RP1L1 1987

Name: RP1L1	Sequence: fasta or formatted (2400aa)		NCBI GI: 117414137
Description: retinitis pigmentosa 1-like 1		Referenced in: Crystallins and Other Eye Proteins Neurons
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.0 239 3 C cysteine 1.7 41 2 D aspartate 4.3 104 2 E glutamate 14.7 352 3 F phenylalanine 1.0 25 1 G glycine 11.3 271 3 H histidine 1.6 39 1 I isoleucine 1.0 25 1 K lysine 2.8 66 3 L leucine 6.7 161 3 M methionine 1.0 24 2 N asparagine 1.2 30 1 P proline 8.9 213 3 Q glutamine 6.6 158 3 R arginine 5.7 136 3 S serine 10.7 257 4 T threonine 5.2 124 2 V valine 4.2 102 2 W tryptophan 0.9 21 1 Y tyrosine 0.5 12 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 retinitis pigmentosa 1-like 1 RPGR 0.040 retinitis pigmentosa GTPase regulator isoform C [Hom... RP1 0.031 retinitis pigmentosa RP1 protein NEFH 0.022 neurofilament, heavy polypeptide 200kDa FSCB 0.021 fibrous sheath CABYR binding protein CLIC6 0.021 chloride intracellular channel 6 AKAP12 0.020 A kinase (PRKA) anchor protein 12 isoform 1 AKAP12 0.020 A kinase (PRKA) anchor protein 12 isoform 2 PALM3 0.020 hypothetical protein LOC342979 C1orf173 0.019 hypothetical protein LOC127254 LOC100133758 0.018 PREDICTED: hypothetical protein, partial NEFM 0.018 neurofilament, medium polypeptide 150kDa isoform 1 ... NEFM 0.018 neurofilament, medium polypeptide 150kDa isoform 2 ... MDN1 0.017 MDN1, midasin homolog APOB48R 0.017 apolipoprotein B48 receptor PLEC1 0.016 plectin 1 isoform 11 PLEC1 0.016 plectin 1 isoform 10 PLEC1 0.016 plectin 1 isoform 8 PLEC1 0.016 plectin 1 isoform 7 PLEC1 0.016 plectin 1 isoform 6 PLEC1 0.016 plectin 1 isoform 3 PLEC1 0.016 plectin 1 isoform 2 PLEC1 0.016 plectin 1 isoform 1 MAP1B 0.016 microtubule-associated protein 1B SPEN 0.016 spen homolog, transcriptional regulator TCOF1 0.015 Treacher Collins-Franceschetti syndrome 1 isoform e... TCOF1 0.015 Treacher Collins-Franceschetti syndrome 1 isoform a ... TCOF1 0.015 Treacher Collins-Franceschetti syndrome 1 isoform c ... NES 0.015 nestin IWS1 0.014 IWS1 homolog Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.