEEDVGIGDYDYVPSEDYYTPSPYDDL---TYGE--------GE 361
Query: 164 PTQADSARPEQSSQSPVQAVPGSGDSQPDDPPDRGTG------LSASQRASQDHLSEQGA 217
P ++ P S S P PP G + R ++ +
Sbjct: 362 ENPDQPTDPGAGAEIPTSTADTSNSSNPAPPPGEGADDLEGEFTEETIRNLDENYYDPYY 421
Query: 218 DDSKPETDRVPGDGGQKEHLPS--IDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDG 275
D + ++ PG ++ + GEK +G P A G + G P EG
Sbjct: 422 DPTSSPSEIGPGMPANQDTIYEGIGGPRGEKGQKGEP----AIIEPGMLIEGPPGPEG-- 475
Query: 276 VPCTPASAPTSGPAPGLGPASWCLEPGS----------VAQGSPDPQQT----PSRMGRE 321
PA P GP +GP +PG A G P P T P R G
Sbjct: 476 ----PAGLP--GPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGG 529
Query: 322 GEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGHR 381
G+ S G +V A S L++ L + GP G P GG
Sbjct: 530 GD-------AGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGG-L 581
Query: 382 RALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLALAPGSG-------ESMMG-AG 433
+ PG G G G G GKP G + + +G + + G G
Sbjct: 582 KGEPGDVGPQG-PRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPG 640
Query: 434 DSGHASPDTGPCVNQKQEPGPAQEEAELG 462
+ GH D GP PGP ++ E G
Sbjct: 641 EKGHRG-DPGP----SGPPGPPGDDGERG 664
Score = 51.6 bits (122), Expect = 2e-06
Identities = 73/264 (27%), Positives = 93/264 (35%), Gaps = 46/264 (17%)
Query: 228 PGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQ----EEGDGVPCTPASA 283
PG G + I + G ++G P E G G G P GP+ E+G+ P A
Sbjct: 1263 PGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGP 1322
Query: 284 P-TSGPAPGLGPASWCLEPGSVA-QGSPDPQQTPSRMGREG----EGTHSSLGCSSLGMV 337
P GP GP PG V G P P P G++G +G G +
Sbjct: 1323 PGPKGPPGDDGPKG---SPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTG---- 1375
Query: 338 VIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGE--TT 395
S PT +GP G+ PA P + + G + G L G T
Sbjct: 1376 -----SPGPT----GEPGPSGPPGKRGPPGPAGPEGRQGEKGAK----GEAGLEGPPGKT 1422
Query: 396 GESGEAGQDGKPPGDVL---VGPTASLAL----APGSGESMMGAGDSGHASPDTGPCVNQ 448
G G G GKP D L GP L P MG D+GP +
Sbjct: 1423 GPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGP-KGE 1481
Query: 449 KQEP------GPAQEEAELGGQNL 466
K P GP E+ E G + L
Sbjct: 1482 KGHPGLIGLIGPPGEQGEKGDRGL 1505
Score = 48.1 bits (113), Expect = 2e-05
Identities = 83/295 (28%), Positives = 103/295 (34%), Gaps = 39/295 (13%)
Query: 184 PGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDRVPGDGGQKEHLPSIDSE 243
PG +P P + G +R + GA P PGD G K +
Sbjct: 1287 PGEA-GEPGLPGEGGPPGPKGERGEKGESGPSGAA-GPPGPKGPPGDDGPKGSPGPVGFP 1344
Query: 244 GEKPDRGAPQEGGAQRTAGAGLPGGPQEEGD-GVPC-TPASAPTSGPAPGLGPASWCLEP 301
G D G P E G AG G P ++GD G P T + PT P P GP P
Sbjct: 1345 G---DPGPPGEPGP-----AGQDGPPGDKGDDGEPGQTGSPGPTGEPGPS-GP------P 1389
Query: 302 GSVAQGSPDPQQTPSRMGREG-------EGTHSSLGC----SSLGMVVIADLSTDPTELE 350
G +G P P R G +G EG G + G L P +
Sbjct: 1390 GK--RGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVG 1447
Query: 351 ERALEVA-GPDGQASAISPASPRRKAADGGHR--RALPGCTSLTGETTGESGEAGQDGKP 407
E+ L + GPDG + P D G + + PG L G GE GE G G P
Sbjct: 1448 EQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPP-GEQGEKGDRGLP 1506
Query: 408 PGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELG 462
GP + SG + G G P GP K GP + E G
Sbjct: 1507 GPQGSSGPKGEQGITGPSG-PIGPPGPPGLPGP-PGP-KGAKGSSGPTGPKGEAG 1558
Score = 46.2 bits (108), Expect = 9e-05
Identities = 113/447 (25%), Positives = 144/447 (32%), Gaps = 87/447 (19%)
Query: 46 PEGKLGPVPSTQQHGEEPGKAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSFGRFVPQ 105
P+G +GP P + +PG D G P + EK P Q G P+
Sbjct: 734 PQGAIGP-PGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPR 792
Query: 106 FAKSRKTVTRKEEMKDEDRGSGAFSLETIAESSAQSPGCQLLVETLGVPLQEATELGDPT 165
K + + K E +G F PG + + G + E+G P
Sbjct: 793 GVKGADGIRGLKGTKGE-KGEDGF------------PGFKGDMGIKG----DRGEIGPP- 834
Query: 166 QADSARPEQSSQSPVQAVPGSGDSQPDDPPDRGTGLSA----------SQRASQDHLSEQ 215
R E + P +GD P PP L + S
Sbjct: 835 ---GPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFP 891
Query: 216 GADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQ-EEGD 274
GA+ K PG G + GE+ RG + G + +G P GP E G
Sbjct: 892 GANGEKGGRG-TPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGP 950
Query: 275 GVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGE-GTHSSLGCSS 333
P PT P P GP G P P G+ GE G G
Sbjct: 951 NGP----QGPTGFPGP-KGP-----------PGPPGKDGLPGHPGQRGETGFQGKTGPPG 994
Query: 334 LGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGE 393
VV T T GP G+ P P + + LPG G
Sbjct: 995 PPGVVGPQGPTGET----------GPMGERGHPGPPGPPGE-------QGLPGLAGKEG- 1036
Query: 394 TTGESGEA---GQDGKP-----PGD-VLVGPTASLAL--------APGSGESMMGAGDSG 436
T G+ G A G+DG P PGD L GP +L L PG S G +G
Sbjct: 1037 TKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAG 1096
Query: 437 HASPDTGPCVNQKQ-EPGPAQEEAELG 462
A P P Q PGPA E+ G
Sbjct: 1097 AAGPIGIPGRPGPQGPPGPAGEKGAPG 1123
Score = 44.3 bits (103), Expect = 3e-04
Identities = 121/485 (24%), Positives = 149/485 (30%), Gaps = 98/485 (20%)
Query: 52 PVPSTQQH-GEEPGKAVSS-----SPDEETGSPCRLLRQPEKEPAPLPPSQNSFGRFVPQ 105
P+P T + G+E + S D T SP L E E P P+ G +P
Sbjct: 319 PMPETSEGAGKEEDVGIGDYDYVPSEDYYTPSPYDDLTYGEGEENPDQPTDPGAGAEIPT 378
Query: 106 FAKSRKTVTRKEEMKDE--DRGSGAFSLETI---------------AESSAQSPGC---- 144
+ E D G F+ ETI + S PG
Sbjct: 379 STADTSNSSNPAPPPGEGADDLEGEFTEETIRNLDENYYDPYYDPTSSPSEIGPGMPANQ 438
Query: 145 QLLVETLGVPLQEATELGDPTQADSARPEQSSQSPVQAVPGSGDSQPDDPPDRGTGLSAS 204
+ E +G P E + G+P + + P G + PP GT
Sbjct: 439 DTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGP------EGPAGLPGPP--GTMGPTG 490
Query: 205 QRASQDHLSEQGADDSKPETDRVPGDGGQKEHLP----SIDSEGEKPDRGAPQEGGAQ-- 258
Q G P D +PG G LP G K + QE AQ
Sbjct: 491 QVGDPGERGPPGRP-GLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAI 549
Query: 259 ----RTAGAGLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWCLEPGSVA-------QG 307
R A G P GP G P P P SG G EPG V QG
Sbjct: 550 LQQARLALRG-PAGPMGL-TGRP-GPVGPPGSGGLKG--------EPGDVGPQGPRGVQG 598
Query: 308 SPDPQQTPSRMGREG-EGTHSSLGCSS-LGMVVIADLSTDPTELEERALE-------VAG 358
P P P R GR G +G G + G L+ P E R G
Sbjct: 599 PPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPG 658
Query: 359 PDGQASAISPASPRRKAADGGHRRAL-----------PGCTSLTGET--------TGESG 399
DG+ PR + G R L PG T + G+ GE G
Sbjct: 659 DDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPG 718
Query: 400 EAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEA 459
GQ G P L GP ++ PG + G G D P PG
Sbjct: 719 PPGQQGNPGAQGLPGPQGAIG-PPGEKGPLGKPGLPGMPGADGPP-----GHPGKEGPPG 772
Query: 460 ELGGQ 464
E GGQ
Sbjct: 773 EKGGQ 777
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 57.0 bits (136), Expect = 5e-08
Identities = 75/275 (27%), Positives = 103/275 (37%), Gaps = 50/275 (18%)
Query: 212 LSEQGADDSK--PETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGA-GLPGG 268
+ E+GA ++ P +D +PG G + + S G K +G P G GA GL G
Sbjct: 518 VGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGN 577
Query: 269 PQEEGDGVPCTPASAPTSGPAPGLGPASWCL--EPGSVAQGSPDPQQTPSRMGREGEGTH 326
P +G P AP PG P S + +PGS+ G P P+ + G+ GE +
Sbjct: 578 PGVQGPEGKLGPLGAPGEDGRPG-PPGSIGIRGQPGSM--GLPGPKGSSGDPGKPGEAGN 634
Query: 327 SSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPG 386
+ + G DG+ P P A + G + PG
Sbjct: 635 AGV---------------------PGQRGAPGKDGEVGPSGPVGPPGLAGERG-EQGPPG 672
Query: 387 CTSLTGETTGESGEAGQDGKP-----PGDV-LVGPTASLALAPGSGE----SMMG----A 432
T G G G G+ GKP PGD VGP GE + G
Sbjct: 673 PTGFQG-LPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEK 731
Query: 433 GDSGHASPDTGPCVNQKQEPGPAQEEAELGGQNLE 467
G +G PD GP K PGP+ + G L+
Sbjct: 732 GMAGGHGPD-GP----KGSPGPSGTPGDTGPPGLQ 761
Score = 49.7 bits (117), Expect = 8e-06
Identities = 96/357 (26%), Positives = 118/357 (33%), Gaps = 83/357 (23%)
Query: 172 PEQSSQSPVQAVPGSGDS--------QPDDPPDRG----TGLSASQRASQDHLSEQGADD 219
P + + Q VPG + + +P +RG TGL + + H G D
Sbjct: 686 PGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGH----GPDG 741
Query: 220 SK--PETDRVPGDGGQK--EHLPS----IDSEGEKPDRGAPQEGGAQRTAG----AGLPG 267
K P PGD G + +P + G K DRG E GA+ TAG GLPG
Sbjct: 742 PKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPG 801
Query: 268 GPQEEGDGVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSP----------DPQQTPSR 317
G P P GP +GP PGS + P P P
Sbjct: 802 PLGPPGPAGPTGEKGEP--GPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGV 859
Query: 318 MGREGE-------------------GTHSSLGCSSLGMVVIADLSTDPTELEERALEVAG 358
G GE G H G L T A V G
Sbjct: 860 KGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRV-G 918
Query: 359 PDGQASAISPASPRRKAADGG--HRRALPGCTSLTGET--------TGESGEAGQDGKPP 408
P G A A PA P + G R PG G+ G+ G+ G+DG+P
Sbjct: 919 PPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPG 978
Query: 409 GDVLVGPTAS-----LALAPGS-GESMM-----GAGDSGHASPDTGPCVNQKQEPGP 454
D GP + + PG GE M AG G P TG K PGP
Sbjct: 979 PDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGP-TG-ATGDKGPPGP 1033
Score = 49.7 bits (117), Expect = 8e-06
Identities = 98/387 (25%), Positives = 125/387 (32%), Gaps = 81/387 (20%)
Query: 158 ATELGDPTQADSARP-----EQSSQSP--VQAVPGS----GDSQPDDPPDRGTGLSASQR 206
A +G P A + P E + P ++ PGS GD P PP G G
Sbjct: 914 AGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPG-GPGDKGDP- 971
Query: 207 ASQDHLSEQGADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAG-AGL 265
+D +P D PG G + G++ +RG P G T G G
Sbjct: 972 ----------GEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGP 1021
Query: 266 PGGPQEEGDGVPCTP--ASAPTSGPAPGLGPASWCLEPGSVA-------QGSPDPQQTPS 316
G ++G P P ++ P P P GPA PG +G P P P
Sbjct: 1022 TGATGDKGPPGPVGPPGSNGPVGEPGPE-GPAGNDGTPGRDGAVGERGDRGDPGPAGLPG 1080
Query: 317 RMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAA 376
G GT +G A DP + G G+ P PR
Sbjct: 1081 SQG--APGTPGPVGAPG-----DAGQRGDPG--SRGPIGPPGRAGKRGLPGPQGPRGDKG 1131
Query: 377 DGGHR--------RALPGCTSLTGE--TTGESGEAGQDGK-----PPGDVLVGPTASLA- 420
D G R R G L G GE G AG G PPG VGP+
Sbjct: 1132 DHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGP--VGPSGKEGN 1189
Query: 421 ---LAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELGGQNLERDLEGFRVSP 477
L P + G+ G A P+ P EPGP G +
Sbjct: 1190 PGPLGPIGPPGVRGS--VGEAGPEGPP-----GEPGPPGPPGP----------PGHLTAA 1232
Query: 478 QASVVLEHREIADDPLQEPGAQQGIPD 504
++ + E DPL E Q PD
Sbjct: 1233 LGDIMGHYDESMPDPLPEFTEDQAAPD 1259
Score = 43.1 bits (100), Expect = 8e-04
Identities = 73/287 (25%), Positives = 103/287 (35%), Gaps = 33/287 (11%)
Query: 187 GDSQPDDPPDR-GTGLSASQRASQDHLSEQGADDSK--PETDRVPGDGGQKEHLPSIDSE 243
G P+ PP + G + + + G+ ++ P +PG G + H +
Sbjct: 252 GSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPK 311
Query: 244 GEKPDRGAPQEGGAQRTAGA-------GLPG-----GPQEEGD--GVPCTPASAPTSGPA 289
GE G+ E G GA G+PG GPQ G P GP
Sbjct: 312 GEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPL 371
Query: 290 PGLGPASWCLEPGSVAQGSPDPQQTP-SRMGREGE-GTHSSLGCSSLGMVVIADLSTDPT 347
G + + PG + P + P G+ GE G +G L + D T
Sbjct: 372 GIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTD-GTPGA 430
Query: 348 ELEERALEVAGPDGQASAISPASPRRKAADGGHR-RALPGCTSLTGETTGESGEAGQDGK 406
+ + +GP G SA P SP + + G R PG + G GEAG G+
Sbjct: 431 KGPTGSPGTSGPPG--SAGPPGSPGPQGSTGPQGIRGQPGDPGV----PGFKGEAGPKGE 484
Query: 407 PPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPG 453
P + GP PG GD G P GP V ++ PG
Sbjct: 485 PGPHGIQGPIG----PPGEEGKRGPRGDPGTVGP-PGP-VGERGAPG 525
Score = 41.2 bits (95), Expect = 0.003
Identities = 72/243 (29%), Positives = 83/243 (34%), Gaps = 45/243 (18%)
Query: 225 DRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAP 284
D G G Q +P S G RG G Q GAG G P E GD P P +
Sbjct: 199 DEKSGLGSQVGLMPG--SVGPVGPRGPQGLQGQQ--GGAGPTGPPGEPGDPGPMGPIGSR 254
Query: 285 TSGPAPGL----GPASWCLEPGSVA-QGSPDPQQTPSRMGREG-EGTHSSLGCSSLGMVV 338
PG G PG V GSP + P G G +G G V
Sbjct: 255 GPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEV 314
Query: 339 IADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGE--TTG 396
A S AGP G A+ P P R +PG G G
Sbjct: 315 GAPGSKGE----------AGPTGPMGAMGPLGP----------RGMPGERGRLGPQGAPG 354
Query: 397 ESGEAGQDGKPPGDVLVGPTASLALAPGSG----ESMMG-AGDSGHASPDTGPCVNQKQE 451
+ G G GKP GP L + SG M G AG +G P+ GP Q+ E
Sbjct: 355 QRGAHGMPGKP------GPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPE-GP-QGQRGE 406
Query: 452 PGP 454
GP
Sbjct: 407 TGP 409
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 56.6 bits (135), Expect = 7e-08
Identities = 96/350 (27%), Positives = 116/350 (33%), Gaps = 50/350 (14%)
Query: 162 GDPTQADSARPEQSSQSPVQAVPG-SGDSQPDDPPDRGTGLSASQRASQDHLSEQGADDS 220
G P P P PG G P PP G S +A L +
Sbjct: 83 GKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPP----GFSRMGKAGPPGLPGKVGPPG 138
Query: 221 KPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTP 280
+P PG G++ RG P G +G +PG P + GVP P
Sbjct: 139 QPGLRGEPG------------IRGDQGLRGPPGPPGLPGPSGITIPGKPGAQ--GVPGPP 184
Query: 281 ASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIA 340
GP GP G G P P + G G G + LG +
Sbjct: 185 GFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGG--APGPPGLPGPAGLGKPGLD 242
Query: 341 DLSTDPTELEERALE-VAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGE--TTGE 397
L P + E V GP G+ A+ P P DG +PG L G +G
Sbjct: 243 GLPGAPGDKGESGPPGVPGPRGEPGAVGPKGP--PGVDG---VGVPGAAGLPGPQGPSGA 297
Query: 398 SGEAGQDGKPPGDVLVGPTASLALAPGSGESMMG-AGDSGHASPDTGP-CVNQKQEPGPA 455
GE G G PPG L+GPT G M G G G P P + + EPG
Sbjct: 298 KGEPGTRG-PPG--LIGPT---------GYGMPGLPGPKGDRGPAGVPGLLGDRGEPGED 345
Query: 456 QEEAELGGQNLERDLEGFRVSPQASVVLEHREIADDPLQE--PGAQQGIP 503
E E G Q L G S L R P E PG G+P
Sbjct: 346 GEPGEQGPQGL-----GGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVP 390
Score = 46.2 bits (108), Expect = 9e-05
Identities = 72/271 (26%), Positives = 89/271 (32%), Gaps = 52/271 (19%)
Query: 181 QAVPGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDRVPGDGGQKEHLPSI 240
Q PG +P P DRG L Q L P +PG G + P +
Sbjct: 187 QGEPGP-QGEPGPPGDRG--LKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGK--PGL 241
Query: 241 D----SEGEKPDRGAPQEGGAQRTAGA-GLPGGPQEEGDGVPCTPASAPTSGPA------ 289
D + G+K + G P G + GA G G P +G GVP GP+
Sbjct: 242 DGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEP 301
Query: 290 -----PGL-GPASWCLEPGSVAQGSPDPQQTPSRMGREGE----GTHSSLGCSSLGMVVI 339
PGL GP + + +G P P +G GE G G LG
Sbjct: 302 GTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLG---- 357
Query: 340 ADLSTDPTELEERA-----LEVAGPDGQASAISPASPRRKAADGGH-----------RRA 383
P L A GP G+A P D G R
Sbjct: 358 -----GPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERG 412
Query: 384 LPGCTSLTGETTGESGEAGQDGKPPGDVLVG 414
LPG G T G GE G G+P G + G
Sbjct: 413 LPGAHGPPGPT-GPKGEPGFTGRPGGPGVAG 442
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 56.2 bits (134), Expect = 9e-08
Identities = 102/452 (22%), Positives = 159/452 (35%), Gaps = 70/452 (15%)
Query: 44 EEPEGKLGPVPSTQQHGEEPGKAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSFGRFV 103
+E EG+ P + E G+A S D ET QPE E A P ++
Sbjct: 1861 QEAEGEAQPESEDVEAPEAEGEAQPESEDVETPE-AEWEVQPESEGAEAPEAEKEAQ--- 1916
Query: 104 PQFAKSRKTVTRKEEMKDEDRGSGAFSLETIAESSAQSPGCQLLVETLGVPLQEATELGD 163
++ + E +DE GA + E AE +AQ Q E+ + QEA E
Sbjct: 1917 ---PETESVEALETEGEDEPESEGAEAQE--AEEAAQEAEGQTQPESEVIESQEAEEEAQ 1971
Query: 164 PTQADSARPE------------QSSQSPVQAVPGSGDSQ--PDDPPDRGTGLSASQRASQ 209
P D E Q V+A G+ Q ++ G+ A ++
Sbjct: 1972 PESEDVEALEVEVETQEAEGEAQPESEDVEAPEAEGEMQEAEEEAQPESDGVEAQPKSEG 2031
Query: 210 DHLSEQGADDSKPETDRVPGDGG-----QKEHLPSIDSEGEKPDRGAPQEG---GAQRTA 261
+ E + K E D P G +E + E ++ + A E AQ
Sbjct: 2032 EEAQEVEGETQKTEGDAQPESDGVEAPEAEEEAQEAEGEVQEAEGEAHPESEDVDAQEAE 2091
Query: 262 GAGLP-----GGPQEEGDGVPCTPASAP-TSGPAPGLGPASWCLE-PGSVAQGSPDPQQT 314
G P P+ EG+ AP T G A P S +E P + + P+ +
Sbjct: 2092 GEAQPESEGVEAPEAEGEAQKAEGIEAPETEGEAQ---PESEGIEAPEAEGEAQPESEGV 2148
Query: 315 PSRMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRK 374
++ EGE S G + A + + + E +E +G+A S
Sbjct: 2149 EAQ-DAEGEAQPESEG-------IEAQEAEEEAQPELEGVEAPEAEGEAQPESEGI-EAP 2199
Query: 375 AADGGHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLALAP----------- 423
A+G + L G E+ EA ++ +P + + P A P
Sbjct: 2200 EAEGEAQPELEGV---------EAPEAEEEAQPEPEGVETPEAEGEAQPESEGETQGEKK 2250
Query: 424 GSGESMMGAGDSGHASPDTGPCVNQKQEPGPA 455
GS + +G G S AS + P + P P+
Sbjct: 2251 GSPQVSLGDGQSEEASESSSPVPEDRPTPPPS 2282
Score = 45.1 bits (105), Expect = 2e-04
Identities = 121/521 (23%), Positives = 178/521 (34%), Gaps = 113/521 (21%)
Query: 65 KAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSFGRFVPQFAKSRKTVTRKEEMKDEDR 124
+ SS+P T S R + A PS GR P+ R + RK+ D
Sbjct: 622 EGASSTPSTCTSSQQGQRRHRSRASAMSSPSSPGLGRVAPR-GHPRHSHYRKDTHSPLD- 679
Query: 125 GSGAFSLETIAESSAQSPGCQLLVETLGVPLQEATELGDPTQAD-SARPEQSSQSPVQAV 183
++ + + P + + VP + TQA + RP S P Q +
Sbjct: 680 -------SSVTKQVPRPPERRRACQDGSVPRYSGSSSSTRTQASGNLRPPSSGSLPSQDL 732
Query: 184 PGSGDSQ--PDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDRVP---GDGGQKEHLP 238
G+ + P D +G+S S + G+ P +P D K
Sbjct: 733 LGTSSATVTPAVHSDFVSGVSPHNAPSAGWAGDAGSRTCSPAP--IPPHTSDSCSKSGAA 790
Query: 239 SIDSEGEKPDR---------GAPQEG--GAQRTAGAGLPG---------GPQEEGD---- 274
S+ E + G P++G G R+ PG GP E
Sbjct: 791 SLGEEARDTPQPSSPLVLQVGRPEQGAVGPHRSHCCSQPGTQPAQEAQRGPSPEASWLCG 850
Query: 275 --------GVPC----------TPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPS 316
G PC T +S ++ PG P +PG SP P S
Sbjct: 851 RYCPTPPRGRPCPQRRSSSCGSTGSSHQSTARGPGGSPQEGTRQPGPTP--SPGPNSGAS 908
Query: 317 RMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEV-AGPDGQ--ASAISPASPRR 373
R + +S G S G+ EE+ L GP GQ AS +SP+S R
Sbjct: 909 RR------SSASQGAGSRGL------------SEEKTLRSGGGPQGQEEASGVSPSSLPR 950
Query: 374 KAADGGHRRALPGCT--------SLTGETTGESG--------EAGQDG--KPPGDVLVGP 415
+ + R L L ETTG +G + G D + G+
Sbjct: 951 SSPEAVVREWLDNIPEEPILMTYELADETTGAAGGGLRGPEVDPGDDHSLEGLGEPAQAG 1010
Query: 416 TASLALAPGSGE----SMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELGGQNLERDLE 471
SL PG +++G+ D+G P +G V Q P E G + E
Sbjct: 1011 QQSLEGDPGQDPEPEGALLGSSDTG---PQSGEGVPQGAAPEGVSEAPAEAGADREAP-A 1066
Query: 472 GFRVSPQASVVLEHREIADDPLQEP--GAQQGIPDTTSELA 510
G RVS +A L R A + G++QG P + E++
Sbjct: 1067 GCRVSLRA---LPGRVSASTQIMRALMGSKQGRPSSVPEVS 1104
Score = 42.0 bits (97), Expect = 0.002
Identities = 68/249 (27%), Positives = 94/249 (37%), Gaps = 40/249 (16%)
Query: 32 PQSSMLGCLHHPEEPEGKLGPVPSTQQHGEEPGKAVSSSPDEETGSPCRLLRQPEKEPAP 91
P++S L + P P G+ P + G G + S+ GSP RQP P+P
Sbjct: 843 PEASWLCGRYCPTPPRGRPCPQRRSSSCGST-GSSHQSTARGPGGSPQEGTRQPGPTPSP 901
Query: 92 LPPSQNSFGRFVPQFAKSR-----KTVTRKEEMKDEDRGSGAFSLETIAESSAQSPGCQL 146
P S S Q A SR KT+ + ++ SG S ++ SS ++ +
Sbjct: 902 GPNSGASRRSSASQGAGSRGLSEEKTLRSGGGPQGQEEASGV-SPSSLPRSSPEAVVREW 960
Query: 147 LVETLGVPLQEATELGDPTQADSARPEQSSQSPVQAVPGSGDSQPD-DPPDRGT--GLSA 203
L P+ EL D T G G P+ DP D + GL
Sbjct: 961 LDNIPEEPILMTYELADET---------------TGAAGGGLRGPEVDPGDDHSLEGLGE 1005
Query: 204 SQRASQDHLSEQGADDSKPE------TDRVPGDGGQKEHLPSIDSEGEKPD--RGAPQEG 255
+A Q L D +PE +D P G E +P +G P+ AP E
Sbjct: 1006 PAQAGQQSLEGDPGQDPEPEGALLGSSDTGPQSG---EGVP----QGAAPEGVSEAPAEA 1058
Query: 256 GAQRTAGAG 264
GA R A AG
Sbjct: 1059 GADREAPAG 1067
Score = 31.2 bits (69), Expect = 3.0
Identities = 53/249 (21%), Positives = 79/249 (31%), Gaps = 29/249 (11%)
Query: 44 EEPEGKLGPVPSTQQHGEEPGKAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSFGRFV 103
E PE + + + E G+A S D + QPE E P ++
Sbjct: 2056 EAPEAEEEAQEAEGEVQEAEGEAHPESEDVDA-QEAEGEAQPESEGVEAPEAEGE----- 2109
Query: 104 PQFAKSRKTVTRKEEMKDEDRGSGAFSLETIAESS-----AQSPGCQLLVETLGVPLQEA 158
Q A+ + + E + E G A E A+ AQ + E+ G+ QEA
Sbjct: 2110 AQKAEGIEAPETEGEAQPESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEA 2169
Query: 159 TELGDPTQADSARPE-----QSSQSPVQAVPGSGDSQPD-------------DPPDRGTG 200
E P PE Q ++A G++QP+ P G
Sbjct: 2170 EEEAQPELEGVEAPEAEGEAQPESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVE 2229
Query: 201 LSASQRASQDHLSEQGADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRT 260
++ +Q + + K GDG +E S E P GG
Sbjct: 2230 TPEAEGEAQPESEGETQGEKKGSPQVSLGDGQSEEASESSSPVPEDRPTPPPSPGGDTPH 2289
Query: 261 AGAGLPGGP 269
G GP
Sbjct: 2290 QRPGSQTGP 2298
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 53.9 bits (128), Expect = 4e-07
Identities = 67/287 (23%), Positives = 93/287 (32%), Gaps = 26/287 (9%)
Query: 178 SPVQAVPGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDRVPGDGGQKEHL 237
SP A G+ ++ + D G+ A + + H D+ + G GG +
Sbjct: 33 SPSAAAAGAAGARGSETGDPGSPRGAEEPGKKRHERLFHRQDALWISTSSAGTGGAEP-- 90
Query: 238 PSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASW 297
P++ P R G + + A PG P G P APTS P L SW
Sbjct: 91 PALSPAPASPARPVSPAPGRRLSLWAVPPGPPLSGGLSPDPKPGGAPTSSRRPLLSSPSW 150
Query: 298 CLEPGSVAQGSPDPQQTPSRMGREGEG------THSSLGCSSLGMVVIADLSTDPTELEE 351
G P+P+ GR G G H G L + +
Sbjct: 151 ---------GGPEPE------GRAGGGIPGSSSPHPGTGSRRLKVAPPPPAPKPCKTVTT 195
Query: 352 RALEVAGPDGQASAIS-PASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKPPGD 410
+ G G S +S P S + G A G + T +G G G
Sbjct: 196 SGAKAGGGKGAGSRLSWPESEGKPRVKGSKSSAGTGASVSAAATAAAAGGGGSTASTSGG 255
Query: 411 VLVGPTASLALAPGSGESMMGAGDSGHASPDTG--PCVNQKQEPGPA 455
V G A L+P G+S H P G P + P PA
Sbjct: 256 VGAGAGARGKLSPRKGKSKTLDNSDLHPGPPAGSPPPLTLPPTPSPA 302
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 53.9 bits (128), Expect = 4e-07
Identities = 79/320 (24%), Positives = 105/320 (32%), Gaps = 53/320 (16%)
Query: 166 QADSARPEQSSQSPVQAVPGS-GDSQPDDPPD-------RGTGLSASQRASQDHLSEQGA 217
+ + P + +Q PG G P PP G +A + H+ G
Sbjct: 352 KGEKGDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGP 411
Query: 218 DDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGA-------GLPGGPQ 270
PG G + +GE+ ++GA E G+ G GLPG P
Sbjct: 412 SGP-------PGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPG 464
Query: 271 EEGDGVPCTPASAPTSGP--------APGL-GPASWCLEPGSVAQGSPDPQQTPSRMGRE 321
+ DG P S GP APG+ G +PG G P P P G
Sbjct: 465 KGKDGEPGLRGSPGLPGPLGTKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDKGSP 524
Query: 322 GE-------GTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRK 374
G G G L ++ P ++ A +V P P K
Sbjct: 525 GSRGLPGFPGPQGPAGRDGLSSLL------SPGDINLLAKDVCNDCPPGPPGLPGLPGFK 578
Query: 375 AADGGHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGD 434
G +PG G T G+ GEAG G P + GP S GE + GD
Sbjct: 579 GDKG-----VPGKPGREG-TEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGE-VGQKGD 631
Query: 435 SGHASPDTGPCVNQKQEPGP 454
GH P + PGP
Sbjct: 632 QGH--PGVPGFMGPPGNPGP 649
Score = 50.4 bits (119), Expect = 5e-06
Identities = 68/233 (29%), Positives = 79/233 (33%), Gaps = 52/233 (22%)
Query: 226 RVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGP--------QEEGDGVP 277
R+PG+ G K GEK D G P E G Q G P GP QE G P
Sbjct: 344 RMPGEQGPK---------GEKGDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAP 394
Query: 278 CTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMV 337
+ G GP+ PGSV G+P + TP + G GE +
Sbjct: 395 GAAGNPGAPGHVGAPGPSG---PPGSV--GAPGLRGTPGKDGERGEKGAAG--------- 440
Query: 338 VIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADG-GHRRALPGCTSLTGETTG 396
EE + GP G A P K DG R PG G T G
Sbjct: 441 ------------EEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGPLG-TKG 487
Query: 397 ESGEAGQDGKP-----PGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGP 444
+ G G G P PG + GP PG S G G P GP
Sbjct: 488 DRGAPGIPGSPGSRGDPGIGVAGPPGPSG-PPGDKGSPGSRGLPGFPGPQ-GP 538
Score = 44.7 bits (104), Expect = 3e-04
Identities = 80/308 (25%), Positives = 104/308 (33%), Gaps = 53/308 (17%)
Query: 193 DPPDRGTGLSASQRASQDHLSEQG--------ADDSKPETDRVPGDGGQKEHLPSIDSEG 244
+P +RG + + + EQG + P PG G+K +G
Sbjct: 251 EPGERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEK------GDQG 304
Query: 245 EKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSGPAPG-LGPASWCLEPGS 303
EK + G P G + G P GP G+P T + PG GP +PG
Sbjct: 305 EKGELGLPGLKGDRGEKGEAGPAGP----PGLPGTTSLFTPHPRMPGEQGPKGEKGDPG- 359
Query: 304 VAQGSPDPQQTPSRMGREG----------EGTHSSLGCS----SLGMVVIADLSTDPTEL 349
G P Q P +G +G EG H + G + + G V S P +
Sbjct: 360 -LPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSV 418
Query: 350 EERALE-VAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGET-TGESGEAGQDGKP 407
L G DG+ A G R PG L G G+ GE G G P
Sbjct: 419 GAPGLRGTPGKDGERGEKGAAGEEGSPGPVG-PRGDPGAPGLPGPPGKGKDGEPGLRGSP 477
Query: 408 PGDVLVGP--TASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELGGQN 465
L GP T APG S GD G + PGP+ + G
Sbjct: 478 G---LPGPLGTKGDRGAPGIPGSPGSRGDPG---------IGVAGPPGPSGPPGDKGSPG 525
Query: 466 LERDLEGF 473
R L GF
Sbjct: 526 -SRGLPGF 532
Score = 44.3 bits (103), Expect = 3e-04
Identities = 62/220 (28%), Positives = 79/220 (35%), Gaps = 36/220 (16%)
Query: 214 EQGAD--DSKPETDRVPGDGGQKEHLPSIDS-------EGEKPDRGAPQEGGAQRTAGA- 263
E+G + D KP PG G+ LP + +G D GAP G G
Sbjct: 688 EEGKEGRDGKPGPPGEPGKAGEPG-LPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGLP 746
Query: 264 GLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGE 323
G G P ++GD P P GP GP PGS G P P TP + G +GE
Sbjct: 747 GQEGLPGKDGDTGPTGP-----QGPQGPRGPPGKNGSPGS--PGEPGPSGTPGQKGSKGE 799
Query: 324 GTHSSLGCSSLGMVVIADLSTDPTELEERALE----VAGPDGQ----ASAISPASPRRKA 375
S G+ P E E+ + V G G+ P K
Sbjct: 800 N-------GSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGEPGFKGERGDPGIKGDKG 852
Query: 376 ADGGHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVGP 415
GG + PG + G G +G G G P + VGP
Sbjct: 853 PPGG--KGQPGDPGIPGH-KGHTGLMGPQGLPGENGPVGP 889
Score = 42.7 bits (99), Expect = 0.001
Identities = 100/391 (25%), Positives = 129/391 (32%), Gaps = 117/391 (29%)
Query: 162 GDPTQADSARPEQSSQSPVQAVPGS----GDSQPDDPPDRGTGLSASQRASQDHLSEQGA 217
GDP + P S + PGS G P P R S + L++
Sbjct: 502 GDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGLSSLLSPGDINLLAKDVC 561
Query: 218 DDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGA-------GLPG--- 267
+D P +PG LP G K D+G P + G + T G GLPG
Sbjct: 562 NDCPPGPPGLPG-------LP-----GFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPG 609
Query: 268 --GPQ-------------EEGD----GVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGS 308
GPQ ++GD GVP GP G A PG QGS
Sbjct: 610 IAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPG--IQGS 667
Query: 309 PDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALE-VAGPDGQ-ASAI 366
P + P G G L P E + + GP G+ A
Sbjct: 668 PGKEGPPGPQGPSG-------------------LPGIPGEEGKEGRDGKPGPPGEPGKAG 708
Query: 367 SPASPRRKAADGGHRRALPGCTSLTGET--------TGESGEAGQDGKPPGDVLVGPTAS 418
P P + A G PG TG++ +G G GQ+G P D GPT
Sbjct: 709 EPGLPGPEGARGP-----PGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPT-- 761
Query: 419 LALAPGSGESMMGAGDSGHASPDTGPCVN----QKQEPGPAQEEAELG--GQNLERDLEG 472
G G P P N EPGP+ + G G+N L G
Sbjct: 762 --------------GPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPG 807
Query: 473 FRVSPQASVVLEHREIADDPLQEPGAQQGIP 503
F + P+ P EPG ++G+P
Sbjct: 808 F-LGPRG------------PPGEPG-EKGVP 824
Score = 32.7 bits (73), Expect = 1.0
Identities = 37/127 (29%), Positives = 46/127 (36%), Gaps = 7/127 (5%)
Query: 181 QAVPGS-GDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDR-VPGDGGQKEHLP 238
Q PG G D P R + R Q L E + P+ +R GD G P
Sbjct: 943 QGRPGPPGPPGKDGLPGRAGPMGEPGRPGQGGL-EGPSGPIGPKGERGAKGDPGA----P 997
Query: 239 SIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWC 298
+ GE G P + G A GLPG P +G+ P P PG S C
Sbjct: 998 GVGLRGEMGPPGIPGQPGEPGYAKDGLPGIPGPQGETGPAGHPGLPGPPGPPGQCDPSQC 1057
Query: 299 LEPGSVA 305
S+A
Sbjct: 1058 AYFASLA 1064
Score = 31.6 bits (70), Expect = 2.3
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 393 ETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEP 452
+ GE GE G+DG P L G LA GE G++G P V + E
Sbjct: 247 QLNGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGEK----GEAGLPGAPGFPGV--RGEK 300
Query: 453 GPAQEEAELGGQNLERD 469
G E+ ELG L+ D
Sbjct: 301 GDQGEKGELGLPGLKGD 317
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 53.9 bits (128), Expect = 4e-07
Identities = 73/263 (27%), Positives = 95/263 (36%), Gaps = 61/263 (23%)
Query: 218 DDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDG-V 276
+ KP D +PG GQK G P + G GLPG ++GDG +
Sbjct: 1165 EKGKPGQDGIPGPAGQK---------------GEPGQPGFGNPGPPGLPGLSGQKGDGGL 1209
Query: 277 PCTPASAPTSGPA--------PGL-GPASWCLEPGSVAQG---SPDPQQTPSRMGREG-E 323
P P + GP PG+ GP PG +G +P PQ P R G G E
Sbjct: 1210 PGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGLPGPE 1269
Query: 324 GTHSSLGCSSL----------GMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRR 373
G G + G+ + L D GP G +P P
Sbjct: 1270 GPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQ-----------GPPGLQG--NPGRPGL 1316
Query: 374 KAADGGHRRALPGCTSLTGET--TGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMG 431
G LPG G +G G AG +G+P L+GP L SG+S++
Sbjct: 1317 NGMKGDP--GLPGVPGFPGMKGPSGVPGSAGPEGEPG---LIGPPGPPGLPGPSGQSIII 1371
Query: 432 AGDSGHASPDTGPCVNQKQEPGP 454
GD+G P K PGP
Sbjct: 1372 KGDAGPPGIPGQP--GLKGLPGP 1392
Score = 49.3 bits (116), Expect = 1e-05
Identities = 86/319 (26%), Positives = 110/319 (34%), Gaps = 72/319 (22%)
Query: 162 GDPTQ-ADSARP-EQSSQSPVQAVPGSGDSQPDDPPD-RGT----GLSASQRASQDHLSE 214
G P Q ++ RP + Q Q +PG D P PP RG G ++ Q +
Sbjct: 239 GPPGQISEQKRPIDVEFQKGDQGLPG--DRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGK 296
Query: 215 QG-----ADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQ----------- 258
+G ++ +P +PGD G +G+K D G P G
Sbjct: 297 RGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIG 356
Query: 259 RTAGAGLPGGPQEEGD-GVPCTPASAPTSGPAPGL-GPASWCLEPGSVAQGSPDPQQTPS 316
GLPG P E+G+ G P GP PGL GP PG+ G P P P
Sbjct: 357 EKGNIGLPGLPGEKGERGFP------GIQGP-PGLPGP------PGAAVMGPPGPPGFPG 403
Query: 317 RMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAA 376
G++G+ G + + L P A + GP G A P S
Sbjct: 404 ERGQKGDE-----GPPGISIPGPPGLDGQP-----GAPGLPGPPGPAGPHIPPSDEICEP 453
Query: 377 DGGHRRALPGCTSLTGET---------------TGESGEAGQDGKPPGDVLVGPTASLAL 421
PG L GE TG SG GQ G P L GP SL
Sbjct: 454 GPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPG---LPGPPGSLGF 510
Query: 422 APGSGESMMGAGDSGHASP 440
GE G +G P
Sbjct: 511 PGQKGEK----GQAGATGP 525
Score = 47.8 bits (112), Expect = 3e-05
Identities = 73/271 (26%), Positives = 94/271 (34%), Gaps = 51/271 (18%)
Query: 244 GEKPDRGAPQEGGAQRTAGAGLPGGPQEEG-DGVPCTPASAPTSGPAPGLGPASWCLEPG 302
G K DRG P G PG P G DG+P +G +GP PG
Sbjct: 772 GPKGDRGFP-----------GPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGL---PG 817
Query: 303 SVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQ 362
QG P P P +G+ G + + + + L+V GP G+
Sbjct: 818 IGVQGPPGPPGIPGPIGQPG----------------LHGIPGEKGDPGPPGLDVPGPPGE 861
Query: 363 -ASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLAL 421
S P +P G LPG +G G GE G G P GP L +
Sbjct: 862 RGSPGIPGAPGPIGPPGS--PGLPGKAGASG-FPGTKGEMGMMGPP------GPPGPLGI 912
Query: 422 APGSGESMMGAGDSGHASPD-TGPC--VNQKQEPG----PAQEEAELGGQNLERDLEGFR 474
SG + D P GP K EPG P + L G E+ G
Sbjct: 913 PGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLP 972
Query: 475 VSPQASVVLEHREIADDPLQEPG--AQQGIP 503
P S ++ + DP Q PG Q G+P
Sbjct: 973 GIPGVSGPKGYQGLPGDPGQ-PGLSGQPGLP 1002
Score = 43.5 bits (101), Expect = 6e-04
Identities = 61/232 (26%), Positives = 79/232 (34%), Gaps = 45/232 (19%)
Query: 227 VPGDGGQKEH--------LPSIDSEGEKPDRGAPQ-EGGAQRTAGAGLPGGPQEEGDGVP 277
+PG+GG K LP + G K D+G P +G R G+ G P G+P
Sbjct: 1274 LPGNGGIKGEKGNPGQPGLPGLP--GLKGDQGPPGLQGNPGRPGLNGMKGDP-----GLP 1326
Query: 278 CTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMV 337
P GP+ G A EPG + G P P P G S ++
Sbjct: 1327 GVPGFPGMKGPSGVPGSAGPEGEPGLI--GPPGPPGLP--------------GPSGQSII 1370
Query: 338 VIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGET--- 394
+ D + + GP G P P D G R LPG G
Sbjct: 1371 IKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGP---PGDPG-RNGLPGFDGAGGRKGDP 1426
Query: 395 --TGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGP 444
G+ G G DG P D L GP PG+ G + H+ P
Sbjct: 1427 GLPGQPGTRGLDGPPGPDGLQGPPG----PPGTSSVAHGFLITRHSQTTDAP 1474
Score = 41.6 bits (96), Expect = 0.002
Identities = 71/265 (26%), Positives = 81/265 (30%), Gaps = 35/265 (13%)
Query: 218 DDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVP 277
D P PG GQ P + P P+ G + GLPG P G G
Sbjct: 1102 DPGLPGLPGTPGAKGQ----PGLPGFPGTPGPPGPK-GISGPPGNPGLPGEPGPVGGGGH 1156
Query: 278 CTPASAPTSGPAPGL----GPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSS 333
P PG GPA EPG G+P P P G++G+G
Sbjct: 1157 PGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDG--------- 1207
Query: 334 LGMVVIADLSTDPTELEERALE----VAGPDGQASAISPASPRRKAADGGH----RRALP 385
G+ I P E V GP G + PA K G R LP
Sbjct: 1208 -GLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGLP 1266
Query: 386 GCTSL-----TGETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGA--GDSG-H 437
G G GE G GQ G P L G L G + GD G
Sbjct: 1267 GPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLP 1326
Query: 438 ASPDTGPCVNQKQEPGPAQEEAELG 462
P PG A E E G
Sbjct: 1327 GVPGFPGMKGPSGVPGSAGPEGEPG 1351
Score = 41.2 bits (95), Expect = 0.003
Identities = 89/334 (26%), Positives = 108/334 (32%), Gaps = 58/334 (17%)
Query: 172 PEQSSQSPVQAVPGSGDSQPDDPPDRGT-GLSASQRASQDHLSEQGADDSKPETDRVPGD 230
P + +Q V G+ QP P +G G + +Q G D +PGD
Sbjct: 628 PGPVGEKGIQGVAGN-PGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVG----LPGD 682
Query: 231 GGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEG-------DGVPCTPASA 283
G LP G+ G P G G GLPG P +G G P TP
Sbjct: 683 PG----LP-----GQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRI 733
Query: 284 PTSGP--APGL-GPASWCLEPGSVAQGSPDPQQTPSRMGREG----------EGTHSSLG 330
GP PG GP EPG G P P P G G G G
Sbjct: 734 GLEGPPGPPGFPGPKG---EPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTG 790
Query: 331 CSSL-GMVVIADLSTDPTELEERALE---VAGPDGQASAISP-ASPRRKAADGGHRRALP 385
L G + P + L V GP G P P G + P
Sbjct: 791 LDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPG--EKGDP 848
Query: 386 GCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGA--GDSGHASPDTG 443
G L + G GE G G P +GP S L +G S G+ G P G
Sbjct: 849 GPPGL--DVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGP-PG 905
Query: 444 PCVNQKQEPGPAQEEAELGGQNLERDLEGFRVSP 477
P PGP G L+ D +G + P
Sbjct: 906 P-------PGPLGIPGRSGVPGLKGD-DGLQGQP 931
Score = 34.3 bits (77), Expect = 0.36
Identities = 74/282 (26%), Positives = 90/282 (31%), Gaps = 74/282 (26%)
Query: 222 PETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGA----GLPGGPQEEGD--- 274
P +PG G L +GEK GA G GA G PG E GD
Sbjct: 493 PGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILT 552
Query: 275 --------------GVPCTPASAPTSGP--APGL-GPASWCLEPGSVA-QGSPDPQQTPS 316
G P P T G PGL GP EPG + +G P P
Sbjct: 553 FPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKG---EPGGITFKGERGPPGNPG 609
Query: 317 RMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALE-VAGPDGQASAISPASPRRKA 375
G G +G G P + E+ ++ VAG GQ
Sbjct: 610 LPGLPGN--IGPMGPPGFG---------PPGPVGEKGIQGVAGNPGQPG----------- 647
Query: 376 ADGGHRRALPGCTSLTGETTGESGEAGQDGKP--------PGDVLVGPTASLALAPGS-G 426
+PG G+T + G+ G G P PGD + L PGS G
Sbjct: 648 --------IPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKG 699
Query: 427 E-SMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELGGQNLE 467
E + G G G P P + PGP G LE
Sbjct: 700 EPGIPGIGLPGPPGPKGFPGI-----PGPPGAPGTPGRIGLE 736
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 53.5 bits (127), Expect = 6e-07
Identities = 116/447 (25%), Positives = 150/447 (33%), Gaps = 95/447 (21%)
Query: 43 PEEPEGKLGPVPSTQQHGEEPGKAVSSSP-----DEETGSPCRLLRQPEKEPAPLPPSQN 97
P+ P G GP G+ K +P D E G+P P P PP
Sbjct: 118 PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTP----GNPGPPGPPGPPGPP 173
Query: 98 SFGRFVPQFAKSRKTVTRKEEMKDEDRGSGAFSLETIAESSAQSPGCQLLVETLGVPLQE 157
G G F+ + ++ G QL V + P+
Sbjct: 174 GLG--------------------------GNFAAQMAGGFDEKAGGAQLGV--MQGPMGP 205
Query: 158 ATELGDPTQADSARPEQSSQSPVQ-AVPG-SGDSQPDDPP-------DRGTGLSASQRAS 208
G P A + P+ +P + PG SG P PP D G +
Sbjct: 206 MGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGE 265
Query: 209 QDHLSEQGADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGG 268
+ QGA P T +PG G + + P +D G K + GAP G G
Sbjct: 266 RGPPGPQGARGF-PGTPGLPGVKGHRGY-PGLD--GAKGEAGAPGVKGES--------GS 313
Query: 269 PQEEGDGVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMG-REGEGTHS 327
P E G P P P G GPA G+ G P P P +G G G
Sbjct: 314 PGENGSPGPMGPRGLP--GERGRTGPAGAAGARGN--DGQPGPAGPPGPVGPAGGPGFPG 369
Query: 328 SLGCSSLGMVVIADLSTDPTELEERALEVA-GPDGQASAISPASPRRKAADGGHRRALPG 386
+ G PT R E A GP G+ +P SP A G PG
Sbjct: 370 APGAKG---------EAGPT--GARGPEGAQGPRGEPG--TPGSPGPAGASGN-----PG 411
Query: 387 CTSLTGE--TTGESGEAGQDG-----KPPGDVLVGPTASLALAPGSGESMMGAGDSGHAS 439
+ G + G G AG G PPG G T L +GE + AG G
Sbjct: 412 TDGIPGAKGSAGAPGIAGAPGFPGPRGPPGP--QGATGPLGPKGQTGEPGI-AGFKGEQG 468
Query: 440 P--DTGPCVNQKQEPGPAQEEAELGGQ 464
P + GP + PGPA EE + G +
Sbjct: 469 PKGEPGP-AGPQGAPGPAGEEGKRGAR 494
Score = 52.8 bits (125), Expect = 1e-06
Identities = 115/438 (26%), Positives = 149/438 (34%), Gaps = 73/438 (16%)
Query: 43 PEEPEGKLGPVPSTQQHGEEPGKAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSFGRF 102
P P+G GP+ Q GE PG A E G P+ EP P P
Sbjct: 439 PPGPQGATGPLGPKGQTGE-PGIAGFKG---EQG--------PKGEPGPAGP-------- 478
Query: 103 VPQFAKSRKTVTRKEEMKDEDRGSGAFSL--ETIAESSAQSPGCQLLVETLGVPLQEATE 160
Q A K + E G G E A + PG L G P
Sbjct: 479 --QGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAP------ 530
Query: 161 LGDPTQADSARPEQSSQSPVQAVPGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGA--D 218
G+ + A P+ ++ P + PG +P P RG Q + GA +
Sbjct: 531 -GERGPSGLAGPKGANGDPGR--PG----EPGLPGARGLTGRPGDAGPQGKVGPSGAPGE 583
Query: 219 DSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGA-GLPGGPQEEGDGVP 277
D +P PG G + + G K G P + G + GA GL G P ++G+
Sbjct: 584 DGRPGP---PGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGE--- 637
Query: 278 CTPASAPTSGPAPGLGPASWCLEPG-SVAQGSPDPQQTPSRMGREGE-GTHSSLGCSSLG 335
T A+ P GPA G PG S QG P P P G+ G+ G G G
Sbjct: 638 -TGAAGPP-GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAP--G 693
Query: 336 MVVIADLSTDPTELEERALE----------VAGPDGQASAISPASPRRKAADGGHR---- 381
+V P E + G DG A PA P G +
Sbjct: 694 LVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPG 753
Query: 382 -RALPGCTSLTGET--TGESGEAGQDGKPPGDVLVGPTASLALAPGSGE--SMMGAGDSG 436
R G G+ GE G G GK G L GP A +GE + G +G
Sbjct: 754 ERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAG 813
Query: 437 HASPDTGPCVNQKQEPGP 454
A P ++ E GP
Sbjct: 814 SAGARGAP--GERGETGP 829
Score = 50.4 bits (119), Expect = 5e-06
Identities = 138/581 (23%), Positives = 175/581 (30%), Gaps = 132/581 (22%)
Query: 16 PPKPLKNPRLGDFYGDPQSSMLGCLHHPEEPEGKLGPVPSTQQHGE--EPGKAVSSSPDE 73
PP P P F G+P + P P G GP GE +PGKA P
Sbjct: 211 PPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPG 270
Query: 74 ETGSPCRLLRQPEKEPAPLPPSQNSFGRFVPQFAKSRKTVTRKEEMKDEDRGSGAFSLET 133
G+ P + G K + + K E G+ E+
Sbjct: 271 PQGA------------RGFPGTPGLPG------VKGHRGYPGLDGAKGE-AGAPGVKGES 311
Query: 134 IAESSAQSPGCQLLVETLGVPLQEATELGDPTQADSARPEQSSQSPV----QAVPGSGDS 189
+ SPG + G+P + P A AR P P G
Sbjct: 312 GSPGENGSPGP---MGPRGLPGERGRT--GPAGAAGARGNDGQPGPAGPPGPVGPAGGPG 366
Query: 190 QPDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDR 249
P P +G R + +G +P T PG G + + G K
Sbjct: 367 FPGAPGAKGEAGPTGARGPEGAQGPRG----EPGTPGSPGPAGASGNPGTDGIPGAKGSA 422
Query: 250 GAPQEGGAQRTAGAGLPGGPQ-------------------------EEGDGVPCTPASAP 284
GAP GA G P GPQ +G+ P P AP
Sbjct: 423 GAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAP 482
Query: 285 TSGPAPGLGPASWCLEPGSVA-------QGSPDPQQTPSRMGREG-EGTHSSLGCSSLGM 336
GPA G EPG V +G+P + P + G G +G G S G+
Sbjct: 483 --GPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPS--GL 538
Query: 337 VVIADLSTDPTELEERALE----VAGPDGQASAISPASPRRKAADGGH--------RRAL 384
+ DP E L + G G A P + G R
Sbjct: 539 AGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQ 598
Query: 385 PGCTSLTGE--TTGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASP-- 440
PG G GE G+AG+ G P L G PG AG G A P
Sbjct: 599 PGVMGFPGPKGANGEPGKAGEKGLPGAPGLRG-------LPGKDGETGAAGPPGPAGPAG 651
Query: 441 ------DTGPCVNQ--KQEPGPAQEEAELGGQNL--------------ERDLEGFRVSPQ 478
GP Q PGP E + G Q + ER G R SP
Sbjct: 652 ERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPG 711
Query: 479 ASVVLEHREI-----------ADDPLQEPGAQ-----QGIP 503
A + R + A P PGAQ QG+P
Sbjct: 712 AQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMP 752
Score = 48.9 bits (115), Expect = 1e-05
Identities = 85/339 (25%), Positives = 109/339 (32%), Gaps = 78/339 (23%)
Query: 168 DSARPEQSSQSPVQAVPGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGADD-----SKP 222
D R P +G+ PP G SA R + E G P
Sbjct: 782 DGGRGLTGPIGPPGPAGANGEKGEVGPP--GPAGSAGARGAPGERGETGPPGPAGFAGPP 839
Query: 223 ETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQ-----EEGDGVP 277
D PG G++ G+K D GAP G Q +GA P GP + G
Sbjct: 840 GADGQPGAKGEQ------GEAGQKGDAGAP---GPQGPSGAPGPQGPTGVTGPKGARGAQ 890
Query: 278 CTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREG-EGTHSSLGCSS-LG 335
P + G A +GP PGS G+P P P G++G +G G G
Sbjct: 891 GPPGATGFPGAAGRVGP------PGS--NGNPGPPGPPGPSGKDGPKGARGDSGPPGRAG 942
Query: 336 MVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGG--------HRRALPGC 387
+ + P E E G DG + A P P+ A G R PG
Sbjct: 943 EPGLQGPAGPPGEKGE-----PGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGL 997
Query: 388 TSLTGET-----------------------TGESGEAGQDGKPPGDVLVGPTASLALAPG 424
+GE TG +GE G++G P D GP PG
Sbjct: 998 PGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGAD---GP-------PG 1047
Query: 425 SGESMMGAGDSGHASPDTGP-CVNQKQEPGPAQEEAELG 462
+ GD G P PGPA + G
Sbjct: 1048 RDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQG 1086
Score = 31.2 bits (69), Expect = 3.0
Identities = 36/109 (33%), Positives = 38/109 (34%), Gaps = 25/109 (22%)
Query: 215 QGADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGD 274
QG K E PG+ G K H RG T GLPG P GD
Sbjct: 1112 QGPRGDKGEAGE-PGERGLKGH------------RGF--------TGLQGLPGPPGPSGD 1150
Query: 275 GVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGE 323
PA SGP GP + G A G P P P GR GE
Sbjct: 1151 QGASGPAG--PSGPRGPPGPVGPSGKDG--ANGIPGPIGPPGPRGRSGE 1195
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 53.5 bits (127), Expect = 6e-07
Identities = 116/447 (25%), Positives = 150/447 (33%), Gaps = 95/447 (21%)
Query: 43 PEEPEGKLGPVPSTQQHGEEPGKAVSSSP-----DEETGSPCRLLRQPEKEPAPLPPSQN 97
P+ P G GP G+ K +P D E G+P P P PP
Sbjct: 49 PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTP----GNPGPPGPPGPPGPP 104
Query: 98 SFGRFVPQFAKSRKTVTRKEEMKDEDRGSGAFSLETIAESSAQSPGCQLLVETLGVPLQE 157
G G F+ + ++ G QL V + P+
Sbjct: 105 GLG--------------------------GNFAAQMAGGFDEKAGGAQLGV--MQGPMGP 136
Query: 158 ATELGDPTQADSARPEQSSQSPVQ-AVPG-SGDSQPDDPP-------DRGTGLSASQRAS 208
G P A + P+ +P + PG SG P PP D G +
Sbjct: 137 MGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGE 196
Query: 209 QDHLSEQGADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGG 268
+ QGA P T +PG G + + P +D G K + GAP G G
Sbjct: 197 RGPPGPQGARGF-PGTPGLPGVKGHRGY-PGLD--GAKGEAGAPGVKGES--------GS 244
Query: 269 PQEEGDGVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMG-REGEGTHS 327
P E G P P P G GPA G+ G P P P +G G G
Sbjct: 245 PGENGSPGPMGPRGLP--GERGRTGPAGAAGARGN--DGQPGPAGPPGPVGPAGGPGFPG 300
Query: 328 SLGCSSLGMVVIADLSTDPTELEERALEVA-GPDGQASAISPASPRRKAADGGHRRALPG 386
+ G PT R E A GP G+ +P SP A G PG
Sbjct: 301 APGAKG---------EAGPT--GARGPEGAQGPRGEPG--TPGSPGPAGASGN-----PG 342
Query: 387 CTSLTGE--TTGESGEAGQDG-----KPPGDVLVGPTASLALAPGSGESMMGAGDSGHAS 439
+ G + G G AG G PPG G T L +GE + AG G
Sbjct: 343 TDGIPGAKGSAGAPGIAGAPGFPGPRGPPGP--QGATGPLGPKGQTGEPGI-AGFKGEQG 399
Query: 440 P--DTGPCVNQKQEPGPAQEEAELGGQ 464
P + GP + PGPA EE + G +
Sbjct: 400 PKGEPGP-AGPQGAPGPAGEEGKRGAR 425
Score = 52.8 bits (125), Expect = 1e-06
Identities = 115/438 (26%), Positives = 149/438 (34%), Gaps = 73/438 (16%)
Query: 43 PEEPEGKLGPVPSTQQHGEEPGKAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSFGRF 102
P P+G GP+ Q GE PG A E G P+ EP P P
Sbjct: 370 PPGPQGATGPLGPKGQTGE-PGIAGFKG---EQG--------PKGEPGPAGP-------- 409
Query: 103 VPQFAKSRKTVTRKEEMKDEDRGSGAFSL--ETIAESSAQSPGCQLLVETLGVPLQEATE 160
Q A K + E G G E A + PG L G P
Sbjct: 410 --QGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAP------ 461
Query: 161 LGDPTQADSARPEQSSQSPVQAVPGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGA--D 218
G+ + A P+ ++ P + PG +P P RG Q + GA +
Sbjct: 462 -GERGPSGLAGPKGANGDPGR--PG----EPGLPGARGLTGRPGDAGPQGKVGPSGAPGE 514
Query: 219 DSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGA-GLPGGPQEEGDGVP 277
D +P PG G + + G K G P + G + GA GL G P ++G+
Sbjct: 515 DGRPGP---PGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGE--- 568
Query: 278 CTPASAPTSGPAPGLGPASWCLEPG-SVAQGSPDPQQTPSRMGREGE-GTHSSLGCSSLG 335
T A+ P GPA G PG S QG P P P G+ G+ G G G
Sbjct: 569 -TGAAGPP-GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAP--G 624
Query: 336 MVVIADLSTDPTELEERALE----------VAGPDGQASAISPASPRRKAADGGHR---- 381
+V P E + G DG A PA P G +
Sbjct: 625 LVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPG 684
Query: 382 -RALPGCTSLTGET--TGESGEAGQDGKPPGDVLVGPTASLALAPGSGE--SMMGAGDSG 436
R G G+ GE G G GK G L GP A +GE + G +G
Sbjct: 685 ERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAG 744
Query: 437 HASPDTGPCVNQKQEPGP 454
A P ++ E GP
Sbjct: 745 SAGARGAP--GERGETGP 760
Score = 50.4 bits (119), Expect = 5e-06
Identities = 138/581 (23%), Positives = 175/581 (30%), Gaps = 132/581 (22%)
Query: 16 PPKPLKNPRLGDFYGDPQSSMLGCLHHPEEPEGKLGPVPSTQQHGE--EPGKAVSSSPDE 73
PP P P F G+P + P P G GP GE +PGKA P
Sbjct: 142 PPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPG 201
Query: 74 ETGSPCRLLRQPEKEPAPLPPSQNSFGRFVPQFAKSRKTVTRKEEMKDEDRGSGAFSLET 133
G+ P + G K + + K E G+ E+
Sbjct: 202 PQGA------------RGFPGTPGLPG------VKGHRGYPGLDGAKGE-AGAPGVKGES 242
Query: 134 IAESSAQSPGCQLLVETLGVPLQEATELGDPTQADSARPEQSSQSPV----QAVPGSGDS 189
+ SPG + G+P + P A AR P P G
Sbjct: 243 GSPGENGSPGP---MGPRGLPGERGRT--GPAGAAGARGNDGQPGPAGPPGPVGPAGGPG 297
Query: 190 QPDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDR 249
P P +G R + +G +P T PG G + + G K
Sbjct: 298 FPGAPGAKGEAGPTGARGPEGAQGPRG----EPGTPGSPGPAGASGNPGTDGIPGAKGSA 353
Query: 250 GAPQEGGAQRTAGAGLPGGPQ-------------------------EEGDGVPCTPASAP 284
GAP GA G P GPQ +G+ P P AP
Sbjct: 354 GAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAP 413
Query: 285 TSGPAPGLGPASWCLEPGSVA-------QGSPDPQQTPSRMGREG-EGTHSSLGCSSLGM 336
GPA G EPG V +G+P + P + G G +G G S G+
Sbjct: 414 --GPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPS--GL 469
Query: 337 VVIADLSTDPTELEERALE----VAGPDGQASAISPASPRRKAADGGH--------RRAL 384
+ DP E L + G G A P + G R
Sbjct: 470 AGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQ 529
Query: 385 PGCTSLTGE--TTGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASP-- 440
PG G GE G+AG+ G P L G PG AG G A P
Sbjct: 530 PGVMGFPGPKGANGEPGKAGEKGLPGAPGLRG-------LPGKDGETGAAGPPGPAGPAG 582
Query: 441 ------DTGPCVNQ--KQEPGPAQEEAELGGQNL--------------ERDLEGFRVSPQ 478
GP Q PGP E + G Q + ER G R SP
Sbjct: 583 ERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPG 642
Query: 479 ASVVLEHREI-----------ADDPLQEPGAQ-----QGIP 503
A + R + A P PGAQ QG+P
Sbjct: 643 AQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMP 683
Score = 48.9 bits (115), Expect = 1e-05
Identities = 85/339 (25%), Positives = 109/339 (32%), Gaps = 78/339 (23%)
Query: 168 DSARPEQSSQSPVQAVPGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGADD-----SKP 222
D R P +G+ PP G SA R + E G P
Sbjct: 713 DGGRGLTGPIGPPGPAGANGEKGEVGPP--GPAGSAGARGAPGERGETGPPGPAGFAGPP 770
Query: 223 ETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQ-----EEGDGVP 277
D PG G++ G+K D GAP G Q +GA P GP + G
Sbjct: 771 GADGQPGAKGEQ------GEAGQKGDAGAP---GPQGPSGAPGPQGPTGVTGPKGARGAQ 821
Query: 278 CTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREG-EGTHSSLGCSS-LG 335
P + G A +GP PGS G+P P P G++G +G G G
Sbjct: 822 GPPGATGFPGAAGRVGP------PGS--NGNPGPPGPPGPSGKDGPKGARGDSGPPGRAG 873
Query: 336 MVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGG--------HRRALPGC 387
+ + P E E G DG + A P P+ A G R PG
Sbjct: 874 EPGLQGPAGPPGEKGE-----PGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGL 928
Query: 388 TSLTGET-----------------------TGESGEAGQDGKPPGDVLVGPTASLALAPG 424
+GE TG +GE G++G P D GP PG
Sbjct: 929 PGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGAD---GP-------PG 978
Query: 425 SGESMMGAGDSGHASPDTGP-CVNQKQEPGPAQEEAELG 462
+ GD G P PGPA + G
Sbjct: 979 RDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQG 1017
Score = 31.2 bits (69), Expect = 3.0
Identities = 36/109 (33%), Positives = 38/109 (34%), Gaps = 25/109 (22%)
Query: 215 QGADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGD 274
QG K E PG+ G K H RG T GLPG P GD
Sbjct: 1043 QGPRGDKGEAGE-PGERGLKGH------------RGF--------TGLQGLPGPPGPSGD 1081
Query: 275 GVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGE 323
PA SGP GP + G A G P P P GR GE
Sbjct: 1082 QGASGPAG--PSGPRGPPGPVGPSGKDG--ANGIPGPIGPPGPRGRSGE 1126
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 53.5 bits (127), Expect = 6e-07
Identities = 73/266 (27%), Positives = 96/266 (36%), Gaps = 64/266 (24%)
Query: 218 DDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDG-V 276
+ KP D +PG GQK G P + G GLPG ++GDG +
Sbjct: 1165 EKGKPGQDGIPGPAGQK---------------GEPGQPGFGNPGPPGLPGLSGQKGDGGL 1209
Query: 277 PCTPASAPTSGPA--------PGL-GPASWCLEPGSVAQG---SPDPQQTPSRMGREG-- 322
P P + GP PG+ GP PG +G +P PQ P R G +G
Sbjct: 1210 PGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGFQGLP 1269
Query: 323 --EGTHSSLGCSSL----------GMVVIADLSTDPTELEERALEVAGPDGQASAISPAS 370
EG G + G+ + L D GP G +P
Sbjct: 1270 GPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQ-----------GPPGLQG--NPGR 1316
Query: 371 PRRKAADGGHRRALPGCTSLTGET--TGESGEAGQDGKPPGDVLVGPTASLALAPGSGES 428
P G LPG G +G G AG +G+P L+GP L SG+S
Sbjct: 1317 PGLNGMKGDP--GLPGVPGFPGMKGPSGVPGSAGPEGEPG---LIGPPGPPGLPGPSGQS 1371
Query: 429 MMGAGDSGHASPDTGPCVNQKQEPGP 454
++ GD+G P K PGP
Sbjct: 1372 IIIKGDAGPPGIPGQP--GLKGLPGP 1395
Score = 49.3 bits (116), Expect = 1e-05
Identities = 86/319 (26%), Positives = 110/319 (34%), Gaps = 72/319 (22%)
Query: 162 GDPTQ-ADSARP-EQSSQSPVQAVPGSGDSQPDDPPD-RGT----GLSASQRASQDHLSE 214
G P Q ++ RP + Q Q +PG D P PP RG G ++ Q +
Sbjct: 239 GPPGQISEQKRPIDVEFQKGDQGLPG--DRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGK 296
Query: 215 QG-----ADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQ----------- 258
+G ++ +P +PGD G +G+K D G P G
Sbjct: 297 RGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIG 356
Query: 259 RTAGAGLPGGPQEEGD-GVPCTPASAPTSGPAPGL-GPASWCLEPGSVAQGSPDPQQTPS 316
GLPG P E+G+ G P GP PGL GP PG+ G P P P
Sbjct: 357 EKGNIGLPGLPGEKGERGFP------GIQGP-PGLPGP------PGAAVMGPPGPPGFPG 403
Query: 317 RMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAA 376
G++G+ G + + L P A + GP G A P S
Sbjct: 404 ERGQKGDE-----GPPGISIPGPPGLDGQP-----GAPGLPGPPGPAGPHIPPSDEICEP 453
Query: 377 DGGHRRALPGCTSLTGET---------------TGESGEAGQDGKPPGDVLVGPTASLAL 421
PG L GE TG SG GQ G P L GP SL
Sbjct: 454 GPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPG---LPGPPGSLGF 510
Query: 422 APGSGESMMGAGDSGHASP 440
GE G +G P
Sbjct: 511 PGQKGEK----GQAGATGP 525
Score = 47.8 bits (112), Expect = 3e-05
Identities = 73/271 (26%), Positives = 94/271 (34%), Gaps = 51/271 (18%)
Query: 244 GEKPDRGAPQEGGAQRTAGAGLPGGPQEEG-DGVPCTPASAPTSGPAPGLGPASWCLEPG 302
G K DRG P G PG P G DG+P +G +GP PG
Sbjct: 772 GPKGDRGFP-----------GPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGL---PG 817
Query: 303 SVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQ 362
QG P P P +G+ G + + + + L+V GP G+
Sbjct: 818 IGVQGPPGPPGIPGPIGQPG----------------LHGIPGEKGDPGPPGLDVPGPPGE 861
Query: 363 -ASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLAL 421
S P +P G LPG +G G GE G G P GP L +
Sbjct: 862 RGSPGIPGAPGPIGPPGS--PGLPGKAGASG-FPGTKGEMGMMGPP------GPPGPLGI 912
Query: 422 APGSGESMMGAGDSGHASPD-TGPC--VNQKQEPG----PAQEEAELGGQNLERDLEGFR 474
SG + D P GP K EPG P + L G E+ G
Sbjct: 913 PGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLP 972
Query: 475 VSPQASVVLEHREIADDPLQEPG--AQQGIP 503
P S ++ + DP Q PG Q G+P
Sbjct: 973 GIPGVSGPKGYQGLPGDPGQ-PGLSGQPGLP 1002
Score = 43.5 bits (101), Expect = 6e-04
Identities = 61/232 (26%), Positives = 79/232 (34%), Gaps = 45/232 (19%)
Query: 227 VPGDGGQKEH--------LPSIDSEGEKPDRGAPQ-EGGAQRTAGAGLPGGPQEEGDGVP 277
+PG+GG K LP + G K D+G P +G R G+ G P G+P
Sbjct: 1277 LPGNGGIKGEKGNPGQPGLPGLP--GLKGDQGPPGLQGNPGRPGLNGMKGDP-----GLP 1329
Query: 278 CTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMV 337
P GP+ G A EPG + G P P P G S ++
Sbjct: 1330 GVPGFPGMKGPSGVPGSAGPEGEPGLI--GPPGPPGLP--------------GPSGQSII 1373
Query: 338 VIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGET--- 394
+ D + + GP G P P D G R LPG G
Sbjct: 1374 IKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGP---PGDPG-RNGLPGFDGAGGRKGDP 1429
Query: 395 --TGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGP 444
G+ G G DG P D L GP PG+ G + H+ P
Sbjct: 1430 GLPGQPGTRGLDGPPGPDGLQGPPG----PPGTSSVAHGFLITRHSQTTDAP 1477
Score = 41.2 bits (95), Expect = 0.003
Identities = 89/334 (26%), Positives = 108/334 (32%), Gaps = 58/334 (17%)
Query: 172 PEQSSQSPVQAVPGSGDSQPDDPPDRGT-GLSASQRASQDHLSEQGADDSKPETDRVPGD 230
P + +Q V G+ QP P +G G + +Q G D +PGD
Sbjct: 628 PGPVGEKGIQGVAGN-PGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVG----LPGD 682
Query: 231 GGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEG-------DGVPCTPASA 283
G LP G+ G P G G GLPG P +G G P TP
Sbjct: 683 PG----LP-----GQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRI 733
Query: 284 PTSGP--APGL-GPASWCLEPGSVAQGSPDPQQTPSRMGREG----------EGTHSSLG 330
GP PG GP EPG G P P P G G G G
Sbjct: 734 GLEGPPGPPGFPGPKG---EPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTG 790
Query: 331 CSSL-GMVVIADLSTDPTELEERALE---VAGPDGQASAISP-ASPRRKAADGGHRRALP 385
L G + P + L V GP G P P G + P
Sbjct: 791 LDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPG--EKGDP 848
Query: 386 GCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGA--GDSGHASPDTG 443
G L + G GE G G P +GP S L +G S G+ G P G
Sbjct: 849 GPPGL--DVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGP-PG 905
Query: 444 PCVNQKQEPGPAQEEAELGGQNLERDLEGFRVSP 477
P PGP G L+ D +G + P
Sbjct: 906 P-------PGPLGIPGRSGVPGLKGD-DGLQGQP 931
Score = 38.9 bits (89), Expect = 0.015
Identities = 70/268 (26%), Positives = 81/268 (30%), Gaps = 38/268 (14%)
Query: 218 DDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVP 277
D P PG GQ P + P P+ G + GLPG P G G
Sbjct: 1102 DPGLPGLPGTPGAKGQ----PGLPGFPGTPGPPGPK-GISGPPGNPGLPGEPGPVGGGGH 1156
Query: 278 CTPASAPTSGPAPGL----GPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSS 333
P PG GPA EPG G+P P P G++G+G
Sbjct: 1157 PGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDG--------- 1207
Query: 334 LGMVVIADLSTDPTELEERALE----VAGPDGQASAISPASPRRKAADGGHR-------R 382
G+ I P E V GP G + PA K G +
Sbjct: 1208 -GLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGFQ 1266
Query: 383 ALPGCTSL-----TGETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGA--GDS 435
LPG G GE G GQ G P L G L G + GD
Sbjct: 1267 GLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDP 1326
Query: 436 G-HASPDTGPCVNQKQEPGPAQEEAELG 462
G P PG A E E G
Sbjct: 1327 GLPGVPGFPGMKGPSGVPGSAGPEGEPG 1354
Score = 34.3 bits (77), Expect = 0.36
Identities = 74/282 (26%), Positives = 90/282 (31%), Gaps = 74/282 (26%)
Query: 222 PETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGA----GLPGGPQEEGD--- 274
P +PG G L +GEK GA G GA G PG E GD
Sbjct: 493 PGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILT 552
Query: 275 --------------GVPCTPASAPTSGP--APGL-GPASWCLEPGSVA-QGSPDPQQTPS 316
G P P T G PGL GP EPG + +G P P
Sbjct: 553 FPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKG---EPGGITFKGERGPPGNPG 609
Query: 317 RMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALE-VAGPDGQASAISPASPRRKA 375
G G +G G P + E+ ++ VAG GQ
Sbjct: 610 LPGLPGN--IGPMGPPGFG---------PPGPVGEKGIQGVAGNPGQPG----------- 647
Query: 376 ADGGHRRALPGCTSLTGETTGESGEAGQDGKP--------PGDVLVGPTASLALAPGS-G 426
+PG G+T + G+ G G P PGD + L PGS G
Sbjct: 648 --------IPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKG 699
Query: 427 E-SMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELGGQNLE 467
E + G G G P P + PGP G LE
Sbjct: 700 EPGIPGIGLPGPPGPKGFPGI-----PGPPGAPGTPGRIGLE 736
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 52.8 bits (125), Expect = 1e-06
Identities = 108/451 (23%), Positives = 146/451 (32%), Gaps = 60/451 (13%)
Query: 49 KLGPVPSTQQHGEEPGKAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSFGRFVPQFAK 108
K GP PS+ + S E SP L +P PLPP G PQF
Sbjct: 3478 KAGPKPSSLSMAHSRVRPPMRSQASEEESPVSPLGRPRPAGGPLPPG----GDTCPQFCS 3533
Query: 109 SRKTVTRKEEMKDEDRGSGAFSLETIAESSAQSPGCQLLVETLGVPLQEATELGD-PTQA 167
S +E +KD R E + LG QE T+ D P A
Sbjct: 3534 SHSMPDVQEHVKDGPRAHAYKREEGYILDDSHCVVSDSEAYHLG---QEETDWFDKPRDA 3590
Query: 168 DSARPEQ------SSQSPVQAVPGSGDSQPDDPPDRG-----TGLSASQRASQDHLSEQG 216
S R SS S + D+PP+ G G ++++H
Sbjct: 3591 RSDRFRHHGGHAVSSSSQKRGPARHSYHDYDEPPEEGLWPHDEGGPGRHASAKEHRHGDH 3650
Query: 217 ADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGV 276
S T PG K H + G R Q A G PG P
Sbjct: 3651 GRHSGRHTGEEPGRRAAKPHARDL---GRHEARPHSQPSSAPAMPKKGQPGYPSSAEYSQ 3707
Query: 277 PCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGRE-GEGTHSSLGCSSLG 335
P +SA G P ++ Q +PQ P GR+ G S SS
Sbjct: 3708 PSRASSAYHHASDSKKGSRQAHSGPAAL-QSKAEPQAQPQLQGRQAAPGPQQSQSPSSRQ 3766
Query: 336 MVVIADLSTDPTELEERALEVAGPD---GQASAISPASPRRK----AADGGHRRALPGCT 388
+ A T+ +++ L + P QA + P + AA + PG +
Sbjct: 3767 IPSGAASRQPQTQQQQQGLGLQPPQQALTQARLQQQSQPTTRGSAPAASQPAGKPQPGPS 3826
Query: 389 SLTG----------ETTGESG--EAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSG 436
+ TG +T G G +A Q G+ P APG G + + AG
Sbjct: 3827 TATGPQPAGPPRAEQTNGSKGTAKAPQQGRAP---------QAQPAPGPGPAGVKAGARP 3877
Query: 437 HASPDT--------GPCVNQKQEPGPAQEEA 459
+P G V K PG A E+A
Sbjct: 3878 GGTPGAPAGQPGADGESVFSKILPGGAAEQA 3908
Score = 37.4 bits (85), Expect = 0.043
Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 244 GEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWCLEP-- 301
G P G P A G LP VP P P GP PG G S L+P
Sbjct: 28 GPGPGAGKPPSAPA---GGGQLPAAGAARSTAVPPVPGPGPGPGPGPGPGSTSRRLDPKE 84
Query: 302 --GSVAQGSPDPQQ 313
G+ SP P+Q
Sbjct: 85 PLGNQRAASPTPKQ 98
Score = 32.3 bits (72), Expect = 1.4
Identities = 55/205 (26%), Positives = 72/205 (35%), Gaps = 35/205 (17%)
Query: 118 EMKDEDRGSGAFSLETIAESSAQSPGCQLLVETLGVPLQE-------------------A 158
+M R L + A S A SP Q LG P QE A
Sbjct: 229 DMTTAPRSKSQQQLHSPALSPAHSPAKQ----PLGKPDQERSRGPGGPQPGSRQAETARA 284
Query: 159 TELGDPTQADSARPEQSSQSPVQAVPGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGAD 218
T + P QA +A PE SP P + PP G + S A L GA
Sbjct: 285 TSVPGPAQA-AAPPEVGRVSPQPPQPTKPSTAEPRPP-AGEAPAKSATAVPAGL---GAT 339
Query: 219 DSKPE--TDRVPGDGG----QKEHLPSIDSEGEKPDRGAPQEGGAQRTAG-AGLPGGPQE 271
+ E T ++ G G Q L S+ E + + AP +G + A GP+
Sbjct: 340 EQTQEGLTGKLFGLGASLLTQASTLMSVQPEADTQGQPAPSKGTPKIVFNDASKEAGPKP 399
Query: 272 EGDGVPCTPASAPTSGPAPGLGPAS 296
G G PA + P +GP S
Sbjct: 400 LGSGPGPGPAPGAKTEPGARMGPGS 424
Score = 30.8 bits (68), Expect = 4.0
Identities = 48/221 (21%), Positives = 73/221 (33%), Gaps = 43/221 (19%)
Query: 49 KLGPVPSTQQ------HGEEPGKAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSFGRF 102
K P+PS EP K SS +++T P + EP P PP + +
Sbjct: 578 KASPLPSKASPQAKPLRASEPSKTPSSVQEKKTRVPTKA------EPMPKPPPETT---P 628
Query: 103 VPQFAKSRKTVTRKE-------EMKDEDRGSGAFSL-------------ETIAESSAQSP 142
P K + V R E + + +G A L ++++++ S
Sbjct: 629 TPATPKVKSGVRRAEPATPVVKAVPEAPKGGEAEDLVGKPYSQDASRSPQSLSDTGYSSD 688
Query: 143 G-CQLLVETLGVPLQEATELGD-------PTQADSARPEQSSQSPVQAVPGSGDSQPDDP 194
G E GV QE +L P SS P+ G S+ P
Sbjct: 689 GISSSQSEITGVVQQEVEQLDSAGVTGPHPPSPSEIHKVGSSMRPLLQAQGLAPSERSKP 748
Query: 195 PDRGTGLSASQRASQDHLSEQGADDSKPETDRVPGDGGQKE 235
GTG QR ++ + D + D + D E
Sbjct: 749 LSSGTGEEQKQRPHSLSITPEAFDSDEELEDILEEDEDSAE 789
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 52.8 bits (125), Expect = 1e-06
Identities = 74/258 (28%), Positives = 96/258 (37%), Gaps = 45/258 (17%)
Query: 218 DDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDG-V 276
+ KP D +PG GQK G P + G GLPG ++GDG +
Sbjct: 1165 EKGKPGQDGIPGPAGQK---------------GEPGQPGFGNPGPPGLPGLSGQKGDGGL 1209
Query: 277 PCTPASAPTSGPA--------PGL-GPASWCLEPGSVAQG---SPDPQQTPSRMGREG-E 323
P P + GP PG+ GP PG +G +P PQ P R G G +
Sbjct: 1210 PGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGPTGFQ 1269
Query: 324 GTHSSLGCSSL-GMVVIADLSTDPTELEERALEVA----GPDGQASAISPASPRRKAADG 378
G G L G I +P + L GP G +P P G
Sbjct: 1270 GLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQG--NPGRPGLNGMKG 1327
Query: 379 GHRRALPGCTSLTGET--TGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSG 436
LPG G +G G AG +G+P L+GP L SG+S++ GD+G
Sbjct: 1328 DP--GLPGVPGFPGMKGPSGVPGSAGPEGEPG---LIGPPGPPGLPGPSGQSIIIKGDAG 1382
Query: 437 HASPDTGPCVNQKQEPGP 454
P K PGP
Sbjct: 1383 PPGIPGQP--GLKGLPGP 1398
Score = 49.3 bits (116), Expect = 1e-05
Identities = 86/319 (26%), Positives = 110/319 (34%), Gaps = 72/319 (22%)
Query: 162 GDPTQ-ADSARP-EQSSQSPVQAVPGSGDSQPDDPPD-RGT----GLSASQRASQDHLSE 214
G P Q ++ RP + Q Q +PG D P PP RG G ++ Q +
Sbjct: 239 GPPGQISEQKRPIDVEFQKGDQGLPG--DRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGK 296
Query: 215 QG-----ADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQ----------- 258
+G ++ +P +PGD G +G+K D G P G
Sbjct: 297 RGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIG 356
Query: 259 RTAGAGLPGGPQEEGD-GVPCTPASAPTSGPAPGL-GPASWCLEPGSVAQGSPDPQQTPS 316
GLPG P E+G+ G P GP PGL GP PG+ G P P P
Sbjct: 357 EKGNIGLPGLPGEKGERGFP------GIQGP-PGLPGP------PGAAVMGPPGPPGFPG 403
Query: 317 RMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAA 376
G++G+ G + + L P A + GP G A P S
Sbjct: 404 ERGQKGDE-----GPPGISIPGPPGLDGQP-----GAPGLPGPPGPAGPHIPPSDEICEP 453
Query: 377 DGGHRRALPGCTSLTGET---------------TGESGEAGQDGKPPGDVLVGPTASLAL 421
PG L GE TG SG GQ G P L GP SL
Sbjct: 454 GPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPG---LPGPPGSLGF 510
Query: 422 APGSGESMMGAGDSGHASP 440
GE G +G P
Sbjct: 511 PGQKGEK----GQAGATGP 525
Score = 47.8 bits (112), Expect = 3e-05
Identities = 73/271 (26%), Positives = 94/271 (34%), Gaps = 51/271 (18%)
Query: 244 GEKPDRGAPQEGGAQRTAGAGLPGGPQEEG-DGVPCTPASAPTSGPAPGLGPASWCLEPG 302
G K DRG P G PG P G DG+P +G +GP PG
Sbjct: 772 GPKGDRGFP-----------GPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGL---PG 817
Query: 303 SVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQ 362
QG P P P +G+ G + + + + L+V GP G+
Sbjct: 818 IGVQGPPGPPGIPGPIGQPG----------------LHGIPGEKGDPGPPGLDVPGPPGE 861
Query: 363 -ASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLAL 421
S P +P G LPG +G G GE G G P GP L +
Sbjct: 862 RGSPGIPGAPGPIGPPGS--PGLPGKAGASG-FPGTKGEMGMMGPP------GPPGPLGI 912
Query: 422 APGSGESMMGAGDSGHASPD-TGPC--VNQKQEPG----PAQEEAELGGQNLERDLEGFR 474
SG + D P GP K EPG P + L G E+ G
Sbjct: 913 PGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLP 972
Query: 475 VSPQASVVLEHREIADDPLQEPG--AQQGIP 503
P S ++ + DP Q PG Q G+P
Sbjct: 973 GIPGVSGPKGYQGLPGDPGQ-PGLSGQPGLP 1002
Score = 43.5 bits (101), Expect = 6e-04
Identities = 61/232 (26%), Positives = 79/232 (34%), Gaps = 45/232 (19%)
Query: 227 VPGDGGQKEH--------LPSIDSEGEKPDRGAPQ-EGGAQRTAGAGLPGGPQEEGDGVP 277
+PG+GG K LP + G K D+G P +G R G+ G P G+P
Sbjct: 1280 LPGNGGIKGEKGNPGQPGLPGLP--GLKGDQGPPGLQGNPGRPGLNGMKGDP-----GLP 1332
Query: 278 CTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMV 337
P GP+ G A EPG + G P P P G S ++
Sbjct: 1333 GVPGFPGMKGPSGVPGSAGPEGEPGLI--GPPGPPGLP--------------GPSGQSII 1376
Query: 338 VIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGET--- 394
+ D + + GP G P P D G R LPG G
Sbjct: 1377 IKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGP---PGDPG-RNGLPGFDGAGGRKGDP 1432
Query: 395 --TGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGP 444
G+ G G DG P D L GP PG+ G + H+ P
Sbjct: 1433 GLPGQPGTRGLDGPPGPDGLQGPPG----PPGTSSVAHGFLITRHSQTTDAP 1480
Score = 41.2 bits (95), Expect = 0.003
Identities = 89/334 (26%), Positives = 108/334 (32%), Gaps = 58/334 (17%)
Query: 172 PEQSSQSPVQAVPGSGDSQPDDPPDRGT-GLSASQRASQDHLSEQGADDSKPETDRVPGD 230
P + +Q V G+ QP P +G G + +Q G D +PGD
Sbjct: 628 PGPVGEKGIQGVAGN-PGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVG----LPGD 682
Query: 231 GGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEG-------DGVPCTPASA 283
G LP G+ G P G G GLPG P +G G P TP
Sbjct: 683 PG----LP-----GQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRI 733
Query: 284 PTSGP--APGL-GPASWCLEPGSVAQGSPDPQQTPSRMGREG----------EGTHSSLG 330
GP PG GP EPG G P P P G G G G
Sbjct: 734 GLEGPPGPPGFPGPKG---EPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTG 790
Query: 331 CSSL-GMVVIADLSTDPTELEERALE---VAGPDGQASAISP-ASPRRKAADGGHRRALP 385
L G + P + L V GP G P P G + P
Sbjct: 791 LDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPG--EKGDP 848
Query: 386 GCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGA--GDSGHASPDTG 443
G L + G GE G G P +GP S L +G S G+ G P G
Sbjct: 849 GPPGL--DVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGP-PG 905
Query: 444 PCVNQKQEPGPAQEEAELGGQNLERDLEGFRVSP 477
P PGP G L+ D +G + P
Sbjct: 906 P-------PGPLGIPGRSGVPGLKGD-DGLQGQP 931
Score = 37.7 bits (86), Expect = 0.033
Identities = 70/271 (25%), Positives = 80/271 (29%), Gaps = 41/271 (15%)
Query: 218 DDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVP 277
D P PG GQ P + P P+ G + GLPG P G G
Sbjct: 1102 DPGLPGLPGTPGAKGQ----PGLPGFPGTPGPPGPK-GISGPPGNPGLPGEPGPVGGGGH 1156
Query: 278 CTPASAPTSGPAPGL----GPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSS 333
P PG GPA EPG G+P P P G++G+G
Sbjct: 1157 PGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDG--------- 1207
Query: 334 LGMVVIADLSTDPTELEERALE----VAGPDGQASAISPASPRRKAADGGH-RRALPGCT 388
G+ I P E V GP G + PA K G PG T
Sbjct: 1208 -GLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGPT 1266
Query: 389 SL--------------TGETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGA-- 432
G GE G GQ G P L G L G +
Sbjct: 1267 GFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMK 1326
Query: 433 GDSG-HASPDTGPCVNQKQEPGPAQEEAELG 462
GD G P PG A E E G
Sbjct: 1327 GDPGLPGVPGFPGMKGPSGVPGSAGPEGEPG 1357
Score = 34.3 bits (77), Expect = 0.36
Identities = 74/282 (26%), Positives = 90/282 (31%), Gaps = 74/282 (26%)
Query: 222 PETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGA----GLPGGPQEEGD--- 274
P +PG G L +GEK GA G GA G PG E GD
Sbjct: 493 PGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILT 552
Query: 275 --------------GVPCTPASAPTSGP--APGL-GPASWCLEPGSVA-QGSPDPQQTPS 316
G P P T G PGL GP EPG + +G P P
Sbjct: 553 FPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKG---EPGGITFKGERGPPGNPG 609
Query: 317 RMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALE-VAGPDGQASAISPASPRRKA 375
G G +G G P + E+ ++ VAG GQ
Sbjct: 610 LPGLPGN--IGPMGPPGFG---------PPGPVGEKGIQGVAGNPGQPG----------- 647
Query: 376 ADGGHRRALPGCTSLTGETTGESGEAGQDGKP--------PGDVLVGPTASLALAPGS-G 426
+PG G+T + G+ G G P PGD + L PGS G
Sbjct: 648 --------IPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKG 699
Query: 427 E-SMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELGGQNLE 467
E + G G G P P + PGP G LE
Sbjct: 700 EPGIPGIGLPGPPGPKGFPGI-----PGPPGAPGTPGRIGLE 736
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 52.8 bits (125), Expect = 1e-06
Identities = 89/327 (27%), Positives = 109/327 (33%), Gaps = 58/327 (17%)
Query: 181 QAVPGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDRVPGDGGQKEHLPSI 240
Q V G P PP + A L P PG+ G LP +
Sbjct: 26 QRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGPPGPKGAPGKPGKPGEAGLPG-LPGV 84
Query: 241 DS----EGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSGPAPGL---G 293
D +G +GAP E G+ G PG P G G+P P A SGP G+ G
Sbjct: 85 DGLTGRDGPPGPKGAPGERGS-----LGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRG 139
Query: 294 PASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSL---------GMVVIADLST 344
P PG G P P P G EG + L C S+ GM
Sbjct: 140 PPGPSGLPG--LPGPPGPPGPPGHPGVLPEGA-TDLQCPSICPPGPPGPPGMPGF----K 192
Query: 345 DPTELEERALEVAGPDGQASAISPASPRRKAADGGHR-----RALPGCTSLTGE------ 393
PT + EV G DG+ P P G + R LPG G+
Sbjct: 193 GPTGYKGEQGEV-GKDGEKGDPGPPGPAGLPGSVGLQGPRGLRGLPGPLGPPGDRGPIGF 251
Query: 394 -----------TTGESGEAGQDG--KPPGDV-LVGPTASLALAPGSGESMMGAGDSGHAS 439
G+ GE G +G P GD+ GP + +A SGE M D +
Sbjct: 252 RGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGV 311
Query: 440 PDTGPCVNQKQEPGPAQEEAELGGQNL 466
P QK E G E G L
Sbjct: 312 PGLD---GQKGEAGRNGAPGEKGPNGL 335
Score = 37.7 bits (86), Expect = 0.033
Identities = 85/340 (25%), Positives = 116/340 (34%), Gaps = 52/340 (15%)
Query: 191 PDDPPDRGTGLSASQRASQDHLSEQG--ADDSKPETDRVPGDGGQKEHLPSIDSEGEKPD 248
P P G+ +R L E G + P +PG+ G+ H S + G +
Sbjct: 336 PGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGP 395
Query: 249 RGAPQEGGAQRTAGA----GLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWCLEPGSV 304
GAP G Q G+ GLPG GD P A +GP G A PG
Sbjct: 396 PGAPGVRGFQGQKGSMGDPGLPGPQGLRGDVGDRGPGGA--AGPKGDQGIAGSDGLPGDK 453
Query: 305 AQGSPDPQQTP-SRMGREGE----GTHSSLGCSSLGMVVIADLSTDPTELEERALE-VAG 358
+ P P G GE GT G S + + P L + + V G
Sbjct: 454 GELGPSGLVGPKGESGSRGELGPKGTQGPNGTSG-----VQGVPGPPGPLGLQGVPGVPG 508
Query: 359 PDGQASAISPASPRRKAADGGHRRALPGCTS-------------LTGETTGESGEAGQDG 405
G+ P P ++A++ R G S L + G G AG G
Sbjct: 509 ITGK-----PGVPGKEASEQRIRELCGGMISEQIAQLAAHLRKPLAPGSIGRPGPAGPPG 563
Query: 406 KPPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELGGQN 465
P GP S+ PG+ G +G D GP NQ A L G
Sbjct: 564 PP------GPPGSIG-HPGARGPPGYRGPTGELG-DPGPRGNQGDRGDKGAAGAGLDGPE 615
Query: 466 LERDLEGFRVSPQASVVLEHREIADDPLQEPG--AQQGIP 503
++ +G + P S ++ D EPG G+P
Sbjct: 616 GDQGPQGPQGVPGTS-----KDGQDGAPGEPGPPGDPGLP 650
Score = 37.0 bits (84), Expect = 0.056
Identities = 56/207 (27%), Positives = 68/207 (32%), Gaps = 30/207 (14%)
Query: 227 VPGDGGQKEHLPSIDSEGEKPDRGAP-------------QEGGAQRTAGAGLPGGPQEEG 273
VPG GQK + GEK G P + G A AG G P G
Sbjct: 311 VPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPG 370
Query: 274 D-GVPCTPASAPTSGPAPGLGPASWCLEPGSVA----------QGSPDPQQTPSRMGREG 322
D G+P A G A LGP PG G P PQ +G G
Sbjct: 371 DAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPGPQGLRGDVGDRG 430
Query: 323 EGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGHR- 381
G + G+ L D EL L GP G++ + P+ G
Sbjct: 431 PGGAAG-PKGDQGIAGSDGLPGDKGELGPSGL--VGPKGESGSRGELGPKGTQGPNGTSG 487
Query: 382 -RALPGCTSLTGETTGESGEAGQDGKP 407
+ +PG G G G G GKP
Sbjct: 488 VQGVPGPPGPLG-LQGVPGVPGITGKP 513
Score = 32.3 bits (72), Expect = 1.4
Identities = 54/205 (26%), Positives = 74/205 (36%), Gaps = 38/205 (18%)
Query: 142 PGCQLLVETLGVPLQEATELGDPTQADSARPEQSSQSPVQA----VPGS----GDSQPDD 193
PG + GVP +EA+E EQ +Q PGS G + P
Sbjct: 504 PGVPGITGKPGVPGKEASEQRIRELCGGMISEQIAQLAAHLRKPLAPGSIGRPGPAGPPG 563
Query: 194 PPDRGTGLSASQRASQDHLSEQGADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQ 253
PP S H +G + T + GD G + ++G++ D+GA
Sbjct: 564 PP--------GPPGSIGHPGARGPPGYRGPTGEL-GDPGPR------GNQGDRGDKGA-- 606
Query: 254 EGGAQRTAGAGLPGGPQEEG----DGVPCTPASAPTSGPAPGLGPASWCLEPGSV-AQGS 308
AGAGL G ++G GVP T P GP PG++ AQG+
Sbjct: 607 -------AGAGLDGPEGDQGPQGPQGVPGTSKDGQDGAPGEP-GPPGDPGLPGAIGAQGT 658
Query: 309 PDPQQTPSRMGREGEGTHSSLGCSS 333
P T + G G G S
Sbjct: 659 PGICDTSACQGAVLGGVGEKSGSRS 683
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 51.6 bits (122), Expect = 2e-06
Identities = 73/265 (27%), Positives = 96/265 (36%), Gaps = 41/265 (15%)
Query: 227 VPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQ-------EEGD----G 275
+PG G + + +G + +RG P G G P GP EEGD G
Sbjct: 1023 LPGQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGDKGDVG 1082
Query: 276 VPCTPASAPTSGPA-----PGL-GPASWCLEPGSVAQGSPDPQQTPSRMGREGE-GTHSS 328
P S G A PG+ GPA PG A G+ + P G++G+ G
Sbjct: 1083 APGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPG--ADGAQGRRGPPGLFGQKGDDGVRGF 1140
Query: 329 LGCSSLGMVVIADLSTDPTELEERA-LEVAGPDGQASAISPASPRRKAADGGHRRALPGC 387
+G +G + L P E E + GP G P P G LPG
Sbjct: 1141 VGV--IGPPGLQGLPGPPGEKGEVGDVGSMGPHGAPGPRGPQGPTGSEGTPG----LPGG 1194
Query: 388 TSLTGET--TGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPC 445
G GE G+AG G P + GP + G+S G SG A P
Sbjct: 1195 VGQPGAVGEKGERGDAGDPGPPGAPGIPGPKGDIG---EKGDS----GPSGAAGPP---- 1243
Query: 446 VNQKQEPGPAQEEAELGGQNLERDL 470
+K PG + +G L DL
Sbjct: 1244 -GKKGPPGEDGAKGSVGPTGLPGDL 1267
Score = 48.5 bits (114), Expect = 2e-05
Identities = 102/408 (25%), Positives = 130/408 (31%), Gaps = 79/408 (19%)
Query: 154 PLQEATELGDPTQADSARP--------EQSSQSPVQAVPGSGD-SQPDDPPDRGTGLSAS 204
P + E GD + +A P E ++ V GD P DP G S
Sbjct: 1224 PKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDLGPPGDPGVSGIDGSPG 1283
Query: 205 QRASQDHLSEQGADDS--KPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAG 262
++ + G + +P PG G H+ EGEK +G P
Sbjct: 1284 EKGDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEP---------- 1333
Query: 263 AGLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREG 322
GP DG P GP +GP PG V G P P +MG G
Sbjct: 1334 -----GP----DGPPGRTGPMGARGPPGRVGPEGLRGIPGPV--GEPGLLGAPGQMGPPG 1382
Query: 323 EGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGHRR 382
LG + L D E+ G G I P + D G
Sbjct: 1383 ----------PLGPSGLPGLKGDTGPKGEK-----GHIGLIGLIGPPGEAGEKGDQG--- 1424
Query: 383 ALPGCTSLTGE--TTGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASP 440
LPG G G G G G P + GP + GS SM GD+G A P
Sbjct: 1425 -LPGVQGPPGPKGDPGPPGPIGSLGHPGPPGVAGPLGQKG-SKGSPGSMGPRGDTGPAGP 1482
Query: 441 DTGPCVNQKQEPGPAQEEAELGGQNLERD--------LEGFRVSPQASVVLEHREIADDP 492
PGP AEL G R +EG AS+ E+ +
Sbjct: 1483 -----------PGPPGAPAELHGLRRRRRFVPVPLPVVEGGLEEVLASLTSLSLEL-EQL 1530
Query: 493 LQEPGAQQGIPDTTSELAGQRDHLPH-----SADQGTWADSLAVELDF 535
+ PG + EL HLP +QG DS V +F
Sbjct: 1531 RRPPGTAERPGLVCHELHRNHPHLPDGEYWIDPNQGCARDSFRVFCNF 1578
Score = 45.1 bits (105), Expect = 2e-04
Identities = 75/272 (27%), Positives = 92/272 (33%), Gaps = 54/272 (19%)
Query: 219 DSKPETDR-------VPGDGGQKE---HLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPG- 267
D+ P+ DR +PG+ GQ+ H+ GE +RGA EG T AG PG
Sbjct: 543 DTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGERGA--EGPPGPTGQAGEPGP 600
Query: 268 ----GPQEEGD--------GVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQ-- 313
GP+ G+ P + GP GP GS QG P PQ
Sbjct: 601 RGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGPPGQQGNHGS--QGLPGPQGLI 658
Query: 314 -TPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPR 372
TP G G L S L E GP G A PR
Sbjct: 659 GTPGEKGPPGNPGIPGLPGSD------GPLGHPGHEGPTGEKGAQGPPGSAGPPGYPGPR 712
Query: 373 RKAADGGHRRALPGCTSLTGETTGESGEAGQDGKP--PGDVLVGPTASLALAPGSGESMM 430
G+R GE GE G+DG P GDV + APG
Sbjct: 713 GVKGTSGNRGL-----------QGEKGEKGEDGFPGFKGDVGLKGDQGKPGAPGPRGEDG 761
Query: 431 GAGDSGHASPDTGPCVNQKQEPGPAQEEAELG 462
G G A ++ PG A E+ +LG
Sbjct: 762 PEGPKGQAGQ-----AGEEGPPGSAGEKGKLG 788
Score = 44.3 bits (103), Expect = 3e-04
Identities = 81/298 (27%), Positives = 95/298 (31%), Gaps = 48/298 (16%)
Query: 228 PGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSG 287
PGD G G K D+G P GA + G P GP G G+P S G
Sbjct: 985 PGDPGPT---------GLKGDKGPPGPVGANGSPGERGPLGP-AGGIGLPGQSGSEGPVG 1034
Query: 288 PAPGLGPASWCLEPGSVAQ----GSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLS 343
PA G PG + G P P G GE D+
Sbjct: 1035 PAGKKGSRGERGPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGDK------------GDVG 1082
Query: 344 TDPTELEERALEVAGPDGQASAISPAS-PRRKAADGGHRRALPGCTSLTGETTGESGEAG 402
+ + AGP GQ PA P ADG R P G G+ G
Sbjct: 1083 APGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGP---------PGLFGQKG 1133
Query: 403 QDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELG 462
DG ++GP L PG GD G P P + GP E G
Sbjct: 1134 DDGVRGFVGVIGPPGLQGL-PGPPGEKGEVGDVGSMGPHGAP--GPRGPQGPTGSEGTPG 1190
Query: 463 GQNLERDLEGFRVSPQASVVLEHREIADDPLQEPGAQQGIPDTTSELAGQRDHLPHSA 520
L G P A R A DP PGA GIP ++ + D P A
Sbjct: 1191 -------LPGGVGQPGAVGEKGERGDAGDP-GPPGA-PGIPGPKGDIGEKGDSGPSGA 1239
Score = 37.4 bits (85), Expect = 0.043
Identities = 56/230 (24%), Positives = 72/230 (31%), Gaps = 43/230 (18%)
Query: 229 GDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGA-GLPGGPQEEG-DGVPCTPASAPTS 286
G G+K G + +RG P G + GA G PG + G DG P P
Sbjct: 812 GPIGEKGKSGKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGL- 870
Query: 287 GPAPGL-GPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTD 345
PGL GP G P P+ P G++G H
Sbjct: 871 ---PGLQGPP-----------GFPGPKGPPGHQGKDGRPGH------------------- 897
Query: 346 PTELEERALE-VAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQD 404
P + E + GP G A + P + G R PG GE G G +
Sbjct: 898 PGQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLGERGP-PGPPG----PPGEQGLPGLE 952
Query: 405 GKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGP 454
G+ +GP L +G G P K PGP
Sbjct: 953 GREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGP 1002
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 51.2 bits (121), Expect = 3e-06
Identities = 127/473 (26%), Positives = 162/473 (34%), Gaps = 88/473 (18%)
Query: 40 LHHPE--EPEGKL--GPVPSTQQHGE----EPGKAVSSSPDEETGSPCRLLRQP--EKEP 89
LH P+ EP+ + GP + GE EPG V P E P L+ P + P
Sbjct: 255 LHRPQNQEPQSQAAHGPRGLKGEKGEPAVLEPGMLVEGPPGPE--GPAGLIGPPGIQGNP 312
Query: 90 APL--PPSQNSFGRFVPQFAKSRKTVTRKEEMKDEDRGSGAFSLETIAESSAQSPGCQLL 147
P+ P + GR + M GSG + +AQ Q +
Sbjct: 313 GPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVV--AAQEAQAQAI 370
Query: 148 VETLGVPLQEATELGDP-TQADSARPEQSSQSPVQAVPG-SGDSQPDDPPDRGTGLSASQ 205
++ + L+ G P + RP Q + G SGD P P RG
Sbjct: 371 LQQARLALR-----GPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGP--RGPQGLTGP 423
Query: 206 RASQDHLSEQGADDSKPETDRVPGDGGQK-----EHLPSIDSEGEKPDRGAPQEGGAQRT 260
GAD ++ +PGD G K + LP + GEK RG + GAQ
Sbjct: 424 PGKAGRRGRAGADGARG----MPGDPGVKGDRGFDGLPGLP--GEKGHRG---DTGAQ-- 472
Query: 261 AGAGLPGGPQEE---GDGVPCTPASAP-TSGPAPGLGPASWCLEPGSVA----------- 305
GLPG P E+ GD P P SGP LGP PG
Sbjct: 473 ---GLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPK 529
Query: 306 -----QGSPDP---QQTPSRMGREGE----GTHSSLGCSSLGMVVIADLSTDPTELEERA 353
QG P P Q TP G G G H G + S P +
Sbjct: 530 GSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGK- 588
Query: 354 LEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKP--PGDV 411
GP G P+ P+ G R + G + G G GE G+DG P GD+
Sbjct: 589 ---EGPPGTKGNQGPSGPQGPLGYPG-PRGVKGVDGIRG-LKGHKGEKGEDGFPGFKGDI 643
Query: 412 LVGPTASLALAPGSGESMMGAGDSGHASP--DTGPCVNQKQEPGPAQEEAELG 462
V PGS G G P D GP PG E+ +LG
Sbjct: 644 GVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGP-------PGLMGEKGKLG 689
Score = 48.1 bits (113), Expect = 2e-05
Identities = 74/263 (28%), Positives = 90/263 (34%), Gaps = 67/263 (25%)
Query: 228 PGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAG-------------AGLPGGPQEEGD 274
PG G++ + EG K D G P G AG AG PG EG
Sbjct: 841 PGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGP 900
Query: 275 GVPCTPASAPTSGPAPGLGPASWCLEPGSVA-QGSPDPQQTPSRMGREG-EGTHSSLGCS 332
P PA +P A G G G + G P PQ P G +G G +G
Sbjct: 901 SGPPGPAGSPGERGAAGSG--------GPIGPPGRPGPQGPPGAAGEKGVPGEKGPIG-- 950
Query: 333 SLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGHRRAL--PGCTSL 390
PT + G G PA P A + G + + PG
Sbjct: 951 -------------PTGRD-------GVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKG- 989
Query: 391 TGETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGA-GDSGH--ASPDTGP--- 444
T G GE G G PPG +GP A GE GA G GH A D G
Sbjct: 990 ---TKGNKGEHGPPG-PPGP--IGPVGQPGAAGADGEP--GARGPQGHFGAKGDEGTRGF 1041
Query: 445 -----CVNQKQEPGPAQEEAELG 462
+ + PGP+ E+ E G
Sbjct: 1042 NGPPGPIGLQGLPGPSGEKGETG 1064
Score = 45.8 bits (107), Expect = 1e-04
Identities = 99/387 (25%), Positives = 126/387 (32%), Gaps = 88/387 (22%)
Query: 142 PGCQLLVETLGVPLQEATELGDPTQADSARPEQSSQSPVQAVPGS-------------GD 188
PG Q L T G +E T+ GDP P + + ++ PG G+
Sbjct: 844 PGEQGLPGTAG---KEGTK-GDP--GPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGN 897
Query: 189 SQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDRVPGDGGQKEHLPSIDSEGEKPD 248
P PP G S +R + G +P PG G+K GEK
Sbjct: 898 EGPSGPP--GPAGSPGERGAAGSGGPIGPP-GRPGPQGPPGAAGEK------GVPGEKGP 948
Query: 249 RGAPQEGGAQRTAG----AGLPGGPQEEGD-------GVPCTPASAPTSGPAPGLGPASW 297
G G Q G AG PG E+GD G T + GP GP
Sbjct: 949 IGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGP 1008
Query: 298 CLEPGSV-AQGSPDPQQTPSRMGREG-EGTHSSLGCSS-LGMVVIADLSTDPTELEERAL 354
+PG+ A G P + G +G EGT G +G+ + S + E + +
Sbjct: 1009 VGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGD--V 1066
Query: 355 EVAGPDGQASAISPASPRRKAADG--------------GHR-----------RALPGCTS 389
GP G PA P ADG G + + PG
Sbjct: 1067 GPMGPPGPPGPRGPAGPN--GADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKG 1124
Query: 390 LTGETTGESGEAGQDGKPPGDVLVGPTASLAL--------------APGSGESMMGAGDS 435
GE GE GE+GQ G+P GPT PG G G
Sbjct: 1125 PRGER-GEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAK 1183
Query: 436 GHASPDTGPCVNQKQEPGPAQEEAELG 462
G D P Q PGP E G
Sbjct: 1184 GDRGEDGEP--GQPGSPGPTGENGPPG 1208
Score = 45.4 bits (106), Expect = 2e-04
Identities = 76/271 (28%), Positives = 97/271 (35%), Gaps = 60/271 (22%)
Query: 228 PGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSG 287
PG+ G+ S +GE +G E G + +G PG P G P G
Sbjct: 1102 PGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQ--PGEP-----GPPGPKGPTGDDG 1154
Query: 288 PAPGLGPASWCLEPGSVAQGSPDPQQ-TPSRMGREGE-GTHSSLGCSSLGMVVIADLSTD 345
P GP + +PG +G P Q G +GE G S G + +
Sbjct: 1155 PKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTG--------ENGP 1206
Query: 346 PTELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDG 405
P L +R GP G SP S R+ G + PG G+ TG G AG G
Sbjct: 1207 PGPLGKR-----GPAG-----SPGSEGRQGGKGA--KGDPGAIGAPGK-TGPVGPAGPAG 1253
Query: 406 KPPGDVLVGPTASLALAPGSGESMMGAGDSGHASP--DTGP-----------CVNQKQEP 452
KP D L G PGS G +G A P GP +K P
Sbjct: 1254 KPGPDGLRG-------LPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHP 1306
Query: 453 ------GPAQEEAELGGQNLERDLEGFRVSP 477
GP E+ E G +R L G + SP
Sbjct: 1307 GLIGLIGPPGEQGEKG----DRGLPGPQGSP 1333
Score = 43.9 bits (102), Expect = 5e-04
Identities = 78/287 (27%), Positives = 96/287 (33%), Gaps = 33/287 (11%)
Query: 183 VPGS-GDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDRVPGDGGQKEHL--PS 239
VPGS G+ P+ P R TG + L + P PG G K L P
Sbjct: 654 VPGSRGEDGPEGPKGR-TGPTGDP--GPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPG 710
Query: 240 ID-SEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWC 298
+ GEK RG + G + G P G + + A + G P P
Sbjct: 711 FPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERG 770
Query: 299 LEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAG 358
L G P P+ P G++G H G V + P V G
Sbjct: 771 LPGPQGPNGFPGPKGPPGPPGKDGLPGHP----GQRGEVGFQGKTGPP-----GPPGVVG 821
Query: 359 PDGQASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTAS 418
P G A P R G PG L G T G+ G G G P GP A
Sbjct: 822 PQGAAGETGPMGERGHPGPPGP----PGEQGLPG-TAGKEGTKGDPGPPGAPGKDGP-AG 875
Query: 419 LALAPGS---GESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELG 462
L PG + G G G+ P +GP PGPA E G
Sbjct: 876 LRGFPGERGLPGTAGGPGLKGNEGP-SGP-------PGPAGSPGERG 914
Score = 43.9 bits (102), Expect = 5e-04
Identities = 87/348 (25%), Positives = 117/348 (33%), Gaps = 79/348 (22%)
Query: 191 PDDPPDRGTGLSASQRASQDHLSEQGADDSKPET------DRVPGDGGQKEHLPSIDSEG 244
P DP G G Q ++ E G + +P + + PG G++ S SEG
Sbjct: 1165 PGDPGPPGEGGPRGQDGAKGDRGEDG-EPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEG 1223
Query: 245 EKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWCLEPGSV 304
+ +GA + GA G P GP +GPA GP PGSV
Sbjct: 1224 RQGGKGAKGDPGAIGAPGKTGPVGP----------------AGPAGKPGPDGLRGLPGSV 1267
Query: 305 AQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQAS 364
Q Q P G+ G +G + L D E+ G G
Sbjct: 1268 GQ-----QGRPGATGQAGPP-------GPVGPPGLPGLRGDAGAKGEK-----GHPGLIG 1310
Query: 365 AISPASPRRKAADGGHRRALPGCTSLTGE-----TTGESGEAGQDGKPPGDVLVGPT--- 416
I P + + D R LPG G+ G SG G G PPG L GP
Sbjct: 1311 LIGPPGEQGEKGD----RGLPGPQGSPGQKGEMGIPGASGPIGPGG-PPG--LPGPAGPK 1363
Query: 417 -ASLALAPGSGESMMGA-GDSGHASPDTGPCVNQKQEPGPAQEEAELGGQNLERDLEGFR 474
A A PG + G G GH P + +P P Q + R ++G R
Sbjct: 1364 GAKGATGPGGPKGEKGVQGPPGHPGPP-----GEVIQPLPIQMP-----KKTRRSVDGSR 1413
Query: 475 VSPQASVVLEHREIADDPLQEPGAQQGIPDTTSELAGQRDHLPHSADQ 522
+ + +D G G P E+ G D L +Q
Sbjct: 1414 L------------MQEDEAIPTGGAPGSPGGLEEIFGSLDSLREEIEQ 1449
Score = 43.1 bits (100), Expect = 8e-04
Identities = 100/433 (23%), Positives = 136/433 (31%), Gaps = 87/433 (20%)
Query: 78 PCRLLRQPEKEPAPLPPSQNSFGRFVPQFAKSRKTVTRKEEMKDEDRGSGAFSLETIAES 137
P R R P+++P+ L QN PQ + +K E + E
Sbjct: 241 PHRAQRSPQQQPSRLHRPQNQ----EPQ----SQAAHGPRGLKGEKGEPAVLEPGMLVEG 292
Query: 138 SAQSPGCQLLVETLGV-----PLQEATELGDPTQA-----DSAR--PEQSSQSPVQAVPG 185
G L+ G+ P+ + E G P +A D A P S P + G
Sbjct: 293 PPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSG 352
Query: 186 SGDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDRV-----PGDGGQKEHLPSI 240
GD P + Q+A L+ +G T R PG G K +
Sbjct: 353 GGDKGPVVAAQEAQAQAILQQA---RLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDL 409
Query: 241 DSEGEKPDRGA---PQEGGAQRTAGA----GLPGGPQEEGD----GVPCTPASAPTSGPA 289
+G + +G P + G + AGA G+PG P +GD G+P P G
Sbjct: 410 GPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDT 469
Query: 290 PGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPTEL 349
AQG P P G +GE +G L P E
Sbjct: 470 G--------------AQGLPGPPGEDGERGDDGE-----IGPRGL-----------PGES 499
Query: 350 EERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKPPG 409
R L GP G P R G + +L GE G GQ G P
Sbjct: 500 GPRGL--LGPKGPPGIPGPPGVRGMDGPQGPKGSLG--------PQGEPGPPGQQGTPGT 549
Query: 410 DVLVGPTASLAL--------APGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAEL 461
L GP ++ PG G GH + P Q P Q
Sbjct: 550 QGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGY 609
Query: 462 GGQNLERDLEGFR 474
G + ++G R
Sbjct: 610 PGPRGVKGVDGIR 622
>gi|150418009 transforming, acidic coiled-coil containing protein 2
isoform a [Homo sapiens]
Length = 2948
Score = 51.2 bits (121), Expect = 3e-06
Identities = 138/591 (23%), Positives = 196/591 (33%), Gaps = 150/591 (25%)
Query: 44 EEPEGKLG--PVPSTQQHGEEPGKAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSFGR 101
E PEG G P PS Q+ GE +++ E QP P PLP
Sbjct: 480 EHPEGDPGEVPAPSPQERGEH----LNTEQSHEV--------QPGVPPPPLP-------- 519
Query: 102 FVPQFAKSRKTVTRKEEMKDEDRGSGAFSLETIAESSAQSPGCQLLVETLGVPLQEATEL 161
KE+ + G+ L SA+ P
Sbjct: 520 --------------KEQSHEVQPGAPPPPLPKAPSESARGP------------------- 546
Query: 162 GDPTQADSARPEQSSQSPVQAVPGS--------GDSQPDDPPDRGTGLSASQRASQDHLS 213
P D A+ + S SP A GS G + +PPD G D +
Sbjct: 547 --PGPTDGAKVHEDSTSPAVAKEGSRSPGDSPGGKEEAPEPPDGG-----------DPGN 593
Query: 214 EQGADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGP---- 269
QG D + R P G K+ L S+ E D + R GAG GP
Sbjct: 594 LQGEDSQAFSSKRDPEVG--KDELSKPSSDAESRDHPSSHSAQPPRKGGAGHTDGPHSQT 651
Query: 270 -QEEGDGVPCTPASA-PTSGPAPGLGPASWCLEPGSVAQGS------PDPQQTPSRMGRE 321
+ + G+P P P P G + G++ +GS PD Q+ +GR
Sbjct: 652 AEADASGLPHKLGEEDPVLPPVPD-GAGEPTVPEGAIWEGSGLQPKCPDTLQSREGLGRM 710
Query: 322 GEGTHSSLGCSSLGMVVIADLSTDPTELEERALEV---AGPDGQASAISPASPRRKAADG 378
S +A+++ E E LE+ DG+ SP PR A D
Sbjct: 711 ESFLTLESEKSDFPPTPVAEVAPKAQE-GESTLEIRKMGSCDGEGLLTSPDQPRGPACDA 769
Query: 379 GHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGE----SMMGAGD 434
+ AG P G+ L AL + S G G
Sbjct: 770 SR----------------QEFHAGVPHPPQGENLAADLGLTALILDQDQQGIPSCPGEGW 813
Query: 435 SGHASPDTGPCVNQKQ-EPGPAQEEAEL------------GGQNLERDLEGFR----VSP 477
A+ + ++K +P AQ E + G+ GF+ S
Sbjct: 814 IRGAASEWPLLSSEKHLQPSQAQPETSIFDVLKEQAQPPENGKETSPSHPGFKDQGADSS 873
Query: 478 QASVVLEHREIADDPLQEPGAQQGIPDTTSELAGQRDHLPHSADQGTWADS-LAVELDFL 536
Q V +E +E D+ L G Q+ SEL Q LP +GT +D+ + D +
Sbjct: 874 QIHVPVEPQE--DNNLPTHGGQE--QALGSELQSQ---LP----KGTLSDTPTSSPTDMV 922
Query: 537 LDSQIQDALDASDFEAPPEQLFPS-GNK--PGPCWPGPSSHANGDPVAVAK 584
+S + + S+ AP Q P+ G K G C G SS + V K
Sbjct: 923 WESSL---TEESELSAPTRQKLPALGEKRPEGACGDGQSSRVSPPAADVLK 970
Score = 39.3 bits (90), Expect = 0.011
Identities = 129/585 (22%), Positives = 194/585 (33%), Gaps = 114/585 (19%)
Query: 20 LKNPRLGDFYGDPQSSMLGCLHHPEEPEGKLGPVPSTQQHGEEPGKAV---SSSPDEETG 76
L +P + + DPQ + PEG L P P Q E P ++ P+
Sbjct: 72 LVSPEVTEPRKDPQGA--------RGPEGSLLPSPPPSQEREHPSSSMPFAECPPEGCLA 123
Query: 77 SPCRL------LRQPEKEPAPLPPSQNSFGRFVPQFAKSRKTVTRKEEM--------KDE 122
SP + P +EPAP N+ G F R + T +E+ + +
Sbjct: 124 SPAAAPEDGPQTQSPRREPAP-----NAPGDIAAAFPAERDSSTPYQEIAAVPSAGRERQ 178
Query: 123 DRGSGAFSLETIAESSAQSPGCQ--LLVETLGVPL------------QEATELGDPTQAD 168
+ G S + + QSPG L E + PL QE G A+
Sbjct: 179 PKEEGQKSSFSFSSGIDQSPGMSPVPLREPMKAPLCGEGDQPGGFESQEKEAAGGFPPAE 238
Query: 169 S----ARPEQSSQSPVQAVPGSGDSQ-------------PDDPP------DRGTGLSASQ 205
S A + + ++P A G+ S P DP +RG G + Q
Sbjct: 239 SRQGVASVQVTPEAPAAAQQGTESSAVLEKSPLKPMAPIPQDPAPRASDRERGQGEAPPQ 298
Query: 206 RASQD-------HL--SEQGADDSKPETDRVPGDGGQK---EHLPSIDSEGEKPDRG-AP 252
+ D HL S GA + E + + Q+ +LP + P P
Sbjct: 299 YLTDDLEFLRACHLPRSNSGA-APEAEVNAASQESCQQPVGAYLPHAELPWGLPSPALVP 357
Query: 253 QEGGAQRTA--GAGLPGGPQEEGDG-----VPCTPASAPTSGPAPGLGPASWCLEPGSVA 305
+ GG+ + A + G PQ G V C A G P + P L P A
Sbjct: 358 EAGGSGKEALDTIDVQGHPQTGMRGTKPNQVVCVAAGGQPEGGLP-VSPEPSLLTPTEEA 416
Query: 306 QGSPDPQQTPSR---MGREGEGTHSSLGCSSLGMVVIADLSTDPTE-----LEERALEVA 357
+ P+ + E G+ S S GM V AD + + + LE + ++
Sbjct: 417 HPASSLASFPAAQIPIAVEEPGSSSRESVSKAGMPVSADAAKEVVDAGLVGLERQVSDLG 476
Query: 358 G----PDGQASAISPASPRRKAADGGH------RRALPGCTSLTGETTGESGEAGQDGKP 407
P+G + SP+ + G H PG E Q G P
Sbjct: 477 SKGEHPEGDPGEVPAPSPQER---GEHLNTEQSHEVQPGVP--PPPLPKEQSHEVQPGAP 531
Query: 408 PGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELGGQNLE 467
P + P+ S PG + DS + + PG +E E
Sbjct: 532 PPPLPKAPSESARGPPGPTDGAKVHEDSTSPAVAKEGSRSPGDSPGGKEEAPEPPDGGDP 591
Query: 468 RDLEGFRVSPQASVVLEHREIADDPLQEPGAQQGIPDTTSELAGQ 512
+L+G QA E+ D L +P + D S + Q
Sbjct: 592 GNLQG--EDSQAFSSKRDPEVGKDELSKPSSDAESRDHPSSHSAQ 634
Score = 34.3 bits (77), Expect = 0.36
Identities = 108/528 (20%), Positives = 165/528 (31%), Gaps = 115/528 (21%)
Query: 40 LHHPEEPE--------GKLGPVPSTQQHGEEPGKAVSSSPDEETGSPCRL-----LRQPE 86
+H P EP+ G ++ + P +S +P T SP + L +
Sbjct: 875 IHVPVEPQEDNNLPTHGGQEQALGSELQSQLPKGTLSDTP---TSSPTDMVWESSLTEES 931
Query: 87 KEPAPLPPSQNSFGRFVPQFA-----KSRKTVTRKEEMKDEDRGSGAFSLETIAESSAQS 141
+ AP + G P+ A SR + + +KD ET +
Sbjct: 932 ELSAPTRQKLPALGEKRPEGACGDGQSSRVSPPAADVLKDFSLAGNFSRKETCCTGQGPN 991
Query: 142 PGCQLLVETL--GVPLQEATEL--GDPTQADSARPEQSSQSPVQAVPGSGDSQPDDPP-- 195
Q L + L G +EA + G AD P A +G++ P P
Sbjct: 992 KSQQALADALEEGSQHEEACQRHPGASEAADGCSPLWGLSKREMASGNTGEAPPCQPDSV 1051
Query: 196 ---DRGTGLSASQRAS------QDHLSEQGADDSKPETDR-VPGDGGQKEHLPSIDSEGE 245
D L A AS QD + D+++ + VP + E + D+E
Sbjct: 1052 ALLDAVPCLPALAPASPGVTPTQDAPETEACDETQEGRQQPVPAPQQKMECWATSDAESP 1111
Query: 246 KPDRGAPQEGGAQRTAGAGLPGGPQEEGD-GVPCTPASAPTSGPAPGLGPASWCLEPGSV 304
K P G AGA GG GD G P + + GL CL G
Sbjct: 1112 KLLASFPSAGEQGGEAGAAETGGSAGAGDPGKQQAPEKPGEATLSCGLLQTEHCLTSGEE 1171
Query: 305 AQGSPDPQQTPSRMGREGEGTHSSLGCSS-------LGMVVIA--DLSTDPTELEERALE 355
A + S + + H C LG + + D ST + + L
Sbjct: 1172 A--------STSALRESCQAEHPMASCQDALLPARELGGIPRSTMDFSTHQAVPDPKELL 1223
Query: 356 VAGPDGQASAISP-----ASPRRKAADGGHRRALPGCTSLTGETTGESGEA--------- 401
++GP A+ +P ++ +R A D G + GE+ GE
Sbjct: 1224 LSGPPEVAAPDTPYLHVDSAAQRGAEDSGVKAVSSADPRAPGESPCPVGEPPLALENAAS 1283
Query: 402 -------------------------GQDGKPPGDVLVGPTASL----------------- 419
G P GP S+
Sbjct: 1284 LKLFAGSLAPLLQPGAAGGEIPAVQASSGSPKARTTEGPVDSMPCLDRMPLLAKGKQATG 1343
Query: 420 ----ALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELGG 463
A APG+G G G +G A+ +T + + EP ++ GG
Sbjct: 1344 EEKAATAPGAGAKASGEGMAGDAAGETEGSMERMGEPSQDPKQGTSGG 1391
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 50.8 bits (120), Expect = 4e-06
Identities = 111/452 (24%), Positives = 145/452 (32%), Gaps = 82/452 (18%)
Query: 43 PEEPEGKLGPVPSTQQHGEEPGKAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSFGRF 102
PE P+G+ GP G+ K P G P RQ K P + G
Sbjct: 824 PEGPKGRAGPTGDPGPSGQAGEKGKLGVP----GLPGYPGRQGPKGSTGFPGFPGANGE- 878
Query: 103 VPQFAKSRKTVTRKEEMKDEDRGSGAFSLETIAESSAQSPGCQLLVETLGVPLQEATELG 162
K + V K + + +G A+ P G P + T G
Sbjct: 879 -----KGARGVAGKPGPRGQRGPTGPRG-----SRGARGP--------TGKPGPKGTSGG 920
Query: 163 D-PTQADSARPEQSSQSPV-----QAVPG--SGDSQPDDPPDRGTGLSASQRASQDHLSE 214
D P R Q Q PV + PG D P P RG +
Sbjct: 921 DGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGV 980
Query: 215 QGADDSKPETDRV--------PGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLP 266
G ET + PG G++ + EG K D G +G + + AGL
Sbjct: 981 VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGP--QGISGKDGPAGLR 1038
Query: 267 GGPQEEG-DGVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGE-G 324
G P E G G P GP GP E GS G+ P P R G +G G
Sbjct: 1039 GFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSA--GTAGPIGLPGRPGPQGPPG 1096
Query: 325 THSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAIS---PASPRRKAADGGHR 381
G E+ AG DG + PA P + G +
Sbjct: 1097 PAGEKGAPG----------------EKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDK 1140
Query: 382 RAL--PGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGE-------SMMG- 431
+ PG G G+ G++G P L GP + +A G GE M G
Sbjct: 1141 GEIGEPG-------QKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQ 1193
Query: 432 AGDSG-HASPDTGPCVNQKQEPGPAQEEAELG 462
GD G P + + PGP E+ E G
Sbjct: 1194 KGDEGARGFPGPPGPIGLQGLPGPPGEKGENG 1225
Score = 49.7 bits (117), Expect = 8e-06
Identities = 76/279 (27%), Positives = 94/279 (33%), Gaps = 59/279 (21%)
Query: 229 GDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQ-EEGDGVPCTPASAP-TS 286
G G + S+ GEK + G G AG G P G + E+G+ P A P
Sbjct: 1249 GPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAK 1308
Query: 287 GPAPGLGPASWCLEPGSVA-QGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTD 345
GP GP PG V G P P P G++G G D
Sbjct: 1309 GPPGDDGPKG---NPGPVGFPGDPGPPGEPGPAGQDGVGGDKGE-------------DGD 1352
Query: 346 PTELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGET--TGESGEAGQ 403
P + GP G + P P K R PG G G GEAG
Sbjct: 1353 PGQ--------PGPPGPSGEAGPPGPPGK-------RGPPGAAGAEGRQGEKGAKGEAGA 1397
Query: 404 DGKPPGDVLVGPTA--------SLALAPGS-GESMM--GAGDSGHASPDTGPCV-NQKQE 451
+G P VGP L PG GE + AG G P P + K +
Sbjct: 1398 EGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGD 1457
Query: 452 PGPAQEEAELG-----------GQNLERDLEGFRVSPQA 479
PG E+ G G+ +R L G + SP A
Sbjct: 1458 PGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGA 1496
Score = 49.7 bits (117), Expect = 8e-06
Identities = 74/288 (25%), Positives = 102/288 (35%), Gaps = 41/288 (14%)
Query: 151 LGVPLQEATELGDPTQADSARPEQSSQSPVQAVPGSGDSQPDDPPDRGTGLSASQRASQD 210
+G P E E G+ +A P + P P P D G A QD
Sbjct: 1283 VGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGP-AGQD 1341
Query: 211 HLSEQGADDSKPETDRVPGDGGQ--------KEHLP-SIDSEGEKPDRGAPQEGGAQRTA 261
+ +D P PG G+ K P + +EG + ++GA E GA+
Sbjct: 1342 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1401
Query: 262 GAGLPGGPQEEGDGVPCTPASAPTSGPAPGL-GPASWCLEPGSVAQ-GSPDPQQTPSRMG 319
G P GPQ PA P G+ GP PG+ Q G P P P G
Sbjct: 1402 GKTGPVGPQ--------GPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPG 1453
Query: 320 REGE-GTHSSLGCSSLGMVVIADLSTDPTELEERALE----VAGPDGQASAISPASPRRK 374
+G+ G+ G G++ + + E +R L G G PA P
Sbjct: 1454 LKGDPGSKGEKG--HPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGP 1511
Query: 375 AADGGHRRALPGCTSLTGE--TTGESGEAGQDG--------KPPGDVL 412
G LPG G +TG +G+ G G PPG+V+
Sbjct: 1512 PGPPG----LPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVI 1555
Score = 47.4 bits (111), Expect = 4e-05
Identities = 91/346 (26%), Positives = 109/346 (31%), Gaps = 67/346 (19%)
Query: 154 PLQEATELGDPTQADSARP--EQSSQSPVQAVPGSGD--SQPDDPPDRGTGLSASQRASQ 209
P A E G P + P Q PV +PG P + D+G Q+ S+
Sbjct: 1094 PPGPAGEKGAPGEKGPQGPAGRDGVQGPV-GLPGPAGPAGSPGEDGDKGEIGEPGQKGSK 1152
Query: 210 DHLSEQGADDSK-----------PETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQ 258
E G D PG GQ+ EG + G P G Q
Sbjct: 1153 GDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQ 1212
Query: 259 RTAGAGLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRM 318
GLPG P E+G+ P P GP GP G+ PQ P +
Sbjct: 1213 -----GLPGPPGEKGENGDVGPMGPP--GPPGPRGPQG--------PNGADGPQGPPGSV 1257
Query: 319 GREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADG 378
G G G G A P E V GP G+ A P A
Sbjct: 1258 GSVG-------GVGEKGEPGEAGNPGPPGE-----AGVGGPKGERGEKGEAGPPGAAGPP 1305
Query: 379 GHR--------RALPGCTSLTGE--TTGESGEAGQDGKPPGDVLVGPTASLALAPGSGES 428
G + + PG G+ GE G AGQDG VG PG
Sbjct: 1306 GAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDG-------VGGDKGEDGDPGQPGP 1358
Query: 429 MMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELG--GQNLERDLEG 472
G SG A P P ++ PG A E G G E EG
Sbjct: 1359 ---PGPSGEAGPPGPP--GKRGPPGAAGAEGRQGEKGAKGEAGAEG 1399
Score = 41.6 bits (96), Expect = 0.002
Identities = 102/415 (24%), Positives = 129/415 (31%), Gaps = 92/415 (22%)
Query: 86 EKEPAPLPPSQNSFGRFVPQFAKSRKTVTRKEEMKDEDRGSGAFSLE-TIAESSAQSPGC 144
E E P P FG VP +T G GA+ + E + PG
Sbjct: 400 EYEDKPTSPPNEEFGPGVPAETDITETSIN---------GHGAYGEKGQKGEPAVVEPG- 449
Query: 145 QLLVETLGVPLQEATELGDP-TQADSARPEQSSQSPVQAVPG--SGDSQPDDPP------ 195
+LVE P A +G P Q + P PG D P P
Sbjct: 450 -MLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLP 508
Query: 196 -------DRGTGLSASQRASQDHLSE-----QGADDSKPETDRV-----PGDGGQKEHLP 238
+G +SA + +Q L + +G T R PG G K
Sbjct: 509 FRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESG 568
Query: 239 SIDSEGEKPDRGAP-------QEGGAQRTAGAGLPGGPQEEGD----GVPCTPASAPTSG 287
+G + +G P + G G G+PG P +GD G+P P G
Sbjct: 569 DPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRG 628
Query: 288 PAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPT 347
GP QG P P G +GE +G L P
Sbjct: 629 ER---GP-----------QGPPGPPGDDGMRGEDGE-----IGPRGL-----------PG 658
Query: 348 ELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKP 407
E R L GP G A P P DG PG G GE G GQ G P
Sbjct: 659 EAGPRGL--LGPRGTPGA--PGQPGMAGVDGP-----PGPKGNMGPQ-GEPGPPGQQGNP 708
Query: 408 PGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELG 462
L GP + PG G +G D P + G + E+ LG
Sbjct: 709 GPQGLPGPQGPIG-PPGEKGPQGKPGLAGLPGADGPP--GHPGKEGQSGEKGALG 760
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 50.8 bits (120), Expect = 4e-06
Identities = 111/452 (24%), Positives = 145/452 (32%), Gaps = 82/452 (18%)
Query: 43 PEEPEGKLGPVPSTQQHGEEPGKAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSFGRF 102
PE P+G+ GP G+ K P G P RQ K P + G
Sbjct: 773 PEGPKGRAGPTGDPGPSGQAGEKGKLGVP----GLPGYPGRQGPKGSTGFPGFPGANGE- 827
Query: 103 VPQFAKSRKTVTRKEEMKDEDRGSGAFSLETIAESSAQSPGCQLLVETLGVPLQEATELG 162
K + V K + + +G A+ P G P + T G
Sbjct: 828 -----KGARGVAGKPGPRGQRGPTGPRG-----SRGARGP--------TGKPGPKGTSGG 869
Query: 163 D-PTQADSARPEQSSQSPV-----QAVPG--SGDSQPDDPPDRGTGLSASQRASQDHLSE 214
D P R Q Q PV + PG D P P RG +
Sbjct: 870 DGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGV 929
Query: 215 QGADDSKPETDRV--------PGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLP 266
G ET + PG G++ + EG K D G +G + + AGL
Sbjct: 930 VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGP--QGISGKDGPAGLR 987
Query: 267 GGPQEEG-DGVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGE-G 324
G P E G G P GP GP E GS G+ P P R G +G G
Sbjct: 988 GFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSA--GTAGPIGLPGRPGPQGPPG 1045
Query: 325 THSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAIS---PASPRRKAADGGHR 381
G E+ AG DG + PA P + G +
Sbjct: 1046 PAGEKGAPG----------------EKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDK 1089
Query: 382 RAL--PGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGE-------SMMG- 431
+ PG G G+ G++G P L GP + +A G GE M G
Sbjct: 1090 GEIGEPG-------QKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQ 1142
Query: 432 AGDSG-HASPDTGPCVNQKQEPGPAQEEAELG 462
GD G P + + PGP E+ E G
Sbjct: 1143 KGDEGARGFPGPPGPIGLQGLPGPPGEKGENG 1174
Score = 49.7 bits (117), Expect = 8e-06
Identities = 76/279 (27%), Positives = 94/279 (33%), Gaps = 59/279 (21%)
Query: 229 GDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQ-EEGDGVPCTPASAP-TS 286
G G + S+ GEK + G G AG G P G + E+G+ P A P
Sbjct: 1198 GPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAK 1257
Query: 287 GPAPGLGPASWCLEPGSVA-QGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTD 345
GP GP PG V G P P P G++G G D
Sbjct: 1258 GPPGDDGPKG---NPGPVGFPGDPGPPGEPGPAGQDGVGGDKGE-------------DGD 1301
Query: 346 PTELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGET--TGESGEAGQ 403
P + GP G + P P K R PG G G GEAG
Sbjct: 1302 PGQ--------PGPPGPSGEAGPPGPPGK-------RGPPGAAGAEGRQGEKGAKGEAGA 1346
Query: 404 DGKPPGDVLVGPTA--------SLALAPGS-GESMM--GAGDSGHASPDTGPCV-NQKQE 451
+G P VGP L PG GE + AG G P P + K +
Sbjct: 1347 EGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGD 1406
Query: 452 PGPAQEEAELG-----------GQNLERDLEGFRVSPQA 479
PG E+ G G+ +R L G + SP A
Sbjct: 1407 PGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGA 1445
Score = 49.7 bits (117), Expect = 8e-06
Identities = 74/288 (25%), Positives = 102/288 (35%), Gaps = 41/288 (14%)
Query: 151 LGVPLQEATELGDPTQADSARPEQSSQSPVQAVPGSGDSQPDDPPDRGTGLSASQRASQD 210
+G P E E G+ +A P + P P P D G A QD
Sbjct: 1232 VGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGP-AGQD 1290
Query: 211 HLSEQGADDSKPETDRVPGDGGQ--------KEHLP-SIDSEGEKPDRGAPQEGGAQRTA 261
+ +D P PG G+ K P + +EG + ++GA E GA+
Sbjct: 1291 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1350
Query: 262 GAGLPGGPQEEGDGVPCTPASAPTSGPAPGL-GPASWCLEPGSVAQ-GSPDPQQTPSRMG 319
G P GPQ PA P G+ GP PG+ Q G P P P G
Sbjct: 1351 GKTGPVGPQ--------GPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPG 1402
Query: 320 REGE-GTHSSLGCSSLGMVVIADLSTDPTELEERALE----VAGPDGQASAISPASPRRK 374
+G+ G+ G G++ + + E +R L G G PA P
Sbjct: 1403 LKGDPGSKGEKG--HPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGP 1460
Query: 375 AADGGHRRALPGCTSLTGE--TTGESGEAGQDG--------KPPGDVL 412
G LPG G +TG +G+ G G PPG+V+
Sbjct: 1461 PGPPG----LPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVI 1504
Score = 47.4 bits (111), Expect = 4e-05
Identities = 91/346 (26%), Positives = 109/346 (31%), Gaps = 67/346 (19%)
Query: 154 PLQEATELGDPTQADSARP--EQSSQSPVQAVPGSGD--SQPDDPPDRGTGLSASQRASQ 209
P A E G P + P Q PV +PG P + D+G Q+ S+
Sbjct: 1043 PPGPAGEKGAPGEKGPQGPAGRDGVQGPV-GLPGPAGPAGSPGEDGDKGEIGEPGQKGSK 1101
Query: 210 DHLSEQGADDSK-----------PETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQ 258
E G D PG GQ+ EG + G P G Q
Sbjct: 1102 GDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQ 1161
Query: 259 RTAGAGLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRM 318
GLPG P E+G+ P P GP GP G+ PQ P +
Sbjct: 1162 -----GLPGPPGEKGENGDVGPMGPP--GPPGPRGPQG--------PNGADGPQGPPGSV 1206
Query: 319 GREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADG 378
G G G G A P E V GP G+ A P A
Sbjct: 1207 GSVG-------GVGEKGEPGEAGNPGPPGE-----AGVGGPKGERGEKGEAGPPGAAGPP 1254
Query: 379 GHR--------RALPGCTSLTGE--TTGESGEAGQDGKPPGDVLVGPTASLALAPGSGES 428
G + + PG G+ GE G AGQDG VG PG
Sbjct: 1255 GAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDG-------VGGDKGEDGDPGQPGP 1307
Query: 429 MMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELG--GQNLERDLEG 472
G SG A P P ++ PG A E G G E EG
Sbjct: 1308 ---PGPSGEAGPPGPP--GKRGPPGAAGAEGRQGEKGAKGEAGAEG 1348
Score = 41.6 bits (96), Expect = 0.002
Identities = 102/415 (24%), Positives = 129/415 (31%), Gaps = 92/415 (22%)
Query: 86 EKEPAPLPPSQNSFGRFVPQFAKSRKTVTRKEEMKDEDRGSGAFSLE-TIAESSAQSPGC 144
E E P P FG VP +T G GA+ + E + PG
Sbjct: 349 EYEDKPTSPPNEEFGPGVPAETDITETSIN---------GHGAYGEKGQKGEPAVVEPG- 398
Query: 145 QLLVETLGVPLQEATELGDP-TQADSARPEQSSQSPVQAVPG--SGDSQPDDPP------ 195
+LVE P A +G P Q + P PG D P P
Sbjct: 399 -MLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLP 457
Query: 196 -------DRGTGLSASQRASQDHLSE-----QGADDSKPETDRV-----PGDGGQKEHLP 238
+G +SA + +Q L + +G T R PG G K
Sbjct: 458 FRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESG 517
Query: 239 SIDSEGEKPDRGAP-------QEGGAQRTAGAGLPGGPQEEGD----GVPCTPASAPTSG 287
+G + +G P + G G G+PG P +GD G+P P G
Sbjct: 518 DPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRG 577
Query: 288 PAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPT 347
GP QG P P G +GE +G L P
Sbjct: 578 ER---GP-----------QGPPGPPGDDGMRGEDGE-----IGPRGL-----------PG 607
Query: 348 ELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKP 407
E R L GP G A P P DG PG G GE G GQ G P
Sbjct: 608 EAGPRGL--LGPRGTPGA--PGQPGMAGVDGP-----PGPKGNMGPQ-GEPGPPGQQGNP 657
Query: 408 PGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELG 462
L GP + PG G +G D P + G + E+ LG
Sbjct: 658 GPQGLPGPQGPIG-PPGEKGPQGKPGLAGLPGADGPP--GHPGKEGQSGEKGALG 709
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 50.8 bits (120), Expect = 4e-06
Identities = 111/452 (24%), Positives = 145/452 (32%), Gaps = 82/452 (18%)
Query: 43 PEEPEGKLGPVPSTQQHGEEPGKAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSFGRF 102
PE P+G+ GP G+ K P G P RQ K P + G
Sbjct: 812 PEGPKGRAGPTGDPGPSGQAGEKGKLGVP----GLPGYPGRQGPKGSTGFPGFPGANGE- 866
Query: 103 VPQFAKSRKTVTRKEEMKDEDRGSGAFSLETIAESSAQSPGCQLLVETLGVPLQEATELG 162
K + V K + + +G A+ P G P + T G
Sbjct: 867 -----KGARGVAGKPGPRGQRGPTGPRG-----SRGARGP--------TGKPGPKGTSGG 908
Query: 163 D-PTQADSARPEQSSQSPV-----QAVPG--SGDSQPDDPPDRGTGLSASQRASQDHLSE 214
D P R Q Q PV + PG D P P RG +
Sbjct: 909 DGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGV 968
Query: 215 QGADDSKPETDRV--------PGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLP 266
G ET + PG G++ + EG K D G +G + + AGL
Sbjct: 969 VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGP--QGISGKDGPAGLR 1026
Query: 267 GGPQEEG-DGVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGE-G 324
G P E G G P GP GP E GS G+ P P R G +G G
Sbjct: 1027 GFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSA--GTAGPIGLPGRPGPQGPPG 1084
Query: 325 THSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAIS---PASPRRKAADGGHR 381
G E+ AG DG + PA P + G +
Sbjct: 1085 PAGEKGAPG----------------EKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDK 1128
Query: 382 RAL--PGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGE-------SMMG- 431
+ PG G G+ G++G P L GP + +A G GE M G
Sbjct: 1129 GEIGEPG-------QKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQ 1181
Query: 432 AGDSG-HASPDTGPCVNQKQEPGPAQEEAELG 462
GD G P + + PGP E+ E G
Sbjct: 1182 KGDEGARGFPGPPGPIGLQGLPGPPGEKGENG 1213
Score = 49.7 bits (117), Expect = 8e-06
Identities = 76/279 (27%), Positives = 94/279 (33%), Gaps = 59/279 (21%)
Query: 229 GDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQ-EEGDGVPCTPASAP-TS 286
G G + S+ GEK + G G AG G P G + E+G+ P A P
Sbjct: 1237 GPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAK 1296
Query: 287 GPAPGLGPASWCLEPGSVA-QGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTD 345
GP GP PG V G P P P G++G G D
Sbjct: 1297 GPPGDDGPKG---NPGPVGFPGDPGPPGEPGPAGQDGVGGDKGE-------------DGD 1340
Query: 346 PTELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGET--TGESGEAGQ 403
P + GP G + P P K R PG G G GEAG
Sbjct: 1341 PGQ--------PGPPGPSGEAGPPGPPGK-------RGPPGAAGAEGRQGEKGAKGEAGA 1385
Query: 404 DGKPPGDVLVGPTA--------SLALAPGS-GESMM--GAGDSGHASPDTGPCV-NQKQE 451
+G P VGP L PG GE + AG G P P + K +
Sbjct: 1386 EGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGD 1445
Query: 452 PGPAQEEAELG-----------GQNLERDLEGFRVSPQA 479
PG E+ G G+ +R L G + SP A
Sbjct: 1446 PGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGA 1484
Score = 49.7 bits (117), Expect = 8e-06
Identities = 74/288 (25%), Positives = 102/288 (35%), Gaps = 41/288 (14%)
Query: 151 LGVPLQEATELGDPTQADSARPEQSSQSPVQAVPGSGDSQPDDPPDRGTGLSASQRASQD 210
+G P E E G+ +A P + P P P D G A QD
Sbjct: 1271 VGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGP-AGQD 1329
Query: 211 HLSEQGADDSKPETDRVPGDGGQ--------KEHLP-SIDSEGEKPDRGAPQEGGAQRTA 261
+ +D P PG G+ K P + +EG + ++GA E GA+
Sbjct: 1330 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1389
Query: 262 GAGLPGGPQEEGDGVPCTPASAPTSGPAPGL-GPASWCLEPGSVAQ-GSPDPQQTPSRMG 319
G P GPQ PA P G+ GP PG+ Q G P P P G
Sbjct: 1390 GKTGPVGPQ--------GPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPG 1441
Query: 320 REGE-GTHSSLGCSSLGMVVIADLSTDPTELEERALE----VAGPDGQASAISPASPRRK 374
+G+ G+ G G++ + + E +R L G G PA P
Sbjct: 1442 LKGDPGSKGEKG--HPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGP 1499
Query: 375 AADGGHRRALPGCTSLTGE--TTGESGEAGQDG--------KPPGDVL 412
G LPG G +TG +G+ G G PPG+V+
Sbjct: 1500 PGPPG----LPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVI 1543
Score = 47.4 bits (111), Expect = 4e-05
Identities = 91/346 (26%), Positives = 109/346 (31%), Gaps = 67/346 (19%)
Query: 154 PLQEATELGDPTQADSARP--EQSSQSPVQAVPGSGD--SQPDDPPDRGTGLSASQRASQ 209
P A E G P + P Q PV +PG P + D+G Q+ S+
Sbjct: 1082 PPGPAGEKGAPGEKGPQGPAGRDGVQGPV-GLPGPAGPAGSPGEDGDKGEIGEPGQKGSK 1140
Query: 210 DHLSEQGADDSK-----------PETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQ 258
E G D PG GQ+ EG + G P G Q
Sbjct: 1141 GDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQ 1200
Query: 259 RTAGAGLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRM 318
GLPG P E+G+ P P GP GP G+ PQ P +
Sbjct: 1201 -----GLPGPPGEKGENGDVGPMGPP--GPPGPRGPQG--------PNGADGPQGPPGSV 1245
Query: 319 GREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADG 378
G G G G A P E V GP G+ A P A
Sbjct: 1246 GSVG-------GVGEKGEPGEAGNPGPPGE-----AGVGGPKGERGEKGEAGPPGAAGPP 1293
Query: 379 GHR--------RALPGCTSLTGE--TTGESGEAGQDGKPPGDVLVGPTASLALAPGSGES 428
G + + PG G+ GE G AGQDG VG PG
Sbjct: 1294 GAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDG-------VGGDKGEDGDPGQPGP 1346
Query: 429 MMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELG--GQNLERDLEG 472
G SG A P P ++ PG A E G G E EG
Sbjct: 1347 ---PGPSGEAGPPGPP--GKRGPPGAAGAEGRQGEKGAKGEAGAEG 1387
Score = 41.6 bits (96), Expect = 0.002
Identities = 102/415 (24%), Positives = 129/415 (31%), Gaps = 92/415 (22%)
Query: 86 EKEPAPLPPSQNSFGRFVPQFAKSRKTVTRKEEMKDEDRGSGAFSLE-TIAESSAQSPGC 144
E E P P FG VP +T G GA+ + E + PG
Sbjct: 388 EYEDKPTSPPNEEFGPGVPAETDITETSIN---------GHGAYGEKGQKGEPAVVEPG- 437
Query: 145 QLLVETLGVPLQEATELGDP-TQADSARPEQSSQSPVQAVPG--SGDSQPDDPP------ 195
+LVE P A +G P Q + P PG D P P
Sbjct: 438 -MLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLP 496
Query: 196 -------DRGTGLSASQRASQDHLSE-----QGADDSKPETDRV-----PGDGGQKEHLP 238
+G +SA + +Q L + +G T R PG G K
Sbjct: 497 FRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESG 556
Query: 239 SIDSEGEKPDRGAP-------QEGGAQRTAGAGLPGGPQEEGD----GVPCTPASAPTSG 287
+G + +G P + G G G+PG P +GD G+P P G
Sbjct: 557 DPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRG 616
Query: 288 PAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPT 347
GP QG P P G +GE +G L P
Sbjct: 617 ER---GP-----------QGPPGPPGDDGMRGEDGE-----IGPRGL-----------PG 646
Query: 348 ELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKP 407
E R L GP G A P P DG PG G GE G GQ G P
Sbjct: 647 EAGPRGL--LGPRGTPGA--PGQPGMAGVDGP-----PGPKGNMGPQ-GEPGPPGQQGNP 696
Query: 408 PGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELG 462
L GP + PG G +G D P + G + E+ LG
Sbjct: 697 GPQGLPGPQGPIG-PPGEKGPQGKPGLAGLPGADGPP--GHPGKEGQSGEKGALG 748
>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
Length = 540
Score = 50.8 bits (120), Expect = 4e-06
Identities = 75/284 (26%), Positives = 103/284 (36%), Gaps = 46/284 (16%)
Query: 229 GDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQ----EEGD---------- 274
GD GQ G RG P + G GA P GP+ ++G+
Sbjct: 175 GDQGQDGAAGPPGPPGPPGARGPPGDTGKDGPRGAQGPAGPKGEPGQDGEMGPKGPPGPK 234
Query: 275 GVPCTPASAPTSGPAPGLGPASWCLEPGSV-------AQGSPDPQQTPSRMGREG-EGTH 326
G P P G GP EPGS+ G+P P+ P G +G G
Sbjct: 235 GEPGVPGKKGDDGTPSQPGPPGPKGEPGSMGPRGENGVDGAPGPKGEPGHRGTDGAAGPR 294
Query: 327 SSLGC-SSLGMVVIADLSTDPTELEERALE-VAGPDGQASAISPASPRRKAADGGHRRAL 384
+ G G V+ D + R L+ + GP G P P A G L
Sbjct: 295 GAPGLKGEQGDTVVID-------YDGRILDALKGPPGPQG--PPGPPGIPGAKG--ELGL 343
Query: 385 PGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLALA--PGS----GESMMGAGDSGHA 438
PG + GE G G+ G G+P L G + L+ PG+ GE A DS
Sbjct: 344 PGAPGIDGE-KGPKGQKGDPGEPGPAGLKGEAGEMGLSGLPGADGLKGEKGESASDSLQE 402
Query: 439 SPDTGPCVNQKQEPGPAQEEAELGGQNLE--RDLEGFRVSPQAS 480
S + + PGP +G Q ++ + L+G + AS
Sbjct: 403 S--LAQLIVEPGPPGPPGPPGPMGLQGIQGPKGLDGAKGEKGAS 444
Score = 38.9 bits (89), Expect = 0.015
Identities = 90/363 (24%), Positives = 118/363 (32%), Gaps = 57/363 (15%)
Query: 165 TQADSARPEQSSQSPVQAVPGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPET 224
T D R Q P G+ P PP + + + DD P
Sbjct: 201 TGKDGPRGAQGPAGPKGEPGQDGEMGPKGPPGP---------KGEPGVPGKKGDDGTPSQ 251
Query: 225 DRVPGDGGQKEHLPSIDSEGEKPDRGAP---QEGGAQRTAGA----GLPGGPQEEGDGV- 276
PG G K S+ GE GAP E G + T GA G PG E+GD V
Sbjct: 252 ---PGPPGPKGEPGSMGPRGENGVDGAPGPKGEPGHRGTDGAAGPRGAPGLKGEQGDTVV 308
Query: 277 -------------PCTPASAPTSGPAPGL-GPASWCLEPGSVAQGSPDPQQ-TPSRMGRE 321
P P P PG G PG + P Q+ P G
Sbjct: 309 IDYDGRILDALKGPPGPQGPPGPPGIPGAKGELGLPGAPGIDGEKGPKGQKGDPGEPGPA 368
Query: 322 G-EGTHSSLGCSSL----GMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAA 376
G +G +G S L G+ S + L+E ++ G P P
Sbjct: 369 GLKGEAGEMGLSGLPGADGLKGEKGESASDS-LQESLAQLIVEPGPPGPPGPPGPMGLQG 427
Query: 377 DGGHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSG 436
G + G GE G SGE G G P VGP + L GE G G
Sbjct: 428 IQGPK----GLDGAKGE-KGASGERGPSGLPGP---VGPPGLIGLPGTKGEK----GRPG 475
Query: 437 HASPDTGPCVNQKQEPGPAQEEAELGGQNL--ERDLEGFRVSPQASVVLEHREIADDPLQ 494
D P + E G E E G + + + ++G + P + + + D L
Sbjct: 476 EPGLDGFP--GPRGEKGDRSERGEKGERGVPGRKGVKGQKGEPGPPGLDQPCPVGPDGLP 533
Query: 495 EPG 497
PG
Sbjct: 534 VPG 536
>gi|50511941 EMI domain containing 1 [Homo sapiens]
Length = 443
Score = 50.4 bits (119), Expect = 5e-06
Identities = 76/282 (26%), Positives = 102/282 (36%), Gaps = 50/282 (17%)
Query: 244 GEKPDRGAPQEGGAQRTAGA-GLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWCLEPG 302
G P +G+P +GG Q GA GLPG +GD A + GP GP PG
Sbjct: 181 GPPPAQGSPGDGGLQDQVGAWGLPGPTGPKGD--------AGSRGPMGMRGPPGPQGPPG 232
Query: 303 SV----AQGSPDPQQTPSRMGREG-EGTHSSLGCSSLGMVVIAD--LSTDPTELEERALE 355
S A G+P + P G G G + +G + D LS TE +
Sbjct: 233 SPGRAGAVGTPGERGPPGPPGPPGPPGPPAPVGPPHARISQHGDPLLSNTFTETNNHWPQ 292
Query: 356 -VAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVG 414
GP G + P P PG TG G G G P G
Sbjct: 293 GPTGPPGPPGPMGPPGP-------------PG-------PTGVPGSPGHIGPP------G 326
Query: 415 PTASLALAPGSGESMMGAGDSG-HASPDTGPCVNQKQEPGPAQEEAELG--GQNLERDLE 471
PT ++ GE G+ G P Q+ EPGP + E G+ L + E
Sbjct: 327 PTGPKGISGHPGEK----GERGLRGEPGPQGSAGQRGEPGPKGDPGEKSHWGEGLHQLRE 382
Query: 472 GFRVSPQASVVLEHREIADDPLQEPGAQQGIPDTTSELAGQR 513
++ + ++LE +P GA T S L G+R
Sbjct: 383 ALKILAERVLILETMIGLYEPELGSGAGPAGTGTPSLLRGKR 424
Score = 37.4 bits (85), Expect = 0.043
Identities = 53/214 (24%), Positives = 66/214 (30%), Gaps = 14/214 (6%)
Query: 177 QSPVQAVPGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDRVPGDGGQKEH 236
+ PV P + P+DP A L +Q P GD G +
Sbjct: 163 EQPVPPTPAT----PEDPAPLWGPPPAQGSPGDGGLQDQVGAWGLPGPTGPKGDAGSRGP 218
Query: 237 LPSIDSEGEKPDRGAPQEGGAQRTAG----AGLPGGPQEEGDGVPCTPASAPTSGPAPGL 292
+ G + G+P GA T G G PG P G P P A S L
Sbjct: 219 MGMRGPPGPQGPPGSPGRAGAVGTPGERGPPGPPGPPGPPGPPAPVGPPHARISQHGDPL 278
Query: 293 GPASWCLEPGSVAQGSPDPQQTPSRMGREG----EGTHSSLG-CSSLGMVVIADLSTDPT 347
++ QG P P MG G G S G G +S P
Sbjct: 279 LSNTFTETNNHWPQGPTGPPGPPGPMGPPGPPGPTGVPGSPGHIGPPGPTGPKGISGHPG 338
Query: 348 ELEERALE-VAGPDGQASAISPASPRRKAADGGH 380
E ER L GP G A P+ + H
Sbjct: 339 EKGERGLRGEPGPQGSAGQRGEPGPKGDPGEKSH 372
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 50.1 bits (118), Expect = 6e-06
Identities = 97/365 (26%), Positives = 127/365 (34%), Gaps = 73/365 (20%)
Query: 227 VPGDGGQK-----EHLPSI-DSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTP 280
+PG G+K LP + +GEK D G GG GLPG P +G+
Sbjct: 348 IPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGE------ 401
Query: 281 ASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIA 340
+G +GP +PG + +Q P +G S G G +V
Sbjct: 402 -----AGVDGQVGPPG---QPGDKGERGAAGEQGP-------DGPKGSKGEPGKGEMVDY 446
Query: 341 DLSTDPTELEERALEVAGPDGQASAI----SPASPRRKAADGGHRRALPGCTSLTGETTG 396
+ + + E R L + GP G I +P P +K G LPG G
Sbjct: 447 NGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIG-----LPG-------PPG 494
Query: 397 ESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQ 456
GE G GK PGD +GP PG G++GH PG
Sbjct: 495 HDGEKGPRGK-PGD--MGPPGPQG-PPGKDGPPGVKGENGHPG-----------SPGEKG 539
Query: 457 EEAELG--GQNLERDLEGFRVSPQASVVLEHREIADDPLQEPGAQQGIPDTTSELAGQRD 514
E+ E G G E+ G + +P A V + P PG QG+P E AG
Sbjct: 540 EKGETGQAGSPGEKGEAGEKGNPGAEV--PGLPGPEGPPGPPGL-QGVPGPKGE-AGLDG 595
Query: 515 HLPHSADQGTWADSLAVELDFLLDSQIQDALDASDFEAPPEQLFPSGNKPGPCWPGPSSH 574
QG D + L A PP P G PGP P
Sbjct: 596 AKGEKGFQGEKGDRGPLGL--------PGASGLDGRPGPPGTPGPIG-VPGPAGPKGERG 646
Query: 575 ANGDP 579
+ GDP
Sbjct: 647 SKGDP 651
Score = 42.0 bits (97), Expect = 0.002
Identities = 58/194 (29%), Positives = 69/194 (35%), Gaps = 44/194 (22%)
Query: 222 PETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPA 281
P D PG G+ H S +GEK + G Q G AG G P E G+P
Sbjct: 517 PGKDGPPGVKGENGHPGSPGEKGEKGETG--QAGSPGEKGEAGEKGNPGAEVPGLP---- 570
Query: 282 SAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGE-GTHSSLG-CSSLGMVVI 339
P P P PG QG P P+ G +GE G G LG+
Sbjct: 571 -GPEGPPGP----------PG--LQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGA 617
Query: 340 ADLSTDPTELEERALEVAGPDGQASAI---SPASPRRKAADGGHRRALPGCTSLTGETTG 396
+ L P GP G I PA P+ + G PG T TG
Sbjct: 618 SGLDGRP-----------GPPGTPGPIGVPGPAGPKGERGSKGD----PGMTG----PTG 658
Query: 397 ESGEAGQDGKPPGD 410
+G G G PPGD
Sbjct: 659 AAGLPGLHG-PPGD 671
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 50.1 bits (118), Expect = 6e-06
Identities = 97/365 (26%), Positives = 127/365 (34%), Gaps = 73/365 (20%)
Query: 227 VPGDGGQK-----EHLPSI-DSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTP 280
+PG G+K LP + +GEK D G GG GLPG P +G+
Sbjct: 286 IPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGE------ 339
Query: 281 ASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIA 340
+G +GP +PG + +Q P +G S G G +V
Sbjct: 340 -----AGVDGQVGPPG---QPGDKGERGAAGEQGP-------DGPKGSKGEPGKGEMVDY 384
Query: 341 DLSTDPTELEERALEVAGPDGQASAI----SPASPRRKAADGGHRRALPGCTSLTGETTG 396
+ + + E R L + GP G I +P P +K G LPG G
Sbjct: 385 NGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIG-----LPG-------PPG 432
Query: 397 ESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQ 456
GE G GK PGD +GP PG G++GH PG
Sbjct: 433 HDGEKGPRGK-PGD--MGPPGPQG-PPGKDGPPGVKGENGHPG-----------SPGEKG 477
Query: 457 EEAELG--GQNLERDLEGFRVSPQASVVLEHREIADDPLQEPGAQQGIPDTTSELAGQRD 514
E+ E G G E+ G + +P A V + P PG QG+P E AG
Sbjct: 478 EKGETGQAGSPGEKGEAGEKGNPGAEV--PGLPGPEGPPGPPGL-QGVPGPKGE-AGLDG 533
Query: 515 HLPHSADQGTWADSLAVELDFLLDSQIQDALDASDFEAPPEQLFPSGNKPGPCWPGPSSH 574
QG D + L A PP P G PGP P
Sbjct: 534 AKGEKGFQGEKGDRGPLGL--------PGASGLDGRPGPPGTPGPIG-VPGPAGPKGERG 584
Query: 575 ANGDP 579
+ GDP
Sbjct: 585 SKGDP 589
Score = 46.2 bits (108), Expect = 9e-05
Identities = 68/235 (28%), Positives = 81/235 (34%), Gaps = 40/235 (17%)
Query: 228 PGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSG 287
PG GQK GE P RG + Q G PG P G P P
Sbjct: 180 PGPQGQKGEKGQC---GEYPHRGEQSQASIQ-----GPPGPPGPPGPSGPLGHPGLPGPM 231
Query: 288 PAPGL-GPASWCLEPGSVAQGSPDPQQTPSRMGREG----EGTHSSLGCSSLGMVVIADL 342
PGL GP PG +G P Q R G G G H + G + + +
Sbjct: 232 GPPGLPGP------PG--PKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGE 283
Query: 343 STDPTELEERALEVAGPDGQASAISPASPRRKAADG-GHRRALPGCTSLTGETTGESGEA 401
P E+ E G G + + A + G R PG L G G GEA
Sbjct: 284 PGIPGTKGEKGAE--GSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPG-PPGPKGEA 340
Query: 402 GQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQ 456
G DG+ VGP PG G +G PD GP K EPG +
Sbjct: 341 GVDGQ------VGP-------PGQPGDKGERGAAGEQGPD-GP-KGSKGEPGKGE 380
Score = 42.0 bits (97), Expect = 0.002
Identities = 58/194 (29%), Positives = 69/194 (35%), Gaps = 44/194 (22%)
Query: 222 PETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPA 281
P D PG G+ H S +GEK + G Q G AG G P E G+P
Sbjct: 455 PGKDGPPGVKGENGHPGSPGEKGEKGETG--QAGSPGEKGEAGEKGNPGAEVPGLP---- 508
Query: 282 SAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGE-GTHSSLG-CSSLGMVVI 339
P P P PG QG P P+ G +GE G G LG+
Sbjct: 509 -GPEGPPGP----------PG--LQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGA 555
Query: 340 ADLSTDPTELEERALEVAGPDGQASAI---SPASPRRKAADGGHRRALPGCTSLTGETTG 396
+ L P GP G I PA P+ + G PG T TG
Sbjct: 556 SGLDGRP-----------GPPGTPGPIGVPGPAGPKGERGSKGD----PGMTG----PTG 596
Query: 397 ESGEAGQDGKPPGD 410
+G G G PPGD
Sbjct: 597 AAGLPGLHG-PPGD 609
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 50.1 bits (118), Expect = 6e-06
Identities = 97/365 (26%), Positives = 127/365 (34%), Gaps = 73/365 (20%)
Query: 227 VPGDGGQK-----EHLPSI-DSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTP 280
+PG G+K LP + +GEK D G GG GLPG P +G+
Sbjct: 288 IPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGE------ 341
Query: 281 ASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIA 340
+G +GP +PG + +Q P +G S G G +V
Sbjct: 342 -----AGVDGQVGPPG---QPGDKGERGAAGEQGP-------DGPKGSKGEPGKGEMVDY 386
Query: 341 DLSTDPTELEERALEVAGPDGQASAI----SPASPRRKAADGGHRRALPGCTSLTGETTG 396
+ + + E R L + GP G I +P P +K G LPG G
Sbjct: 387 NGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIG-----LPG-------PPG 434
Query: 397 ESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQ 456
GE G GK PGD +GP PG G++GH PG
Sbjct: 435 HDGEKGPRGK-PGD--MGPPGPQG-PPGKDGPPGVKGENGHPG-----------SPGEKG 479
Query: 457 EEAELG--GQNLERDLEGFRVSPQASVVLEHREIADDPLQEPGAQQGIPDTTSELAGQRD 514
E+ E G G E+ G + +P A V + P PG QG+P E AG
Sbjct: 480 EKGETGQAGSPGEKGEAGEKGNPGAEV--PGLPGPEGPPGPPGL-QGVPGPKGE-AGLDG 535
Query: 515 HLPHSADQGTWADSLAVELDFLLDSQIQDALDASDFEAPPEQLFPSGNKPGPCWPGPSSH 574
QG D + L A PP P G PGP P
Sbjct: 536 AKGEKGFQGEKGDRGPLGL--------PGASGLDGRPGPPGTPGPIG-VPGPAGPKGERG 586
Query: 575 ANGDP 579
+ GDP
Sbjct: 587 SKGDP 591
Score = 42.0 bits (97), Expect = 0.002
Identities = 58/194 (29%), Positives = 69/194 (35%), Gaps = 44/194 (22%)
Query: 222 PETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPA 281
P D PG G+ H S +GEK + G Q G AG G P E G+P
Sbjct: 457 PGKDGPPGVKGENGHPGSPGEKGEKGETG--QAGSPGEKGEAGEKGNPGAEVPGLP---- 510
Query: 282 SAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGE-GTHSSLG-CSSLGMVVI 339
P P P PG QG P P+ G +GE G G LG+
Sbjct: 511 -GPEGPPGP----------PG--LQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGA 557
Query: 340 ADLSTDPTELEERALEVAGPDGQASAI---SPASPRRKAADGGHRRALPGCTSLTGETTG 396
+ L P GP G I PA P+ + G PG T TG
Sbjct: 558 SGLDGRP-----------GPPGTPGPIGVPGPAGPKGERGSKGD----PGMTG----PTG 598
Query: 397 ESGEAGQDGKPPGD 410
+G G G PPGD
Sbjct: 599 AAGLPGLHG-PPGD 611
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 50.1 bits (118), Expect = 6e-06
Identities = 97/365 (26%), Positives = 127/365 (34%), Gaps = 73/365 (20%)
Query: 227 VPGDGGQK-----EHLPSI-DSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTP 280
+PG G+K LP + +GEK D G GG GLPG P +G+
Sbjct: 291 IPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGE------ 344
Query: 281 ASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIA 340
+G +GP +PG + +Q P +G S G G +V
Sbjct: 345 -----AGVDGQVGPPG---QPGDKGERGAAGEQGP-------DGPKGSKGEPGKGEMVDY 389
Query: 341 DLSTDPTELEERALEVAGPDGQASAI----SPASPRRKAADGGHRRALPGCTSLTGETTG 396
+ + + E R L + GP G I +P P +K G LPG G
Sbjct: 390 NGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIG-----LPG-------PPG 437
Query: 397 ESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQ 456
GE G GK PGD +GP PG G++GH PG
Sbjct: 438 HDGEKGPRGK-PGD--MGPPGPQG-PPGKDGPPGVKGENGHPG-----------SPGEKG 482
Query: 457 EEAELG--GQNLERDLEGFRVSPQASVVLEHREIADDPLQEPGAQQGIPDTTSELAGQRD 514
E+ E G G E+ G + +P A V + P PG QG+P E AG
Sbjct: 483 EKGETGQAGSPGEKGEAGEKGNPGAEV--PGLPGPEGPPGPPGL-QGVPGPKGE-AGLDG 538
Query: 515 HLPHSADQGTWADSLAVELDFLLDSQIQDALDASDFEAPPEQLFPSGNKPGPCWPGPSSH 574
QG D + L A PP P G PGP P
Sbjct: 539 AKGEKGFQGEKGDRGPLGL--------PGASGLDGRPGPPGTPGPIG-VPGPAGPKGERG 589
Query: 575 ANGDP 579
+ GDP
Sbjct: 590 SKGDP 594
Score = 42.0 bits (97), Expect = 0.002
Identities = 58/194 (29%), Positives = 69/194 (35%), Gaps = 44/194 (22%)
Query: 222 PETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPA 281
P D PG G+ H S +GEK + G Q G AG G P E G+P
Sbjct: 460 PGKDGPPGVKGENGHPGSPGEKGEKGETG--QAGSPGEKGEAGEKGNPGAEVPGLP---- 513
Query: 282 SAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGE-GTHSSLG-CSSLGMVVI 339
P P P PG QG P P+ G +GE G G LG+
Sbjct: 514 -GPEGPPGP----------PG--LQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGA 560
Query: 340 ADLSTDPTELEERALEVAGPDGQASAI---SPASPRRKAADGGHRRALPGCTSLTGETTG 396
+ L P GP G I PA P+ + G PG T TG
Sbjct: 561 SGLDGRP-----------GPPGTPGPIGVPGPAGPKGERGSKGD----PGMTG----PTG 601
Query: 397 ESGEAGQDGKPPGD 410
+G G G PPGD
Sbjct: 602 AAGLPGLHG-PPGD 614
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.130 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,005,955
Number of Sequences: 37866
Number of extensions: 2301335
Number of successful extensions: 10305
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 901
Number of HSP's that attempted gapping in prelim test: 7445
Number of HSP's gapped (non-prelim): 2721
length of query: 637
length of database: 18,247,518
effective HSP length: 109
effective length of query: 528
effective length of database: 14,120,124
effective search space: 7455425472
effective search space used: 7455425472
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.