Guide to the Human Genome
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Name: EMID1 Sequence: fasta or formatted (443aa) NCBI GI: 50511941
Description:

EMI domain containing 1

Referenced in:

Collagen
Complement

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         29           2
 C cysteine            2.3         10           2
 D aspartate           1.6          7           1
 E glutamate           5.2         23           2
 F phenylalanine       0.7          3           1
 G glycine            18.1         80           3
 H histidine           2.3         10           1
 I isoleucine          2.5         11           1
 K lysine              2.7         12           1
 L leucine             7.0         31           3
 M methionine          2.7         12           1
 N asparagine          1.8          8           2
 P proline            16.7         74           3
 Q glutamine           2.9         13           1
 R arginine            6.5         29           2
 S serine              6.5         29           2
 T threonine           5.6         25           1
 V valine              4.5         20           2
 W tryptophan          2.3         10           1
 Y tyrosine            1.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   EMI domain containing 1 
EMID2                 0.291   EMI domain containing 2 
COL2A1                0.170   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.170   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL1A1                0.166   alpha 1 type I collagen preproprotein 
COL5A1                0.166   alpha 1 type V collagen preproprotein 
COL27A1               0.163   collagen, type XXVII, alpha 1 
COL9A3                0.161   alpha 3 type IX collagen 
COL3A1                0.160   collagen type III alpha 1 preproprotein 
COL11A2               0.160   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.160   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.160   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL16A1               0.160   alpha 1 type XVI collagen precursor 
COL11A1               0.158   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.158   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.158   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL5A2                0.158   alpha 2 type V collagen preproprotein 
COL22A1               0.158   collagen, type XXII, alpha 1 
COL5A3                0.157   collagen, type V, alpha 3 preproprotein 
LOC100293055          0.153   PREDICTED: similar to COL22A1 protein 
COL15A1               0.152   alpha 1 type XV collagen precursor 
COL9A2                0.152   alpha 2 type IX collagen 
COL23A1               0.152   collagen, type XXIII, alpha 1 
COL4A5                0.151   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.151   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.151   type IV collagen alpha 5 isoform 3 precursor 
COL13A1               0.150   alpha 1 type XIII collagen isoform 10 
COL17A1               0.149   alpha 1 type XVII collagen 
COL7A1                0.147   alpha 1 type VII collagen precursor 
COL4A3                0.147   alpha 3 type IV collagen isoform 4 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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