Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C1QTNF9B Sequence: fasta or formatted (333aa) NCBI GI: 56847616
Description:

C1q and tumor necrosis factor related protein 9B

Referenced in:

Complement

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9         13           1
 C cysteine            1.2          4           1
 D aspartate           6.0         20           3
 E glutamate           5.1         17           1
 F phenylalanine       3.6         12           1
 G glycine            20.1         67           2
 H histidine           2.1          7           1
 I isoleucine          4.8         16           1
 K lysine              7.5         25           1
 L leucine             6.6         22           3
 M methionine          1.2          4           1
 N asparagine          3.3         11           1
 P proline             8.1         27           1
 Q glutamine           3.3         11           1
 R arginine            4.2         14           1
 S serine              5.1         17           2
 T threonine           5.7         19           2
 V valine              5.1         17           1
 W tryptophan          1.2          4           2
 Y tyrosine            1.8          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   C1q and tumor necrosis factor related protein 9B [Ho... 
C1QTNF9               0.978   C1q and tumor necrosis factor related protein 9 [Hom...
OTOL1                 0.336   hypothetical protein LOC131149 
COL8A2                0.312   collagen, type VIII, alpha 2 
COL10A1               0.305   type X collagen alpha 1 precursor 
COL8A1                0.280   alpha 1 type VIII collagen precursor 
COL8A1                0.280   alpha 1 type VIII collagen precursor 
C1QTNF2               0.259   C1q and tumor necrosis factor related protein 2 [Hom...
C1QTNF7               0.244   C1q and tumor necrosis factor related protein 7 isof...
C1QTNF7               0.244   C1q and tumor necrosis factor related protein 7 iso...
C1QTNF7               0.244   C1q and tumor necrosis factor related protein 7 iso...
ADIPOQ                0.236   adiponectin precursor 
COL3A1                0.214   collagen type III alpha 1 preproprotein 
COL5A1                0.209   alpha 1 type V collagen preproprotein 
LOC100293055          0.209   PREDICTED: similar to COL22A1 protein 
COL22A1               0.209   collagen, type XXII, alpha 1 
COL13A1               0.208   alpha 1 type XIII collagen isoform 7 
COL13A1               0.206   alpha 1 type XIII collagen isoform 12 
COL11A1               0.205   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.205   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.205   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL11A2               0.202   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.202   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.202   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL13A1               0.202   alpha 1 type XIII collagen isoform 15 
COL13A1               0.202   alpha 1 type XIII collagen isoform 13 
COL9A2                0.202   alpha 2 type IX collagen 
COL13A1               0.202   alpha 1 type XIII collagen isoform 19 
COL9A1                0.199   alpha 1 type IX collagen isoform 1 precursor 
COL9A1                0.199   alpha 1 type IX collagen isoform 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press