| Name: COL13A1 | Sequence: fasta or formatted (657aa) | NCBI GI: 22027605 | |
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Description: alpha 1 type XIII collagen isoform 17
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Referenced in:
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Other entries for this name:
alt prot [717aa] alpha 1 type XIII collagen isoform 20 alt prot [717aa] alpha 1 type XIII collagen isoform 1 alt prot [705aa] alpha 1 type XIII collagen isoform 2 alt prot [700aa] alpha 1 type XIII collagen isoform 3 alt prot [698aa] alpha 1 type XIII collagen isoform 4 alt prot [695aa] alpha 1 type XIII collagen isoform 5 alt prot [702aa] alpha 1 type XIII collagen isoform 6 alt prot [703aa] alpha 1 type XIII collagen isoform 7 alt prot [705aa] alpha 1 type XIII collagen isoform 8 alt prot [688aa] alpha 1 type XIII collagen isoform 9 alt prot [676aa] alpha 1 type XIII collagen isoform 10 alt prot [686aa] alpha 1 type XIII collagen isoform 11 alt prot [691aa] alpha 1 type XIII collagen isoform 12 alt prot [690aa] alpha 1 type XIII collagen isoform 13 alt prot [664aa] alpha 1 type XIII collagen isoform 14 alt prot [668aa] alpha 1 type XIII collagen isoform 15 alt prot [660aa] alpha 1 type XIII collagen isoform 16 alt prot [655aa] alpha 1 type XIII collagen isoform 18 alt prot [610aa] alpha 1 type XIII collagen isoform 19 | |||
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 7.0 46 3 C cysteine 1.2 8 1 D aspartate 3.2 21 1 E glutamate 6.7 44 1 F phenylalanine 0.8 5 1 G glycine 26.0 171 3 H histidine 1.7 11 1 I isoleucine 2.3 15 2 K lysine 6.7 44 2 L leucine 7.0 46 2 M methionine 1.8 12 1 N asparagine 1.5 10 1 P proline 16.9 111 2 Q glutamine 4.3 28 2 R arginine 4.4 29 4 S serine 3.2 21 2 T threonine 2.3 15 1 V valine 2.3 15 1 W tryptophan 0.3 2 1 Y tyrosine 0.5 3 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 alpha 1 type XIII collagen isoform 17 COL13A1 0.985 alpha 1 type XIII collagen isoform 5 COL13A1 0.984 alpha 1 type XIII collagen isoform 9 COL13A1 0.981 alpha 1 type XIII collagen isoform 3 COL13A1 0.979 alpha 1 type XIII collagen isoform 2 COL13A1 0.976 alpha 1 type XIII collagen isoform 1 COL13A1 0.970 alpha 1 type XIII collagen isoform 20 COL13A1 0.969 alpha 1 type XIII collagen isoform 16 COL13A1 0.955 alpha 1 type XIII collagen isoform 14 COL13A1 0.955 alpha 1 type XIII collagen isoform 18 COL13A1 0.955 alpha 1 type XIII collagen isoform 4 COL13A1 0.952 alpha 1 type XIII collagen isoform 10 COL13A1 0.950 alpha 1 type XIII collagen isoform 8 COL13A1 0.946 alpha 1 type XIII collagen isoform 6 COL13A1 0.945 alpha 1 type XIII collagen isoform 7 COL13A1 0.930 alpha 1 type XIII collagen isoform 15 COL13A1 0.929 alpha 1 type XIII collagen isoform 11 COL13A1 0.921 alpha 1 type XIII collagen isoform 13 COL13A1 0.920 alpha 1 type XIII collagen isoform 12 COL13A1 0.882 alpha 1 type XIII collagen isoform 19 COL4A5 0.306 type IV collagen alpha 5 isoform 3 precursor COL4A5 0.306 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.304 type IV collagen alpha 5 isoform 2 precursor COL5A1 0.303 alpha 1 type V collagen preproprotein COL25A1 0.302 collagen, type XXV, alpha 1 isoform 1 COL5A2 0.295 alpha 2 type V collagen preproprotein COL3A1 0.294 collagen type III alpha 1 preproprotein COL11A1 0.293 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.293 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.293 alpha 1 type XI collagen isoform A preproprotein [Ho...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
