OTOL1 2561

Name: OTOL1	Sequence: fasta or formatted (477aa)		NCBI GI: 122937273
Description: hypothetical protein LOC131149		Referenced in: Collagen Complement Auditory and Vestibular Functions
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.6 22 1 C cysteine 2.1 10 2 D aspartate 4.0 19 2 E glutamate 7.5 36 4 F phenylalanine 3.6 17 2 G glycine 19.5 93 2 H histidine 0.6 3 1 I isoleucine 4.2 20 2 K lysine 10.1 48 2 L leucine 6.1 29 2 M methionine 2.3 11 1 N asparagine 2.9 14 1 P proline 9.4 45 3 Q glutamine 2.9 14 1 R arginine 2.7 13 1 S serine 6.5 31 2 T threonine 4.6 22 2 V valine 3.6 17 2 W tryptophan 0.8 4 1 Y tyrosine 1.9 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 hypothetical protein LOC131149 COL8A2 0.242 collagen, type VIII, alpha 2 COL10A1 0.236 type X collagen alpha 1 precursor COL8A1 0.231 alpha 1 type VIII collagen precursor COL8A1 0.231 alpha 1 type VIII collagen precursor C1QTNF9B 0.230 C1q and tumor necrosis factor related protein 9B [Ho... C1QTNF9 0.227 C1q and tumor necrosis factor related protein 9 [Hom... COL21A1 0.190 collagen, type XXI, alpha 1 precursor COL1A1 0.184 alpha 1 type I collagen preproprotein COL11A1 0.178 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.178 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.178 alpha 1 type XI collagen isoform A preproprotein [Ho... MARCO 0.178 macrophage receptor with collagenous structure COL24A1 0.177 collagen, type XXIV, alpha 1 COL27A1 0.176 collagen, type XXVII, alpha 1 COL6A2 0.176 alpha 2 type VI collagen isoform 2C2a' precursor [H... COL6A2 0.176 alpha 2 type VI collagen isoform 2C2a precursor [Ho... COL6A2 0.176 alpha 2 type VI collagen isoform 2C2 precursor [Hom... COL7A1 0.175 alpha 1 type VII collagen precursor COL4A1 0.175 alpha 1 type IV collagen preproprotein COL5A1 0.175 alpha 1 type V collagen preproprotein COL11A2 0.174 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.174 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.174 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL5A3 0.174 collagen, type V, alpha 3 preproprotein COL25A1 0.173 collagen, type XXV, alpha 1 isoform 1 COL9A2 0.173 alpha 2 type IX collagen LOC100293055 0.173 PREDICTED: similar to COL22A1 protein COL6A1 0.173 collagen, type VI, alpha 1 precursor COL13A1 0.173 alpha 1 type XIII collagen isoform 7 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.